data_6GJZ # _model_server_result.job_id UkoVUEiaAa9HnZkMbQE4Ag _model_server_result.datetime_utc '2025-03-06 07:02:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gjz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1102}' # _entry.id 6GJZ # _exptl.entry_id 6GJZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GJZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GJZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 889 A CYS 907 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc2 A SG CYS 892 A CYS 910 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc3 A SG CYS 944 A CYS 962 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 A SG CYS 946 A CYS 964 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? hydrog WATSON-CRICK hydrog1 B N3 C 1 X C 1 1_555 C N1 G 14 Y G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 C 1 X C 1 1_555 C O6 G 14 Y G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 C 1 X C 1 1_555 C N2 G 14 Y G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 A 2 X A 2 1_555 C N3 U 13 Y U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N6 A 2 X A 2 1_555 C O4 U 13 Y U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 A 3 X A 3 1_555 C N3 U 12 Y U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 A 3 X A 3 1_555 C O4 U 12 Y U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 G 4 X G 4 1_555 C N3 C 11 Y C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N2 G 4 X G 4 1_555 C O2 C 11 Y C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O6 G 4 X G 4 1_555 C N4 C 11 Y C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 C 5 X C 5 1_555 C N1 G 10 Y G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 C 5 X C 5 1_555 C O6 G 10 Y G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 C 5 X C 5 1_555 C N2 G 10 Y G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 C 6 X C 6 1_555 C N1 G 9 Y G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 C 6 X C 6 1_555 C O6 G 9 Y G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 C 6 X C 6 1_555 C N2 G 9 Y G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N1 G 7 X G 7 1_555 C N3 C 8 Y C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N2 G 7 X G 7 1_555 C O2 C 8 Y C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O6 G 7 X G 7 1_555 C N4 C 8 Y C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 A 8 X A 8 1_555 C N3 U 7 Y U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N6 A 8 X A 8 1_555 C O4 U 7 Y U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N1 G 9 X G 9 1_555 C N3 C 6 Y C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N2 G 9 X G 9 1_555 C O2 C 6 Y C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O6 G 9 X G 9 1_555 C N4 C 6 Y C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N1 G 10 X G 10 1_555 C N3 C 5 Y C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N2 G 10 X G 10 1_555 C O2 C 5 Y C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O6 G 10 X G 10 1_555 C N4 C 5 Y C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N1 A 11 X A 11 1_555 C N3 U 4 Y U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N6 A 11 X A 11 1_555 C O4 U 4 Y U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N1 G 12 X G 12 1_555 C N3 C 3 Y C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N2 G 12 X G 12 1_555 C O2 C 3 Y C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B O6 G 12 X G 12 1_555 C N4 C 3 Y C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N1 A 13 X A 13 1_555 C N3 U 2 Y U 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B N6 A 13 X A 13 1_555 C O4 U 2 Y U 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 B N1 G 14 X G 14 1_555 C N3 C 1 Y C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 B N2 G 14 X G 14 1_555 C O2 C 1 Y C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 B O6 G 14 X G 14 1_555 C N4 C 1 Y C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 52 n n PG O2G ANP sing 53 n n PG O3G ANP sing 54 n n PG N3B ANP sing 55 n n O2G HOG2 ANP sing 56 n n O3G HOG3 ANP sing 57 n n PB O1B ANP doub 58 n n PB O2B ANP sing 59 n n PB N3B ANP sing 60 n n PB O3A ANP sing 61 n n O2B HOB2 ANP sing 62 n n N3B HNB1 ANP sing 63 n n PA O1A ANP doub 64 n n PA O2A ANP sing 65 n n PA O3A ANP sing 66 n n PA O5' ANP sing 67 n n O2A HOA2 ANP sing 68 n n O5' C5' ANP sing 69 n n C5' C4' ANP sing 70 n n C5' "H5'1" ANP sing 71 n n C5' "H5'2" ANP sing 72 n n C4' O4' ANP sing 73 n n C4' C3' ANP sing 74 n n C4' H4' ANP sing 75 n n O4' C1' ANP sing 76 n n C3' O3' ANP sing 77 n n C3' C2' ANP sing 78 n n C3' H3' ANP sing 79 n n O3' HO3' ANP sing 80 n n C2' O2' ANP sing 81 n n C2' C1' ANP sing 82 n n C2' H2' ANP sing 83 n n O2' HO2' ANP sing 84 n n C1' N9 ANP sing 85 n n C1' H1' ANP sing 86 n n N9 C8 ANP sing 87 n y N9 C4 ANP sing 88 n y C8 N7 ANP doub 89 n y C8 H8 ANP sing 90 n n N7 C5 ANP sing 91 n y C5 C6 ANP sing 92 n y C5 C4 ANP doub 93 n y C6 N6 ANP sing 94 n n C6 N1 ANP doub 95 n y N6 HN61 ANP sing 96 n n N6 HN62 ANP sing 97 n n N1 C2 ANP sing 98 n y C2 N3 ANP doub 99 n y C2 H2 ANP sing 100 n n N3 C4 ANP sing 101 n y # _atom_sites.entry_id 6GJZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 1101 16 ZN ZN . E 5 ANP A 1 1102 1101 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 5 96.678 137.656 119.814 1 176.08 ? PG ANP 1102 A 1 HETATM 2 O O1G ANP . . . E 5 96.515 137.952 118.275 1 176.08 ? O1G ANP 1102 A 1 HETATM 3 O O2G ANP . . . E 5 97.961 138.254 120.3 1 176.08 ? O2G ANP 1102 A 1 HETATM 4 O O3G ANP . . . E 5 96.647 136.1 120.08 1 176.08 ? O3G ANP 1102 A 1 HETATM 5 P PB ANP . . . E 5 95.299 137.704 122.165 1 176.08 ? PB ANP 1102 A 1 HETATM 6 O O1B ANP . . . E 5 94.072 136.751 122.216 1 176.08 ? O1B ANP 1102 A 1 HETATM 7 O O2B ANP . . . E 5 96.572 136.982 122.464 1 176.08 ? O2B ANP 1102 A 1 HETATM 8 N N3B ANP . . . E 5 95.371 138.342 120.627 1 176.08 ? N3B ANP 1102 A 1 HETATM 9 P PA ANP . . . E 5 94.138 140.022 122.747 1 176.08 ? PA ANP 1102 A 1 HETATM 10 O O1A ANP . . . E 5 93.586 139.577 121.388 1 176.08 ? O1A ANP 1102 A 1 HETATM 11 O O2A ANP . . . E 5 94.824 141.335 122.765 1 176.08 ? O2A ANP 1102 A 1 HETATM 12 O O3A ANP . . . E 5 95.111 138.862 123.181 1 176.08 ? O3A ANP 1102 A 1 HETATM 13 O O5' ANP . . . E 5 93.025 140.041 123.864 1 176.08 ? O5' ANP 1102 A 1 HETATM 14 C C5' ANP . . . E 5 93.373 140.333 125.227 1 176.08 ? C5' ANP 1102 A 1 HETATM 15 C C4' ANP . . . E 5 93.098 141.791 125.488 1 176.08 ? C4' ANP 1102 A 1 HETATM 16 O O4' ANP . . . E 5 92.041 142.239 124.613 1 176.08 ? O4' ANP 1102 A 1 HETATM 17 C C3' ANP . . . E 5 92.61 142.106 126.895 1 176.08 ? C3' ANP 1102 A 1 HETATM 18 O O3' ANP . . . E 5 92.939 143.439 127.263 1 176.08 ? O3' ANP 1102 A 1 HETATM 19 C C2' ANP . . . E 5 91.101 141.905 126.766 1 176.08 ? C2' ANP 1102 A 1 HETATM 20 O O2' ANP . . . E 5 90.385 142.687 127.714 1 176.08 ? O2' ANP 1102 A 1 HETATM 21 C C1' ANP . . . E 5 90.842 142.417 125.345 1 176.08 ? C1' ANP 1102 A 1 HETATM 22 N N9 ANP . . . E 5 89.777 141.703 124.652 1 176.08 ? N9 ANP 1102 A 1 HETATM 23 C C8 ANP . . . E 5 89.918 140.729 123.704 1 176.08 ? C8 ANP 1102 A 1 HETATM 24 N N7 ANP . . . E 5 88.78 140.255 123.251 1 176.08 ? N7 ANP 1102 A 1 HETATM 25 C C5 ANP . . . E 5 87.829 140.966 123.954 1 176.08 ? C5 ANP 1102 A 1 HETATM 26 C C6 ANP . . . E 5 86.419 140.936 123.938 1 176.08 ? C6 ANP 1102 A 1 HETATM 27 N N6 ANP . . . E 5 85.7 140.126 123.156 1 176.08 ? N6 ANP 1102 A 1 HETATM 28 N N1 ANP . . . E 5 85.763 141.778 124.769 1 176.08 ? N1 ANP 1102 A 1 HETATM 29 C C2 ANP . . . E 5 86.473 142.59 125.556 1 176.08 ? C2 ANP 1102 A 1 HETATM 30 N N3 ANP . . . E 5 87.8 142.706 125.656 1 176.08 ? N3 ANP 1102 A 1 HETATM 31 C C4 ANP . . . E 5 88.421 141.862 124.83 1 176.08 ? C4 ANP 1102 A 1 # _model_server_stats.io_time_ms 263 _model_server_stats.parse_time_ms 66 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #