data_6GK4 # _model_server_result.job_id ST9Nc1VL2ay82HQtbiZyKw _model_server_result.datetime_utc '2024-11-13 17:53:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":702}' # _entry.id 6GK4 # _exptl.entry_id 6GK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.96 _cell.angle_gamma 90 _cell.entry_id 6GK4 _cell.length_a 80.94 _cell.length_b 55.19 _cell.length_c 114.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,L,M,N 1 1 D,E,F,J,K,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 C SG CYS 22 C CYS 22 1_555 C SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 E SG CYS 22 E CYS 22 1_555 E SG CYS 95 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 F SG CYS 22 F CYS 22 1_555 F SG CYS 95 F CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc1 A OG1 THR 48 A THR 465 1_555 H MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc2 A OE1 GLN 76 A GLN 493 1_555 H MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc3 H MG MG . A MG 702 1_555 I O1B ATP . A ATP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc4 D OG1 THR 48 D THR 465 1_555 K MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc5 D OD1 ASP 155 D ASP 572 1_555 K MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc6 K MG MG . D MG 702 1_555 O O HOH . D HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6GK4 _atom_sites.fract_transf_matrix[1][1] 0.012355 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003071 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018119 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GOL A 1 701 1 GOL GOL . H 5 MG A 1 702 3 MG MG . I 6 ATP A 1 703 1 ATP ATP . J 6 ATP D 1 701 101 ATP ATP . K 5 MG D 1 702 103 MG MG . L 7 HOH A 1 801 30 HOH HOH . L 7 HOH A 2 802 28 HOH HOH . L 7 HOH A 3 803 172 HOH HOH . L 7 HOH A 4 804 32 HOH HOH . L 7 HOH A 5 805 57 HOH HOH . L 7 HOH A 6 806 67 HOH HOH . L 7 HOH A 7 807 82 HOH HOH . L 7 HOH A 8 808 77 HOH HOH . L 7 HOH A 9 809 174 HOH HOH . L 7 HOH A 10 810 25 HOH HOH . L 7 HOH A 11 811 139 HOH HOH . L 7 HOH A 12 812 159 HOH HOH . L 7 HOH A 13 813 124 HOH HOH . L 7 HOH A 14 814 65 HOH HOH . L 7 HOH A 15 815 33 HOH HOH . L 7 HOH A 16 816 55 HOH HOH . L 7 HOH A 17 817 38 HOH HOH . L 7 HOH A 18 818 27 HOH HOH . L 7 HOH A 19 819 31 HOH HOH . L 7 HOH A 20 820 120 HOH HOH . L 7 HOH A 21 821 173 HOH HOH . L 7 HOH A 22 822 143 HOH HOH . L 7 HOH A 23 823 7 HOH HOH . L 7 HOH A 24 824 64 HOH HOH . L 7 HOH A 25 825 29 HOH HOH . L 7 HOH A 26 826 26 HOH HOH . L 7 HOH A 27 827 21 HOH HOH . L 7 HOH A 28 828 46 HOH HOH . L 7 HOH A 29 829 158 HOH HOH . L 7 HOH A 30 830 175 HOH HOH . L 7 HOH A 31 831 141 HOH HOH . L 7 HOH A 32 832 154 HOH HOH . L 7 HOH A 33 833 93 HOH HOH . L 7 HOH A 34 834 176 HOH HOH . L 7 HOH A 35 835 86 HOH HOH . L 7 HOH A 36 836 171 HOH HOH . L 7 HOH A 37 837 65 HOH HOH . L 7 HOH A 38 838 91 HOH HOH . L 7 HOH A 39 839 33 HOH HOH . L 7 HOH A 40 840 152 HOH HOH . L 7 HOH A 41 841 30 HOH HOH . L 7 HOH A 42 842 149 HOH HOH . L 7 HOH A 43 843 28 HOH HOH . L 7 HOH A 44 844 74 HOH HOH . L 7 HOH A 45 845 147 HOH HOH . L 7 HOH A 46 846 25 HOH HOH . L 7 HOH A 47 847 73 HOH HOH . L 7 HOH A 48 848 18 HOH HOH . L 7 HOH A 49 849 130 HOH HOH . L 7 HOH A 50 850 95 HOH HOH . L 7 HOH A 51 851 12 HOH HOH . M 7 HOH B 1 201 40 HOH HOH . M 7 HOH B 2 202 63 HOH HOH . M 7 HOH B 3 203 133 HOH HOH . M 7 HOH B 4 204 57 HOH HOH . M 7 HOH B 5 205 8 HOH HOH . M 7 HOH B 6 206 61 HOH HOH . M 7 HOH B 7 207 49 HOH HOH . M 7 HOH B 8 208 119 HOH HOH . M 7 HOH B 9 209 3 HOH HOH . M 7 HOH B 10 210 64 HOH HOH . M 7 HOH B 11 211 11 HOH HOH . M 7 HOH B 12 212 32 HOH HOH . M 7 HOH B 13 213 62 HOH HOH . M 7 HOH B 14 214 9 HOH HOH . M 7 HOH B 15 215 48 HOH HOH . M 7 HOH B 16 216 46 HOH HOH . M 7 HOH B 17 217 2 HOH HOH . M 7 HOH B 18 218 66 HOH HOH . M 7 HOH B 19 219 47 HOH HOH . M 7 HOH B 20 220 132 HOH HOH . M 7 HOH B 21 221 123 HOH HOH . M 7 HOH B 22 222 42 HOH HOH . M 7 HOH B 23 223 62 HOH HOH . M 7 HOH B 24 224 19 HOH HOH . M 7 HOH B 25 225 58 HOH HOH . N 7 HOH C 1 201 36 HOH HOH . N 7 HOH C 2 202 61 HOH HOH . N 7 HOH C 3 203 31 HOH HOH . N 7 HOH C 4 204 35 HOH HOH . N 7 HOH C 5 205 8 HOH HOH . N 7 HOH C 6 206 29 HOH HOH . N 7 HOH C 7 207 24 HOH HOH . N 7 HOH C 8 208 94 HOH HOH . N 7 HOH C 9 209 69 HOH HOH . N 7 HOH C 10 210 117 HOH HOH . N 7 HOH C 11 211 59 HOH HOH . N 7 HOH C 12 212 20 HOH HOH . N 7 HOH C 13 213 144 HOH HOH . N 7 HOH C 14 214 56 HOH HOH . N 7 HOH C 15 215 41 HOH HOH . N 7 HOH C 16 216 113 HOH HOH . N 7 HOH C 17 217 4 HOH HOH . N 7 HOH C 18 218 134 HOH HOH . N 7 HOH C 19 219 115 HOH HOH . N 7 HOH C 20 220 155 HOH HOH . N 7 HOH C 21 221 58 HOH HOH . N 7 HOH C 22 222 55 HOH HOH . N 7 HOH C 23 223 79 HOH HOH . N 7 HOH C 24 224 68 HOH HOH . N 7 HOH C 25 225 102 HOH HOH . N 7 HOH C 26 226 87 HOH HOH . N 7 HOH C 27 227 15 HOH HOH . N 7 HOH C 28 228 37 HOH HOH . O 7 HOH D 1 801 23 HOH HOH . O 7 HOH D 2 802 70 HOH HOH . O 7 HOH D 3 803 51 HOH HOH . O 7 HOH D 4 804 42 HOH HOH . O 7 HOH D 5 805 126 HOH HOH . O 7 HOH D 6 806 145 HOH HOH . O 7 HOH D 7 807 50 HOH HOH . O 7 HOH D 8 808 20 HOH HOH . O 7 HOH D 9 809 140 HOH HOH . O 7 HOH D 10 810 157 HOH HOH . O 7 HOH D 11 811 136 HOH HOH . O 7 HOH D 12 812 15 HOH HOH . O 7 HOH D 13 813 148 HOH HOH . O 7 HOH D 14 814 12 HOH HOH . O 7 HOH D 15 815 19 HOH HOH . O 7 HOH D 16 816 53 HOH HOH . O 7 HOH D 17 817 6 HOH HOH . O 7 HOH D 18 818 83 HOH HOH . O 7 HOH D 19 819 41 HOH HOH . O 7 HOH D 20 820 96 HOH HOH . O 7 HOH D 21 821 169 HOH HOH . O 7 HOH D 22 822 104 HOH HOH . O 7 HOH D 23 823 146 HOH HOH . O 7 HOH D 24 824 70 HOH HOH . O 7 HOH D 25 825 3 HOH HOH . O 7 HOH D 26 826 7 HOH HOH . O 7 HOH D 27 827 78 HOH HOH . O 7 HOH D 28 828 13 HOH HOH . O 7 HOH D 29 829 103 HOH HOH . O 7 HOH D 30 830 111 HOH HOH . O 7 HOH D 31 831 1 HOH HOH . O 7 HOH D 32 832 49 HOH HOH . O 7 HOH D 33 833 71 HOH HOH . O 7 HOH D 34 834 52 HOH HOH . O 7 HOH D 35 835 105 HOH HOH . O 7 HOH D 36 836 52 HOH HOH . O 7 HOH D 37 837 84 HOH HOH . O 7 HOH D 38 838 80 HOH HOH . O 7 HOH D 39 839 161 HOH HOH . O 7 HOH D 40 840 39 HOH HOH . O 7 HOH D 41 841 116 HOH HOH . O 7 HOH D 42 842 5 HOH HOH . O 7 HOH D 43 843 66 HOH HOH . O 7 HOH D 44 844 51 HOH HOH . O 7 HOH D 45 845 153 HOH HOH . O 7 HOH D 46 846 75 HOH HOH . P 7 HOH E 1 201 1 HOH HOH . P 7 HOH E 2 202 17 HOH HOH . P 7 HOH E 3 203 44 HOH HOH . P 7 HOH E 4 204 170 HOH HOH . P 7 HOH E 5 205 4 HOH HOH . P 7 HOH E 6 206 43 HOH HOH . P 7 HOH E 7 207 21 HOH HOH . P 7 HOH E 8 208 100 HOH HOH . P 7 HOH E 9 209 5 HOH HOH . P 7 HOH E 10 210 56 HOH HOH . P 7 HOH E 11 211 43 HOH HOH . P 7 HOH E 12 212 45 HOH HOH . P 7 HOH E 13 213 35 HOH HOH . P 7 HOH E 14 214 99 HOH HOH . P 7 HOH E 15 215 128 HOH HOH . P 7 HOH E 16 216 53 HOH HOH . P 7 HOH E 17 217 67 HOH HOH . P 7 HOH E 18 218 44 HOH HOH . P 7 HOH E 19 219 118 HOH HOH . P 7 HOH E 20 220 168 HOH HOH . P 7 HOH E 21 221 34 HOH HOH . P 7 HOH E 22 222 2 HOH HOH . P 7 HOH E 23 223 54 HOH HOH . P 7 HOH E 24 224 92 HOH HOH . P 7 HOH E 25 225 167 HOH HOH . P 7 HOH E 26 226 88 HOH HOH . P 7 HOH E 27 227 68 HOH HOH . P 7 HOH E 28 228 165 HOH HOH . P 7 HOH E 29 229 14 HOH HOH . P 7 HOH E 30 230 47 HOH HOH . P 7 HOH E 31 231 18 HOH HOH . P 7 HOH E 32 232 135 HOH HOH . P 7 HOH E 33 233 101 HOH HOH . P 7 HOH E 34 234 90 HOH HOH . P 7 HOH E 35 235 60 HOH HOH . P 7 HOH E 36 236 16 HOH HOH . P 7 HOH E 37 237 114 HOH HOH . P 7 HOH E 38 238 63 HOH HOH . P 7 HOH E 39 239 6 HOH HOH . P 7 HOH E 40 240 166 HOH HOH . P 7 HOH E 41 241 85 HOH HOH . P 7 HOH E 42 242 48 HOH HOH . P 7 HOH E 43 243 76 HOH HOH . P 7 HOH E 44 244 10 HOH HOH . P 7 HOH E 45 245 89 HOH HOH . P 7 HOH E 46 246 98 HOH HOH . P 7 HOH E 47 247 162 HOH HOH . P 7 HOH E 48 248 22 HOH HOH . P 7 HOH E 49 249 107 HOH HOH . Q 7 HOH F 1 201 108 HOH HOH . Q 7 HOH F 2 202 60 HOH HOH . Q 7 HOH F 3 203 17 HOH HOH . Q 7 HOH F 4 204 151 HOH HOH . Q 7 HOH F 5 205 164 HOH HOH . Q 7 HOH F 6 206 40 HOH HOH . Q 7 HOH F 7 207 160 HOH HOH . Q 7 HOH F 8 208 54 HOH HOH . Q 7 HOH F 9 209 50 HOH HOH . Q 7 HOH F 10 210 14 HOH HOH . Q 7 HOH F 11 211 59 HOH HOH . Q 7 HOH F 12 212 81 HOH HOH . Q 7 HOH F 13 213 121 HOH HOH . Q 7 HOH F 14 214 110 HOH HOH . Q 7 HOH F 15 215 69 HOH HOH . Q 7 HOH F 16 216 27 HOH HOH . Q 7 HOH F 17 217 177 HOH HOH . Q 7 HOH F 18 218 22 HOH HOH . Q 7 HOH F 19 219 11 HOH HOH . Q 7 HOH F 20 220 26 HOH HOH . Q 7 HOH F 21 221 45 HOH HOH . Q 7 HOH F 22 222 39 HOH HOH . Q 7 HOH F 23 223 109 HOH HOH . Q 7 HOH F 24 224 150 HOH HOH . Q 7 HOH F 25 225 36 HOH HOH . Q 7 HOH F 26 226 122 HOH HOH . Q 7 HOH F 27 227 127 HOH HOH . Q 7 HOH F 28 228 129 HOH HOH . Q 7 HOH F 29 229 23 HOH HOH . Q 7 HOH F 30 230 125 HOH HOH . Q 7 HOH F 31 231 163 HOH HOH . Q 7 HOH F 32 232 72 HOH HOH . Q 7 HOH F 33 233 71 HOH HOH . Q 7 HOH F 34 234 106 HOH HOH . Q 7 HOH F 35 235 138 HOH HOH . Q 7 HOH F 36 236 142 HOH HOH . Q 7 HOH F 37 237 131 HOH HOH . Q 7 HOH F 38 238 137 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 5 _atom_site.Cartn_x 12.756 _atom_site.Cartn_y 38.402 _atom_site.Cartn_z -9.145 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.76 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 702 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #