data_6GMC # _model_server_result.job_id Sd4cvbRkdws_xvuy_XsImQ _model_server_result.datetime_utc '2024-11-25 17:02:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6GMC # _exptl.entry_id 6GMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GMC _cell.length_a 97.348 _cell.length_b 97.348 _cell.length_c 80.363 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 104 n n C1 C2 EDO sing 105 n n C1 H11 EDO sing 106 n n C1 H12 EDO sing 107 n n O1 HO1 EDO sing 108 n n C2 O2 EDO sing 109 n n C2 H21 EDO sing 110 n n C2 H22 EDO sing 111 n n O2 HO2 EDO sing 112 n n # _atom_sites.entry_id 6GMC _atom_sites.fract_transf_matrix[1][1] 0.010272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 501 EDO EDO . C 2 EDO A 1 502 601 EDO EDO . D 2 EDO A 1 503 701 EDO EDO . E 2 EDO A 1 504 801 EDO EDO . F 3 FMN A 1 505 1 FMN FMN . G 4 C7C A 1 506 1 C7C C7C . H 5 HOH A 1 601 692 HOH HOH . H 5 HOH A 2 602 33 HOH HOH . H 5 HOH A 3 603 278 HOH HOH . H 5 HOH A 4 604 696 HOH HOH . H 5 HOH A 5 605 139 HOH HOH . H 5 HOH A 6 606 328 HOH HOH . H 5 HOH A 7 607 458 HOH HOH . H 5 HOH A 8 608 112 HOH HOH . H 5 HOH A 9 609 681 HOH HOH . H 5 HOH A 10 610 371 HOH HOH . H 5 HOH A 11 611 350 HOH HOH . H 5 HOH A 12 612 309 HOH HOH . H 5 HOH A 13 613 650 HOH HOH . H 5 HOH A 14 614 269 HOH HOH . H 5 HOH A 15 615 185 HOH HOH . H 5 HOH A 16 616 246 HOH HOH . H 5 HOH A 17 617 151 HOH HOH . H 5 HOH A 18 618 651 HOH HOH . H 5 HOH A 19 619 364 HOH HOH . H 5 HOH A 20 620 267 HOH HOH . H 5 HOH A 21 621 661 HOH HOH . H 5 HOH A 22 622 107 HOH HOH . H 5 HOH A 23 623 664 HOH HOH . H 5 HOH A 24 624 126 HOH HOH . H 5 HOH A 25 625 349 HOH HOH . H 5 HOH A 26 626 21 HOH HOH . H 5 HOH A 27 627 643 HOH HOH . H 5 HOH A 28 628 15 HOH HOH . H 5 HOH A 29 629 299 HOH HOH . H 5 HOH A 30 630 74 HOH HOH . H 5 HOH A 31 631 394 HOH HOH . H 5 HOH A 32 632 251 HOH HOH . H 5 HOH A 33 633 131 HOH HOH . H 5 HOH A 34 634 243 HOH HOH . H 5 HOH A 35 635 233 HOH HOH . H 5 HOH A 36 636 304 HOH HOH . H 5 HOH A 37 637 250 HOH HOH . H 5 HOH A 38 638 659 HOH HOH . H 5 HOH A 39 639 237 HOH HOH . H 5 HOH A 40 640 41 HOH HOH . H 5 HOH A 41 641 32 HOH HOH . H 5 HOH A 42 642 156 HOH HOH . H 5 HOH A 43 643 249 HOH HOH . H 5 HOH A 44 644 253 HOH HOH . H 5 HOH A 45 645 310 HOH HOH . H 5 HOH A 46 646 295 HOH HOH . H 5 HOH A 47 647 356 HOH HOH . H 5 HOH A 48 648 89 HOH HOH . H 5 HOH A 49 649 123 HOH HOH . H 5 HOH A 50 650 55 HOH HOH . H 5 HOH A 51 651 14 HOH HOH . H 5 HOH A 52 652 276 HOH HOH . H 5 HOH A 53 653 47 HOH HOH . H 5 HOH A 54 654 8 HOH HOH . H 5 HOH A 55 655 28 HOH HOH . H 5 HOH A 56 656 413 HOH HOH . H 5 HOH A 57 657 122 HOH HOH . H 5 HOH A 58 658 35 HOH HOH . H 5 HOH A 59 659 117 HOH HOH . H 5 HOH A 60 660 228 HOH HOH . H 5 HOH A 61 661 34 HOH HOH . H 5 HOH A 62 662 18 HOH HOH . H 5 HOH A 63 663 296 HOH HOH . H 5 HOH A 64 664 262 HOH HOH . H 5 HOH A 65 665 654 HOH HOH . H 5 HOH A 66 666 39 HOH HOH . H 5 HOH A 67 667 82 HOH HOH . H 5 HOH A 68 668 318 HOH HOH . H 5 HOH A 69 669 9 HOH HOH . H 5 HOH A 70 670 319 HOH HOH . H 5 HOH A 71 671 30 HOH HOH . H 5 HOH A 72 672 7 HOH HOH . H 5 HOH A 73 673 329 HOH HOH . H 5 HOH A 74 674 115 HOH HOH . H 5 HOH A 75 675 90 HOH HOH . H 5 HOH A 76 676 43 HOH HOH . H 5 HOH A 77 677 306 HOH HOH . H 5 HOH A 78 678 60 HOH HOH . H 5 HOH A 79 679 76 HOH HOH . H 5 HOH A 80 680 283 HOH HOH . H 5 HOH A 81 681 163 HOH HOH . H 5 HOH A 82 682 265 HOH HOH . H 5 HOH A 83 683 282 HOH HOH . H 5 HOH A 84 684 393 HOH HOH . H 5 HOH A 85 685 3 HOH HOH . H 5 HOH A 86 686 360 HOH HOH . H 5 HOH A 87 687 63 HOH HOH . H 5 HOH A 88 688 286 HOH HOH . H 5 HOH A 89 689 254 HOH HOH . H 5 HOH A 90 690 260 HOH HOH . H 5 HOH A 91 691 147 HOH HOH . H 5 HOH A 92 692 255 HOH HOH . H 5 HOH A 93 693 19 HOH HOH . H 5 HOH A 94 694 294 HOH HOH . H 5 HOH A 95 695 683 HOH HOH . H 5 HOH A 96 696 270 HOH HOH . H 5 HOH A 97 697 275 HOH HOH . H 5 HOH A 98 698 316 HOH HOH . H 5 HOH A 99 699 140 HOH HOH . H 5 HOH A 100 700 65 HOH HOH . H 5 HOH A 101 701 46 HOH HOH . H 5 HOH A 102 702 31 HOH HOH . H 5 HOH A 103 703 287 HOH HOH . H 5 HOH A 104 704 2 HOH HOH . H 5 HOH A 105 705 13 HOH HOH . H 5 HOH A 106 706 38 HOH HOH . H 5 HOH A 107 707 284 HOH HOH . H 5 HOH A 108 708 666 HOH HOH . H 5 HOH A 109 709 78 HOH HOH . H 5 HOH A 110 710 391 HOH HOH . H 5 HOH A 111 711 224 HOH HOH . H 5 HOH A 112 712 4 HOH HOH . H 5 HOH A 113 713 674 HOH HOH . H 5 HOH A 114 714 291 HOH HOH . H 5 HOH A 115 715 311 HOH HOH . H 5 HOH A 116 716 61 HOH HOH . H 5 HOH A 117 717 335 HOH HOH . H 5 HOH A 118 718 300 HOH HOH . H 5 HOH A 119 719 17 HOH HOH . H 5 HOH A 120 720 239 HOH HOH . H 5 HOH A 121 721 665 HOH HOH . H 5 HOH A 122 722 230 HOH HOH . H 5 HOH A 123 723 70 HOH HOH . H 5 HOH A 124 724 231 HOH HOH . H 5 HOH A 125 725 326 HOH HOH . H 5 HOH A 126 726 648 HOH HOH . H 5 HOH A 127 727 94 HOH HOH . H 5 HOH A 128 728 396 HOH HOH . H 5 HOH A 129 729 290 HOH HOH . H 5 HOH A 130 730 240 HOH HOH . H 5 HOH A 131 731 655 HOH HOH . H 5 HOH A 132 732 252 HOH HOH . H 5 HOH A 133 733 297 HOH HOH . H 5 HOH A 134 734 289 HOH HOH . H 5 HOH A 135 735 247 HOH HOH . H 5 HOH A 136 736 29 HOH HOH . H 5 HOH A 137 737 226 HOH HOH . H 5 HOH A 138 738 245 HOH HOH . H 5 HOH A 139 739 27 HOH HOH . H 5 HOH A 140 740 52 HOH HOH . H 5 HOH A 141 741 20 HOH HOH . H 5 HOH A 142 742 660 HOH HOH . H 5 HOH A 143 743 244 HOH HOH . H 5 HOH A 144 744 277 HOH HOH . H 5 HOH A 145 745 268 HOH HOH . H 5 HOH A 146 746 649 HOH HOH . H 5 HOH A 147 747 685 HOH HOH . H 5 HOH A 148 748 241 HOH HOH . H 5 HOH A 149 749 667 HOH HOH . H 5 HOH A 150 750 53 HOH HOH . H 5 HOH A 151 751 45 HOH HOH . H 5 HOH A 152 752 138 HOH HOH . H 5 HOH A 153 753 84 HOH HOH . H 5 HOH A 154 754 658 HOH HOH . H 5 HOH A 155 755 66 HOH HOH . H 5 HOH A 156 756 274 HOH HOH . H 5 HOH A 157 757 315 HOH HOH . H 5 HOH A 158 758 130 HOH HOH . H 5 HOH A 159 759 259 HOH HOH . H 5 HOH A 160 760 293 HOH HOH . H 5 HOH A 161 761 164 HOH HOH . H 5 HOH A 162 762 227 HOH HOH . H 5 HOH A 163 763 375 HOH HOH . H 5 HOH A 164 764 11 HOH HOH . H 5 HOH A 165 765 234 HOH HOH . H 5 HOH A 166 766 86 HOH HOH . H 5 HOH A 167 767 85 HOH HOH . H 5 HOH A 168 768 182 HOH HOH . H 5 HOH A 169 769 116 HOH HOH . H 5 HOH A 170 770 238 HOH HOH . H 5 HOH A 171 771 129 HOH HOH . H 5 HOH A 172 772 133 HOH HOH . H 5 HOH A 173 773 155 HOH HOH . H 5 HOH A 174 774 120 HOH HOH . H 5 HOH A 175 775 72 HOH HOH . H 5 HOH A 176 776 331 HOH HOH . H 5 HOH A 177 777 281 HOH HOH . H 5 HOH A 178 778 256 HOH HOH . H 5 HOH A 179 779 134 HOH HOH . H 5 HOH A 180 780 242 HOH HOH . H 5 HOH A 181 781 301 HOH HOH . H 5 HOH A 182 782 194 HOH HOH . H 5 HOH A 183 783 232 HOH HOH . H 5 HOH A 184 784 71 HOH HOH . H 5 HOH A 185 785 273 HOH HOH . H 5 HOH A 186 786 271 HOH HOH . H 5 HOH A 187 787 106 HOH HOH . H 5 HOH A 188 788 229 HOH HOH . H 5 HOH A 189 789 58 HOH HOH . H 5 HOH A 190 790 16 HOH HOH . H 5 HOH A 191 791 36 HOH HOH . H 5 HOH A 192 792 108 HOH HOH . H 5 HOH A 193 793 24 HOH HOH . H 5 HOH A 194 794 186 HOH HOH . H 5 HOH A 195 795 322 HOH HOH . H 5 HOH A 196 796 169 HOH HOH . H 5 HOH A 197 797 264 HOH HOH . H 5 HOH A 198 798 305 HOH HOH . H 5 HOH A 199 799 6 HOH HOH . H 5 HOH A 200 800 324 HOH HOH . H 5 HOH A 201 801 23 HOH HOH . H 5 HOH A 202 802 656 HOH HOH . H 5 HOH A 203 803 288 HOH HOH . H 5 HOH A 204 804 1 HOH HOH . H 5 HOH A 205 805 332 HOH HOH . H 5 HOH A 206 806 105 HOH HOH . H 5 HOH A 207 807 389 HOH HOH . H 5 HOH A 208 808 657 HOH HOH . H 5 HOH A 209 809 357 HOH HOH . H 5 HOH A 210 810 292 HOH HOH . H 5 HOH A 211 811 236 HOH HOH . H 5 HOH A 212 812 363 HOH HOH . H 5 HOH A 213 813 44 HOH HOH . H 5 HOH A 214 814 161 HOH HOH . H 5 HOH A 215 815 672 HOH HOH . H 5 HOH A 216 816 248 HOH HOH . H 5 HOH A 217 817 49 HOH HOH . H 5 HOH A 218 818 26 HOH HOH . H 5 HOH A 219 819 450 HOH HOH . H 5 HOH A 220 820 687 HOH HOH . H 5 HOH A 221 821 691 HOH HOH . H 5 HOH A 222 822 79 HOH HOH . H 5 HOH A 223 823 593 HOH HOH . H 5 HOH A 224 824 40 HOH HOH . H 5 HOH A 225 825 132 HOH HOH . H 5 HOH A 226 826 671 HOH HOH . H 5 HOH A 227 827 51 HOH HOH . H 5 HOH A 228 828 266 HOH HOH . H 5 HOH A 229 829 653 HOH HOH . H 5 HOH A 230 830 676 HOH HOH . H 5 HOH A 231 831 272 HOH