data_6GLA
#
_model_server_result.job_id            kCA1uL4kCIMjAaA7IhpFyw 
_model_server_result.datetime_utc      '2024-11-22 10:38:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gla 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1202}' 
#
_entry.id    6GLA 
#
_exptl.entry_id    6GLA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              136.151 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-phenylurea 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.37 
_cell.angle_gamma         90 
_cell.entry_id            6GLA 
_cell.length_a            41.951 
_cell.length_b            61.358 
_cell.length_c            100.434 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GLA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,O 1 1 
B,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 L N N 
#
_chem_comp.formula           'C7 H8 N2 O' 
_chem_comp.formula_weight    136.151 
_chem_comp.id                PHU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-phenylurea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Phenylurea 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 PHU doub 319 n n 
C1 N2 PHU sing 320 n n 
C1 N1 PHU sing 321 n n 
C3 C2 PHU doub 322 n y 
N1 C2 PHU sing 323 n n 
C2 C4 PHU sing 324 n y 
C3 C6 PHU sing 325 n y 
C3 H3 PHU sing 326 n n 
C4 C5 PHU doub 327 n y 
C4 H4 PHU sing 328 n n 
C7 C5 PHU sing 329 n y 
C5 H5 PHU sing 330 n n 
C6 C7 PHU doub 331 n y 
C6 H6 PHU sing 332 n n 
C7 H7 PHU sing 333 n n 
N1 HN1 PHU sing 334 n n 
N2 HN2 PHU sing 335 n n 
N2 HN2A PHU sing 336 n n 
#
_atom_sites.entry_id                     6GLA 
_atom_sites.fract_transf_matrix[1][1]    0.023837 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000986 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016298 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009965 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 F4B A 1 1201 1 F4B XXX . 
D 3 PHU A 1 1202 1 PHU YYY . 
E 4 EDO A 1 1203 5 EDO EDO . 
F 4 EDO A 1 1204 6 EDO EDO . 
G 4 EDO A 1 1205 7 EDO EDO . 
H 4 EDO A 1 1206 8 EDO EDO . 
I 4 EDO A 1 1207 9 EDO EDO . 
J 4 EDO A 1 1208 10 EDO EDO . 
K 2 F4B B 1 1201 2 F4B XXX . 
L 3 PHU B 1 1202 2 PHU YYY . 
M 4 EDO B 1 1203 11 EDO EDO . 
N 4 EDO B 1 1204 12 EDO EDO . 
O 5 HOH A 1 1301 136 HOH HOH . 
O 5 HOH A 2 1302 240 HOH HOH . 
O 5 HOH A 3 1303 118 HOH HOH . 
O 5 HOH A 4 1304 237 HOH HOH . 
O 5 HOH A 5 1305 154 HOH HOH . 
O 5 HOH A 6 1306 55 HOH HOH . 
O 5 HOH A 7 1307 59 HOH HOH . 
O 5 HOH A 8 1308 193 HOH HOH . 
O 5 HOH A 9 1309 98 HOH HOH . 
O 5 HOH A 10 1310 91 HOH HOH . 
O 5 HOH A 11 1311 70 HOH HOH . 
O 5 HOH A 12 1312 108 HOH HOH . 
O 5 HOH A 13 1313 45 HOH HOH . 
O 5 HOH A 14 1314 198 HOH HOH . 
O 5 HOH A 15 1315 189 HOH HOH . 
O 5 HOH A 16 1316 76 HOH HOH . 
O 5 HOH A 17 1317 265 HOH HOH . 
O 5 HOH A 18 1318 42 HOH HOH . 
O 5 HOH A 19 1319 10 HOH HOH . 
O 5 HOH A 20 1320 66 HOH HOH . 
O 5 HOH A 21 1321 187 HOH HOH . 
O 5 HOH A 22 1322 186 HOH HOH . 
O 5 HOH A 23 1323 1 HOH HOH . 
O 5 HOH A 24 1324 114 HOH HOH . 
O 5 HOH A 25 1325 159 HOH HOH . 
O 5 HOH A 26 1326 102 HOH HOH . 
O 5 HOH A 27 1327 130 HOH HOH . 
O 5 HOH A 28 1328 245 HOH HOH . 
O 5 HOH A 29 1329 131 HOH HOH . 
O 5 HOH A 30 1330 24 HOH HOH . 
O 5 HOH A 31 1331 236 HOH HOH . 
O 5 HOH A 32 1332 21 HOH HOH . 
O 5 HOH A 33 1333 27 HOH HOH . 
O 5 HOH A 34 1334 74 HOH HOH . 
O 5 HOH A 35 1335 67 HOH HOH . 
O 5 HOH A 36 1336 195 HOH HOH . 
O 5 HOH A 37 1337 29 HOH HOH . 
O 5 HOH A 38 1338 149 HOH HOH . 
O 5 HOH A 39 1339 47 HOH HOH . 
O 5 HOH A 40 1340 111 HOH HOH . 
O 5 HOH A 41 1341 156 HOH HOH . 
O 5 HOH A 42 1342 231 HOH HOH . 
O 5 HOH A 43 1343 208 HOH HOH . 
O 5 HOH A 44 1344 96 HOH HOH . 
O 5 HOH A 45 1345 33 HOH HOH . 
O 5 HOH A 46 1346 174 HOH HOH . 
O 5 HOH A 47 1347 155 HOH HOH . 
O 5 HOH A 48 1348 95 HOH HOH . 
O 5 HOH A 49 1349 105 HOH HOH . 
O 5 HOH A 50 1350 139 HOH HOH . 
O 5 HOH A 51 1351 146 HOH HOH . 
O 5 HOH A 52 1352 15 HOH HOH . 
O 5 HOH A 53 1353 125 HOH HOH . 
O 5 HOH A 54 1354 239 HOH HOH . 
O 5 HOH A 55 1355 4 HOH HOH . 
O 5 HOH A 56 1356 65 HOH HOH . 
O 5 HOH A 57 1357 143 HOH HOH . 
O 5 HOH A 58 1358 227 HOH HOH . 
O 5 HOH A 59 1359 116 HOH HOH . 
O 5 HOH A 60 1360 172 HOH HOH . 
O 5 HOH A 61 1361 53 HOH HOH . 
O 5 HOH A 62 1362 127 HOH HOH . 
O 5 HOH A 63 1363 14 HOH HOH . 
O 5 HOH A 64 1364 242 HOH HOH . 
O 5 HOH A 65 1365 169 HOH HOH . 
O 5 HOH A 66 1366 25 HOH HOH . 
O 5 HOH A 67 1367 215 HOH HOH . 
O 5 HOH A 68 1368 123 HOH HOH . 
O 5 HOH A 69 1369 99 HOH HOH . 
O 5 HOH A 70 1370 31 HOH HOH . 
O 5 HOH A 71 1371 90 HOH HOH . 
O 5 HOH A 72 1372 210 HOH HOH . 
O 5 HOH A 73 1373 211 HOH HOH . 
O 5 HOH A 74 1374 221 HOH HOH . 
O 5 HOH A 75 1375 103 HOH HOH . 
O 5 HOH A 76 1376 11 HOH HOH . 
O 5 HOH A 77 1377 26 HOH HOH . 
O 5 HOH A 78 1378 78 HOH HOH . 
O 5 HOH A 79 1379 134 HOH HOH . 
O 5 HOH A 80 1380 165 HOH HOH . 
O 5 HOH A 81 1381 135 HOH HOH . 
O 5 HOH A 82 1382 162 HOH HOH . 
O 5 HOH A 83 1383 160 HOH HOH . 
O 5 HOH A 84 1384 52 HOH HOH . 
O 5 HOH A 85 1385 60 HOH HOH . 
O 5 HOH A 86 1386 40 HOH HOH . 
O 5 HOH A 87 1387 209 HOH HOH . 
O 5 HOH A 88 1388 244 HOH HOH . 
O 5 HOH A 89 1389 46 HOH HOH . 
O 5 HOH A 90 1390 35 HOH HOH . 
O 5 HOH A 91 1391 142 HOH HOH . 
O 5 HOH A 92 1392 93 HOH HOH . 
O 5 HOH A 93 1393 115 HOH HOH . 
O 5 HOH A 94 1394 238 HOH HOH . 
O 5 HOH A 95 1395 138 HOH HOH . 
O 5 HOH A 96 1396 19 HOH HOH . 
O 5 HOH A 97 1397 22 HOH HOH . 
O 5 HOH A 98 1398 217 HOH HOH . 
O 5 HOH A 99 1399 13 HOH HOH . 
O 5 HOH A 100 1400 235 HOH HOH . 
O 5 HOH A 101 1401 79 HOH HOH . 
O 5 HOH A 102 1402 220 HOH HOH . 
O 5 HOH A 103 1403 243 HOH HOH . 
O 5 HOH A 104 1404 185 HOH HOH . 
O 5 HOH A 105 1405 140 HOH HOH . 
O 5 HOH A 106 1406 216 HOH HOH . 
O 5 HOH A 107 1407 89 HOH HOH . 
O 5 HOH A 108 1408 168 HOH HOH . 
O 5 HOH A 109 1409 97 HOH HOH . 
O 5 HOH A 110 1410 223 HOH HOH . 
O 5 HOH A 111 1411 69 HOH HOH . 
O 5 HOH A 112 1412 190 HOH HOH . 
O 5 HOH A 113 1413 192 HOH HOH . 
O 5 HOH A 114 1414 241 HOH HOH . 
O 5 HOH A 115 1415 205 HOH HOH . 
O 5 HOH A 116 1416 181 HOH HOH . 
O 5 HOH A 117 1417 113 HOH HOH . 
O 5 HOH A 118 1418 82 HOH HOH . 
O 5 HOH A 119 1419 222 HOH HOH . 
P 5 HOH B 1 1301 166 HOH HOH . 
P 5 HOH B 2 1302 132 HOH HOH . 
P 5 HOH B 3 1303 163 HOH HOH . 
P 5 HOH B 4 1304 251 HOH HOH . 
P 5 HOH B 5 1305 2 HOH HOH . 
P 5 HOH B 6 1306 3 HOH HOH . 
P 5 HOH B 7 1307 122 HOH HOH . 
P 5 HOH B 8 1308 62 HOH HOH . 
P 5 HOH B 9 1309 153 HOH HOH . 
P 5 HOH B 10 1310 194 HOH HOH . 
P 5 HOH B 11 1311 37 HOH HOH . 
P 5 HOH B 12 1312 214 HOH HOH . 
P 5 HOH B 13 1313 262 HOH HOH . 
P 5 HOH B 14 1314 106 HOH HOH . 
P 5 HOH B 15 1315 48 HOH HOH . 
P 5 HOH B 16 1316 5 HOH HOH . 
P 5 HOH B 17 1317 263 HOH HOH . 
P 5 HOH B 18 1318 8 HOH HOH . 
P 5 HOH B 19 1319 85 HOH HOH . 
P 5 HOH B 20 1320 30 HOH HOH . 
P 5 HOH B 21 1321 12 HOH HOH . 
P 5 HOH B 22 1322 157 HOH HOH . 
P 5 HOH B 23 1323 43 HOH HOH . 
P 5 HOH B 24 1324 147 HOH HOH . 
P 5 HOH B 25 1325 248 HOH HOH . 
P 5 HOH B 26 1326 233 HOH HOH . 
P 5 HOH B 27 1327 148 HOH HOH . 
P 5 HOH B 28 1328 119 HOH HOH . 
P 5 HOH B 29 1329 173 HOH HOH . 
P 5 HOH B 30 1330 158 HOH HOH . 
P 5 HOH B 31 1331 54 HOH HOH . 
P 5 HOH B 32 1332 101 HOH HOH . 
P 5 HOH B 33 1333 57 HOH HOH . 
P 5 HOH B 34 1334 7 HOH HOH . 
P 5 HOH B 35 1335 83 HOH HOH . 
P 5 HOH B 36 1336 167 HOH HOH . 
P 5 HOH B 37 1337 56 HOH HOH . 
P 5 HOH B 38 1338 104 HOH HOH . 
P 5 HOH B 39 1339 128 HOH HOH . 
P 5 HOH B 40 1340 141 HOH HOH . 
P 5 HOH B 41 1341 164 HOH HOH . 
P 5 HOH B 42 1342 110 HOH HOH . 
P 5 HOH B 43 1343 144 HOH HOH . 
P 5 HOH B 44 1344 252 HOH HOH . 
P 5 HOH B 45 1345 150 HOH HOH . 
P 5 HOH B 46 1346 258 HOH HOH . 
P 5 HOH B 47 1347 178 HOH HOH . 
P 5 HOH B 48 1348 151 HOH HOH . 
P 5 HOH B 49 1349 253 HOH HOH . 
P 5 HOH B 50 1350 20 HOH HOH . 
P 5 HOH B 51 1351 170 HOH HOH . 
P 5 HOH B 52 1352 28 HOH HOH . 
P 5 HOH B 53 1353 188 HOH HOH . 
P 5 HOH B 54 1354 68 HOH HOH . 
P 5 HOH B 55 1355 254 HOH HOH . 
P 5 HOH B 56 1356 34 HOH HOH . 
P 5 HOH B 57 1357 23 HOH HOH . 
P 5 HOH B 58 1358 75 HOH HOH . 
P 5 HOH B 59 1359 86 HOH HOH . 
P 5 HOH B 60 1360 124 HOH HOH . 
P 5 HOH B 61 1361 39 HOH HOH . 
P 5 HOH B 62 1362 80 HOH HOH . 
P 5 HOH B 63 1363 18 HOH HOH . 
P 5 HOH B 64 1364 175 HOH HOH . 
P 5 HOH B 65 1365 107 HOH HOH . 
P 5 HOH B 66 1366 161 HOH HOH . 
P 5 HOH B 67 1367 259 HOH HOH . 
P 5 HOH B 68 1368 16 HOH HOH . 
P 5 HOH B 69 1369 109 HOH HOH . 
P 5 HOH B 70 1370 145 HOH HOH . 
P 5 HOH B 71 1371 63 HOH HOH . 
P 5 HOH B 72 1372 58 HOH HOH . 
P 5 HOH B 73 1373 137 HOH HOH . 
P 5 HOH B 74 1374 41 HOH HOH . 
P 5 HOH B 75 1375 117 HOH HOH . 
P 5 HOH B 76 1376 256 HOH HOH . 
P 5 HOH B 77 1377 203 HOH HOH . 
P 5 HOH B 78 1378 17 HOH HOH . 
P 5 HOH B 79 1379 264 HOH HOH . 
P 5 HOH B 80 1380 261 HOH HOH . 
P 5 HOH B 81 1381 112 HOH HOH . 
P 5 HOH B 82 1382 38 HOH HOH . 
P 5 HOH B 83 1383 230 HOH HOH . 
P 5 HOH B 84 1384 50 HOH HOH . 
P 5 HOH B 85 1385 100 HOH HOH . 
P 5 HOH B 86 1386 44 HOH HOH . 
P 5 HOH B 87 1387 232 HOH HOH . 
P 5 HOH B 88 1388 6 HOH HOH . 
P 5 HOH B 89 1389 32 HOH HOH . 
P 5 HOH B 90 1390 266 HOH HOH . 
P 5 HOH B 91 1391 249 HOH HOH . 
P 5 HOH B 92 1392 179 HOH HOH . 
P 5 HOH B 93 1393 84 HOH HOH . 
P 5 HOH B 94 1394 260 HOH HOH . 
P 5 HOH B 95 1395 81 HOH HOH . 
P 5 HOH B 96 1396 257 HOH HOH . 
P 5 HOH B 97 1397 92 HOH HOH . 
P 5 HOH B 98 1398 197 HOH HOH . 
P 5 HOH B 99 1399 250 HOH HOH . 
P 5 HOH B 100 1400 120 HOH HOH . 
P 5 HOH B 101 1401 129 HOH HOH . 
P 5 HOH B 102 1402 87 HOH HOH . 
P 5 HOH B 103 1403 88 HOH HOH . 
P 5 HOH B 104 1404 73 HOH HOH . 
P 5 HOH B 105 1405 247 HOH HOH . 
P 5 HOH B 106 1406 184 HOH HOH . 
P 5 HOH B 107 1407 219 HOH HOH . 
P 5 HOH B 108 1408 218 HOH HOH . 
P 5 HOH B 109 1409 226 HOH HOH . 
P 5 HOH B 110 1410 182 HOH HOH . 
P 5 HOH B 111 1411 255 HOH HOH . 
P 5 HOH B 112 1412 225 HOH HOH . 
P 5 HOH B 113 1413 224 HOH HOH . 
P 5 HOH B 114 1414 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PHU . . . D 3 20.009 24.606 15.366 1 19.73 ? C1 PHU 1202 A 1 
HETATM 2 C C2 PHU . . . D 3 19.791 27.074 15.374 1 19.73 ? C2 PHU 1202 A 1 
HETATM 3 C C3 PHU . . . D 3 18.9 28 14.852 1 19.79 ? C3 PHU 1202 A 1 
HETATM 4 C C4 PHU . . . D 3 20.518 27.39 16.516 1 21.08 ? C4 PHU 1202 A 1 
HETATM 5 C C5 PHU . . . D 3 20.336 28.614 17.134 1 21.95 ? C5 PHU 1202 A 1 
HETATM 6 C C6 PHU . . . D 3 18.741 29.229 15.468 1 21.42 ? C6 PHU 1202 A 1 
HETATM 7 C C7 PHU . . . D 3 19.448 29.531 16.616 1 22.1 ? C7 PHU 1202 A 1 
HETATM 8 N N1 PHU . . . D 3 19.907 25.81 14.75 1 18.89 ? N1 PHU 1202 A 1 
HETATM 9 N N2 PHU . . . D 3 20.023 23.56 14.545 1 19.1 ? N2 PHU 1202 A 1 
HETATM 10 O O1 PHU . . . D 3 20.048 24.5 16.605 1 19.51 ? O1 PHU 1202 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#