data_6GLB
#
_model_server_result.job_id            qj119yCG1hw51dy3pbgAPw 
_model_server_result.datetime_utc      '2024-10-18 04:23:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6glb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1202}' 
#
_entry.id    6GLB 
#
_exptl.entry_id    6GLB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              136.151 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-phenylurea 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         91.74 
_cell.angle_beta          90.28 
_cell.angle_gamma         92.76 
_cell.entry_id            6GLB 
_cell.length_a            41.849 
_cell.length_b            50.309 
_cell.length_c            61.588 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GLB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
_chem_comp.formula           'C7 H8 N2 O' 
_chem_comp.formula_weight    136.151 
_chem_comp.id                PHU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-phenylurea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Phenylurea 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 PHU doub 321 n n 
C1 N2 PHU sing 322 n n 
C1 N1 PHU sing 323 n n 
C3 C2 PHU doub 324 n y 
N1 C2 PHU sing 325 n n 
C2 C4 PHU sing 326 n y 
C3 C6 PHU sing 327 n y 
C3 H3 PHU sing 328 n n 
C4 C5 PHU doub 329 n y 
C4 H4 PHU sing 330 n n 
C7 C5 PHU sing 331 n y 
C5 H5 PHU sing 332 n n 
C6 C7 PHU doub 333 n y 
C6 H6 PHU sing 334 n n 
C7 H7 PHU sing 335 n n 
N1 HN1 PHU sing 336 n n 
N2 HN2 PHU sing 337 n n 
N2 HN2A PHU sing 338 n n 
#
_atom_sites.entry_id                     6GLB 
_atom_sites.fract_transf_matrix[1][1]    0.023896 
_atom_sites.fract_transf_matrix[1][2]    0.001152 
_atom_sites.fract_transf_matrix[1][3]    0.000152 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0199 
_atom_sites.fract_transf_matrix[2][3]    0.00061 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016245 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 F48 A 1 1201 1 F48 XXX . 
D 3 PHU A 1 1202 1 PHU YYY . 
E 4 EDO A 1 1203 5 EDO EDO . 
F 4 EDO A 1 1204 6 EDO EDO . 
G 4 EDO A 1 1205 7 EDO EDO . 
H 2 F48 B 1 1201 2 F48 XXX . 
I 3 PHU B 1 1202 2 PHU YYY . 
J 4 EDO B 1 1203 8 EDO EDO . 
K 4 EDO B 1 1204 9 EDO EDO . 
L 5 HOH A 1 1301 221 HOH HOH . 
L 5 HOH A 2 1302 240 HOH HOH . 
L 5 HOH A 3 1303 242 HOH HOH . 
L 5 HOH A 4 1304 136 HOH HOH . 
L 5 HOH A 5 1305 225 HOH HOH . 
L 5 HOH A 6 1306 29 HOH HOH . 
L 5 HOH A 7 1307 109 HOH HOH . 
L 5 HOH A 8 1308 74 HOH HOH . 
L 5 HOH A 9 1309 22 HOH HOH . 
L 5 HOH A 10 1310 241 HOH HOH . 
L 5 HOH A 11 1311 128 HOH HOH . 
L 5 HOH A 12 1312 104 HOH HOH . 
L 5 HOH A 13 1313 185 HOH HOH . 
L 5 HOH A 14 1314 152 HOH HOH . 
L 5 HOH A 15 1315 98 HOH HOH . 
L 5 HOH A 16 1316 59 HOH HOH . 
L 5 HOH A 17 1317 174 HOH HOH . 
L 5 HOH A 18 1318 235 HOH HOH . 
L 5 HOH A 19 1319 234 HOH HOH . 
L 5 HOH A 20 1320 187 HOH HOH . 
L 5 HOH A 21 1321 154 HOH HOH . 
L 5 HOH A 22 1322 233 HOH HOH . 
L 5 HOH A 23 1323 158 HOH HOH . 
L 5 HOH A 24 1324 14 HOH HOH . 
L 5 HOH A 25 1325 176 HOH HOH . 
L 5 HOH A 26 1326 58 HOH HOH . 
L 5 HOH A 27 1327 112 HOH HOH . 
L 5 HOH A 28 1328 67 HOH HOH . 
L 5 HOH A 29 1329 31 HOH HOH . 
L 5 HOH A 30 1330 153 HOH HOH . 
L 5 HOH A 31 1331 229 HOH HOH . 
L 5 HOH A 32 1332 180 HOH HOH . 
L 5 HOH A 33 1333 17 HOH HOH . 
L 5 HOH A 34 1334 68 HOH HOH . 
L 5 HOH A 35 1335 143 HOH HOH . 
L 5 HOH A 36 1336 237 HOH HOH . 
L 5 HOH A 37 1337 41 HOH HOH . 
L 5 HOH A 38 1338 201 HOH HOH . 
L 5 HOH A 39 1339 97 HOH HOH . 
L 5 HOH A 40 1340 5 HOH HOH . 
L 5 HOH A 41 1341 151 HOH HOH . 
L 5 HOH A 42 1342 56 HOH HOH . 
L 5 HOH A 43 1343 15 HOH HOH . 
L 5 HOH A 44 1344 163 HOH HOH . 
L 5 HOH A 45 1345 129 HOH HOH . 
L 5 HOH A 46 1346 228 HOH HOH . 
L 5 HOH A 47 1347 57 HOH HOH . 
L 5 HOH A 48 1348 72 HOH HOH . 
L 5 HOH A 49 1349 71 HOH HOH . 
L 5 HOH A 50 1350 146 HOH HOH . 
L 5 HOH A 51 1351 86 HOH HOH . 
L 5 HOH A 52 1352 53 HOH HOH . 
L 5 HOH A 53 1353 18 HOH HOH . 
L 5 HOH A 54 1354 115 HOH HOH . 
L 5 HOH A 55 1355 232 HOH HOH . 
L 5 HOH A 56 1356 62 HOH HOH . 
L 5 HOH A 57 1357 82 HOH HOH . 
L 5 HOH A 58 1358 133 HOH HOH . 
L 5 HOH A 59 1359 166 HOH HOH . 
L 5 HOH A 60 1360 19 HOH HOH . 
L 5 HOH A 61 1361 173 HOH HOH . 
L 5 HOH A 62 1362 32 HOH HOH . 
L 5 HOH A 63 1363 227 HOH HOH . 
L 5 HOH A 64 1364 178 HOH HOH . 
L 5 HOH A 65 1365 155 HOH HOH . 
L 5 HOH A 66 1366 49 HOH HOH . 
L 5 HOH A 67 1367 141 HOH HOH . 
L 5 HOH A 68 1368 64 HOH HOH . 
L 5 HOH A 69 1369 33 HOH HOH . 
L 5 HOH A 70 1370 162 HOH HOH . 
L 5 HOH A 71 1371 35 HOH HOH . 
L 5 HOH A 72 1372 3 HOH HOH . 
L 5 HOH A 73 1373 107 HOH HOH . 
L 5 HOH A 74 1374 61 HOH HOH . 
L 5 HOH A 75 1375 135 HOH HOH . 
L 5 HOH A 76 1376 27 HOH HOH . 
L 5 HOH A 77 1377 168 HOH HOH . 
L 5 HOH A 78 1378 239 HOH HOH . 
L 5 HOH A 79 1379 11 HOH HOH . 
L 5 HOH A 80 1380 60 HOH HOH . 
L 5 HOH A 81 1381 102 HOH HOH . 
L 5 HOH A 82 1382 65 HOH HOH . 
L 5 HOH A 83 1383 39 HOH HOH . 
L 5 HOH A 84 1384 73 HOH HOH . 
L 5 HOH A 85 1385 20 HOH HOH . 
L 5 HOH A 86 1386 48 HOH HOH . 
L 5 HOH A 87 1387 238 HOH HOH . 
L 5 HOH A 88 1388 243 HOH HOH . 
L 5 HOH A 89 1389 144 HOH HOH . 
L 5 HOH A 90 1390 43 HOH HOH . 
L 5 HOH A 91 1391 120 HOH HOH . 
L 5 HOH A 92 1392 90 HOH HOH . 
L 5 HOH A 93 1393 40 HOH HOH . 
L 5 HOH A 94 1394 45 HOH HOH . 
L 5 HOH A 95 1395 126 HOH HOH . 
L 5 HOH A 96 1396 147 HOH HOH . 
L 5 HOH A 97 1397 123 HOH HOH . 
L 5 HOH A 98 1398 130 HOH HOH . 
L 5 HOH A 99 1399 226 HOH HOH . 
L 5 HOH A 100 1400 114 HOH HOH . 
L 5 HOH A 101 1401 224 HOH HOH . 
L 5 HOH A 102 1402 79 HOH HOH . 
L 5 HOH A 103 1403 194 HOH HOH . 
L 5 HOH A 104 1404 192 HOH HOH . 
L 5 HOH A 105 1405 161 HOH HOH . 
L 5 HOH A 106 1406 220 HOH HOH . 
L 5 HOH A 107 1407 134 HOH HOH . 
L 5 HOH A 108 1408 63 HOH HOH . 
L 5 HOH A 109 1409 165 HOH HOH . 
L 5 HOH A 110 1410 231 HOH HOH . 
L 5 HOH A 111 1411 193 HOH HOH . 
L 5 HOH A 112 1412 184 HOH HOH . 
L 5 HOH A 113 1413 222 HOH HOH . 
L 5 HOH A 114 1414 251 HOH HOH . 
L 5 HOH A 115 1415 214 HOH HOH . 
L 5 HOH A 116 1416 77 HOH HOH . 
L 5 HOH A 117 1417 197 HOH HOH . 
L 5 HOH A 118 1418 196 HOH HOH . 
L 5 HOH A 119 1419 206 HOH HOH . 
L 5 HOH A 120 1420 230 HOH HOH . 
M 5 HOH B 1 1301 160 HOH HOH . 
M 5 HOH B 2 1302 257 HOH HOH . 
M 5 HOH B 3 1303 142 HOH HOH . 
M 5 HOH B 4 1304 34 HOH HOH . 
M 5 HOH B 5 1305 175 HOH HOH . 
M 5 HOH B 6 1306 249 HOH HOH . 
M 5 HOH B 7 1307 111 HOH HOH . 
M 5 HOH B 8 1308 91 HOH HOH . 
M 5 HOH B 9 1309 121 HOH HOH . 
M 5 HOH B 10 1310 69 HOH HOH . 
M 5 HOH B 11 1311 23 HOH HOH . 
M 5 HOH B 12 1312 24 HOH HOH . 
M 5 HOH B 13 1313 80 HOH HOH . 
M 5 HOH B 14 1314 4 HOH HOH . 
M 5 HOH B 15 1315 179 HOH HOH . 
M 5 HOH B 16 1316 26 HOH HOH . 
M 5 HOH B 17 1317 108 HOH HOH . 
M 5 HOH B 18 1318 87 HOH HOH . 
M 5 HOH B 19 1319 12 HOH HOH . 
M 5 HOH B 20 1320 99 HOH HOH . 
M 5 HOH B 21 1321 248 HOH HOH . 
M 5 HOH B 22 1322 44 HOH HOH . 
M 5 HOH B 23 1323 183 HOH HOH . 
M 5 HOH B 24 1324 255 HOH HOH . 
M 5 HOH B 25 1325 250 HOH HOH . 
M 5 HOH B 26 1326 94 HOH HOH . 
M 5 HOH B 27 1327 38 HOH HOH . 
M 5 HOH B 28 1328 198 HOH HOH . 
M 5 HOH B 29 1329 25 HOH HOH . 
M 5 HOH B 30 1330 83 HOH HOH . 
M 5 HOH B 31 1331 139 HOH HOH . 
M 5 HOH B 32 1332 105 HOH HOH . 
M 5 HOH B 33 1333 127 HOH HOH . 
M 5 HOH B 34 1334 88 HOH HOH . 
M 5 HOH B 35 1335 10 HOH HOH . 
M 5 HOH B 36 1336 70 HOH HOH . 
M 5 HOH B 37 1337 254 HOH HOH . 
M 5 HOH B 38 1338 188 HOH HOH . 
M 5 HOH B 39 1339 7 HOH HOH . 
M 5 HOH B 40 1340 169 HOH HOH . 
M 5 HOH B 41 1341 103 HOH HOH . 
M 5 HOH B 42 1342 84 HOH HOH . 
M 5 HOH B 43 1343 75 HOH HOH . 
M 5 HOH B 44 1344 156 HOH HOH . 
M 5 HOH B 45 1345 47 HOH HOH . 
M 5 HOH B 46 1346 252 HOH HOH . 
M 5 HOH B 47 1347 247 HOH HOH . 
M 5 HOH B 48 1348 116 HOH HOH . 
M 5 HOH B 49 1349 118 HOH HOH . 
M 5 HOH B 50 1350 191 HOH HOH . 
M 5 HOH B 51 1351 1 HOH HOH . 
M 5 HOH B 52 1352 28 HOH HOH . 
M 5 HOH B 53 1353 125 HOH HOH . 
M 5 HOH B 54 1354 171 HOH HOH . 
M 5 HOH B 55 1355 42 HOH HOH . 
M 5 HOH B 56 1356 117 HOH HOH . 
M 5 HOH B 57 1357 6 HOH HOH . 
M 5 HOH B 58 1358 76 HOH HOH . 
M 5 HOH B 59 1359 145 HOH HOH . 
M 5 HOH B 60 1360 172 HOH HOH . 
M 5 HOH B 61 1361 208 HOH HOH . 
M 5 HOH B 62 1362 13 HOH HOH . 
M 5 HOH B 63 1363 245 HOH HOH . 
M 5 HOH B 64 1364 50 HOH HOH . 
M 5 HOH B 65 1365 36 HOH HOH . 
M 5 HOH B 66 1366 30 HOH HOH . 
M 5 HOH B 67 1367 8 HOH HOH . 
M 5 HOH B 68 1368 96 HOH HOH . 
M 5 HOH B 69 1369 181 HOH HOH . 
M 5 HOH B 70 1370 85 HOH HOH . 
M 5 HOH B 71 1371 119 HOH HOH . 
M 5 HOH B 72 1372 55 HOH HOH . 
M 5 HOH B 73 1373 81 HOH HOH . 
M 5 HOH B 74 1374 138 HOH HOH . 
M 5 HOH B 75 1375 106 HOH HOH . 
M 5 HOH B 76 1376 16 HOH HOH . 
M 5 HOH B 77 1377 253 HOH HOH . 
M 5 HOH B 78 1378 199 HOH HOH . 
M 5 HOH B 79 1379 177 HOH HOH . 
M 5 HOH B 80 1380 21 HOH HOH . 
M 5 HOH B 81 1381 110 HOH HOH . 
M 5 HOH B 82 1382 223 HOH HOH . 
M 5 HOH B 83 1383 54 HOH HOH . 
M 5 HOH B 84 1384 202 HOH HOH . 
M 5 HOH B 85 1385 37 HOH HOH . 
M 5 HOH B 86 1386 244 HOH HOH . 
M 5 HOH B 87 1387 159 HOH HOH . 
M 5 HOH B 88 1388 157 HOH HOH . 
M 5 HOH B 89 1389 190 HOH HOH . 
M 5 HOH B 90 1390 149 HOH HOH . 
M 5 HOH B 91 1391 246 HOH HOH . 
M 5 HOH B 92 1392 148 HOH HOH . 
M 5 HOH B 93 1393 101 HOH HOH . 
M 5 HOH B 94 1394 195 HOH HOH . 
M 5 HOH B 95 1395 203 HOH HOH . 
M 5 HOH B 96 1396 186 HOH HOH . 
M 5 HOH B 97 1397 140 HOH HOH . 
M 5 HOH B 98 1398 124 HOH HOH . 
M 5 HOH B 99 1399 52 HOH HOH . 
M 5 HOH B 100 1400 113 HOH HOH . 
M 5 HOH B 101 1401 95 HOH HOH . 
M 5 HOH B 102 1402 78 HOH HOH . 
M 5 HOH B 103 1403 9 HOH HOH . 
M 5 HOH B 104 1404 132 HOH HOH . 
M 5 HOH B 105 1405 122 HOH HOH . 
M 5 HOH B 106 1406 256 HOH HOH . 
M 5 HOH B 107 1407 170 HOH HOH . 
M 5 HOH B 108 1408 217 HOH HOH . 
M 5 HOH B 109 1409 205 HOH HOH . 
M 5 HOH B 110 1410 207 HOH HOH . 
M 5 HOH B 111 1411 189 HOH HOH . 
M 5 HOH B 112 1412 131 HOH HOH . 
M 5 HOH B 113 1413 204 HOH HOH . 
M 5 HOH B 114 1414 216 HOH HOH . 
M 5 HOH B 115 1415 100 HOH HOH . 
M 5 HOH B 116 1416 211 HOH HOH . 
M 5 HOH B 117 1417 210 HOH HOH . 
M 5 HOH B 118 1418 93 HOH HOH . 
M 5 HOH B 119 1419 236 HOH HOH . 
M 5 HOH B 120 1420 212 HOH HOH . 
M 5 HOH B 121 1421 218 HOH HOH . 
M 5 HOH B 122 1422 209 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PHU . . . I 3 18.014 65.636 -27.354 1 11.82 ? C1 PHU 1202 B 1 
HETATM 2 C C2 PHU . . . I 3 17.916 65.696 -29.866 1 13.98 ? C2 PHU 1202 B 1 
HETATM 3 C C3 PHU . . . I 3 17.154 65.136 -30.889 1 15.05 ? C3 PHU 1202 B 1 
HETATM 4 C C4 PHU . . . I 3 18.544 66.921 -30.076 1 14.13 ? C4 PHU 1202 B 1 
HETATM 5 C C5 PHU . . . I 3 18.354 67.599 -31.266 1 15.15 ? C5 PHU 1202 B 1 
HETATM 6 C C6 PHU . . . I 3 16.983 65.819 -32.082 1 15.22 ? C6 PHU 1202 B 1 
HETATM 7 C C7 PHU . . . I 3 17.564 67.058 -32.264 1 15.5 ? C7 PHU 1202 B 1 
HETATM 8 N N1 PHU . . . I 3 17.953 65.051 -28.605 1 12.3 ? N1 PHU 1202 B 1 
HETATM 9 N N2 PHU . . . I 3 17.96 64.786 -26.342 1 10.8 ? N2 PHU 1202 B 1 
HETATM 10 O O1 PHU . . . I 3 18.093 66.868 -27.184 1 11.53 ? O1 PHU 1202 B 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#