HOH . H 5 HOH A 232 832 48 HOH HOH . H 5 HOH A 233 833 673 HOH HOH . H 5 HOH A 234 834 142 HOH HOH . H 5 HOH A 235 835 302 HOH HOH . H 5 HOH A 236 836 680 HOH HOH . H 5 HOH A 237 837 96 HOH HOH . H 5 HOH A 238 838 317 HOH HOH . H 5 HOH A 239 839 176 HOH HOH . H 5 HOH A 240 840 178 HOH HOH . H 5 HOH A 241 841 91 HOH HOH . H 5 HOH A 242 842 104 HOH HOH . H 5 HOH A 243 843 642 HOH HOH . H 5 HOH A 244 844 223 HOH HOH . H 5 HOH A 245 845 99 HOH HOH . H 5 HOH A 246 846 173 HOH HOH . H 5 HOH A 247 847 121 HOH HOH . H 5 HOH A 248 848 209 HOH HOH . H 5 HOH A 249 849 67 HOH HOH . H 5 HOH A 250 850 323 HOH HOH . H 5 HOH A 251 851 162 HOH HOH . H 5 HOH A 252 852 160 HOH HOH . H 5 HOH A 253 853 367 HOH HOH . H 5 HOH A 254 854 436 HOH HOH . H 5 HOH A 255 855 77 HOH HOH . H 5 HOH A 256 856 137 HOH HOH . H 5 HOH A 257 857 206 HOH HOH . H 5 HOH A 258 858 199 HOH HOH . H 5 HOH A 259 859 325 HOH HOH . H 5 HOH A 260 860 5 HOH HOH . H 5 HOH A 261 861 675 HOH HOH . H 5 HOH A 262 862 12 HOH HOH . H 5 HOH A 263 863 83 HOH HOH . H 5 HOH A 264 864 677 HOH HOH . H 5 HOH A 265 865 62 HOH HOH . H 5 HOH A 266 866 689 HOH HOH . H 5 HOH A 267 867 592 HOH HOH . H 5 HOH A 268 868 174 HOH HOH . H 5 HOH A 269 869 686 HOH HOH . H 5 HOH A 270 870 688 HOH HOH . H 5 HOH A 271 871 652 HOH HOH . H 5 HOH A 272 872 586 HOH HOH . H 5 HOH A 273 873 119 HOH HOH . H 5 HOH A 274 874 583 HOH HOH . H 5 HOH A 275 875 594 HOH HOH . H 5 HOH A 276 876 352 HOH HOH . H 5 HOH A 277 877 383 HOH HOH . H 5 HOH A 278 878 87 HOH HOH . H 5 HOH A 279 879 88 HOH HOH . H 5 HOH A 280 880 10 HOH HOH . H 5 HOH A 281 881 298 HOH HOH . H 5 HOH A 282 882 101 HOH HOH . H 5 HOH A 283 883 694 HOH HOH . H 5 HOH A 284 884 682 HOH HOH . H 5 HOH A 285 885 57 HOH HOH . H 5 HOH A 286 886 361 HOH HOH . H 5 HOH A 287 887 73 HOH HOH . H 5 HOH A 288 888 159 HOH HOH . H 5 HOH A 289 889 75 HOH HOH . H 5 HOH A 290 890 68 HOH HOH . H 5 HOH A 291 891 690 HOH HOH . H 5 HOH A 292 892 179 HOH HOH . H 5 HOH A 293 893 684 HOH HOH . H 5 HOH A 294 894 582 HOH HOH . H 5 HOH A 295 895 679 HOH HOH . H 5 HOH A 296 896 100 HOH HOH . H 5 HOH A 297 897 678 HOH HOH . H 5 HOH A 298 898 127 HOH HOH . H 5 HOH A 299 899 102 HOH HOH . H 5 HOH A 300 900 103 HOH HOH . H 5 HOH A 301 901 208 HOH HOH . H 5 HOH A 302 902 207 HOH HOH . H 5 HOH A 303 903 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 6.153 13.938 -49.53 1 22.69 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . D 2 7.016 13.149 -48.702 1 25 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . D 2 4.69 13.678 -49.163 1 20.61 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . D 2 4.47 14.099 -47.809 1 23.24 ? O2 EDO 503 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #