data_6GMI # _model_server_result.job_id ZsNzzbTmCc9i9xKPUlcl7Q _model_server_result.datetime_utc '2024-11-24 03:40:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6GMI # _exptl.entry_id 6GMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 807.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description {N-(4-{[2-(amino-kappaN)ethyl]sulfamoyl-kappaN}phenyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}(chloro)[(1,2,3,4,5-eta)-1,2,3,4,5-pentamethylcyclopentadienyl]iridium(III) _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GMI _cell.length_a 57.507 _cell.length_b 57.507 _cell.length_c 184.13 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.507 57.507 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.507 57.507 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 86 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 87 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id IR _struct_conn.ptnr2_label_comp_id IR3 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id IR3 _struct_conn.ptnr2_auth_seq_id 202 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.229 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H45 Cl Ir N5 O4 S2 2' _chem_comp.formula_weight 807.488 _chem_comp.id 4IR _chem_comp.mon_nstd_flag . _chem_comp.name {N-(4-{[2-(amino-kappaN)ethyl]sulfamoyl-kappaN}phenyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}(chloro)[(1,2,3,4,5-eta)-1,2,3,4,5-pentamethylcyclopentadienyl]iridium(III) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(4-{[(2-AMINOETHYL)AMINO]SULFONYL}PHENYL)-5-[(3AS,4S,6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL]PENTANAMIDE-(1,2,3,4,5,6-ETA)-PENTAMETHYLCYCLOHEXYL-CHLORO-IRIDIUM(III) # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 4IR sing 1 n n C1 O1 4IR doub 2 n n C1 N2 4IR sing 3 n n N1 C2 4IR sing 4 n n N1 HN1 4IR sing 5 n n S1 C3 4IR sing 6 n n S1 C5 4IR sing 7 n n C2 C3 4IR sing 8 n n C2 C4 4IR sing 9 n n C2 H2 4IR sing 10 n n N2 C4 4IR sing 11 n n N2 HN2 4IR sing 12 n n O2 C10 4IR doub 13 n n S2 O3 4IR doub 14 n n S2 N4 4IR sing 15 n n S2 O4 4IR doub 16 n n S2 C16 4IR sing 17 n n C3 H3 4IR sing 18 n n C3 H3A 4IR sing 19 n n N3 C10 4IR sing 20 n n N3 C11 4IR sing 21 n n N3 HN3 4IR sing 22 n n C4 C5 4IR sing 23 n n C4 H4 4IR sing 24 n n N4 C27 4IR sing 25 n n N4 HN4 4IR sing 26 n n C5 C6 4IR sing 27 n n C5 H5 4IR sing 28 n n N5 C28 4IR sing 29 n n N5 HN5 4IR sing 30 n n N5 HN5A 4IR sing 31 n n C6 C7 4IR sing 32 n n C6 H6 4IR sing 33 n n C6 H6A 4IR sing 34 n n C7 C8 4IR sing 35 n n C7 H7 4IR sing 36 n n C7 H7A 4IR sing 37 n n C8 C9 4IR sing 38 n n C8 H8 4IR sing 39 n n C8 H8A 4IR sing 40 n n C9 C10 4IR sing 41 n n C9 H9 4IR sing 42 n n C9 H9A 4IR sing 43 n n C11 C12 4IR doub 44 n y C11 C14 4IR sing 45 n y C12 C13 4IR sing 46 n y C12 H12 4IR sing 47 n n C13 C16 4IR doub 48 n y C13 H13 4IR sing 49 n n C14 C15 4IR doub 50 n y C14 H14 4IR sing 51 n n C15 C16 4IR sing 52 n y C15 H15 4IR sing 53 n n C17 C18 4IR sing 54 n n C17 C21 4IR doub 55 n n C17 C22 4IR sing 56 n n C18 C19 4IR sing 57 n n C18 C23 4IR sing 58 n n C18 H18 4IR sing 59 n n C19 C20 4IR sing 60 n n C19 C24 4IR sing 61 n n C19 H19 4IR sing 62 n n C20 C21 4IR sing 63 n n C20 C25 4IR sing 64 n n C20 H20 4IR sing 65 n n C21 C26 4IR sing 66 n n C22 H22 4IR sing 67 n n C22 H22A 4IR sing 68 n n C22 H22B 4IR sing 69 n n C23 H23 4IR sing 70 n n C23 H23A 4IR sing 71 n n C23 H23B 4IR sing 72 n n C24 H24 4IR sing 73 n n C24 H24A 4IR sing 74 n n C24 H24B 4IR sing 75 n n C25 H25 4IR sing 76 n n C25 H25A 4IR sing 77 n n C25 H25B 4IR sing 78 n n C26 H26 4IR sing 79 n n C26 H26A 4IR sing 80 n n C26 H26B 4IR sing 81 n n C27 C28 4IR sing 82 n n C27 H27 4IR sing 83 n n C27 H27A 4IR sing 84 n n C28 H28 4IR sing 85 n n C28 H28A 4IR sing 86 n n IR1 CL1 4IR sing 87 n n IR1 N4 4IR sing 88 n n IR1 N5 4IR sing 89 n n IR1 C21 4IR sing 90 n n IR1 C17 4IR sing 91 n n IR1 C18 4IR sing 92 n n IR1 C19 4IR sing 93 n n IR1 C20 4IR sing 94 n n # _atom_sites.entry_id 6GMI _atom_sites.fract_transf_matrix[1][1] 0.017389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4IR A 1 201 201 4IR 4IR . C 3 IR3 A 1 202 301 IR3 IR3 . D 3 IR3 A 1 203 302 IR3 IR3 . E 3 IR3 A 1 204 303 IR3 IR3 . F 3 IR3 A 1 205 304 IR3 IR3 . G 4 HOH A 1 301 36 HOH HOH . G 4 HOH A 2 302 50 HOH HOH . G 4 HOH A 3 303 32 HOH HOH . G 4 HOH A 4 304 49 HOH HOH . G 4 HOH A 5 305 8 HOH HOH . G 4 HOH A 6 306 46 HOH HOH . G 4 HOH A 7 307 13 HOH HOH . G 4 HOH A 8 308 34 HOH HOH . G 4 HOH A 9 309 51 HOH HOH . G 4 HOH A 10 310 4 HOH HOH . G 4 HOH A 11 311 10 HOH HOH . G 4 HOH A 12 312 14 HOH HOH . G 4 HOH A 13 313 11 HOH HOH . G 4 HOH A 14 314 1 HOH HOH . G 4 HOH A 15 315 40 HOH HOH . G 4 HOH A 16 316 5 HOH HOH . G 4 HOH A 17 317 12 HOH HOH . G 4 HOH A 18 318 16 HOH HOH . G 4 HOH A 19 319 42 HOH HOH . G 4 HOH A 20 320 21 HOH HOH . G 4 HOH A 21 321 3 HOH HOH . G 4 HOH A 22 322 19 HOH HOH . G 4 HOH A 23 323 17 HOH HOH . G 4 HOH A 24 324 6 HOH HOH . G 4 HOH A 25 325 48 HOH HOH . G 4 HOH A 26 326 18 HOH HOH . G 4 HOH A 27 327 2 HOH HOH . G 4 HOH A 28 328 30 HOH HOH . G 4 HOH A 29 329 38 HOH HOH . G 4 HOH A 30 330 7 HOH HOH . G 4 HOH A 31 331 47 HOH HOH . G 4 HOH A 32 332 45 HOH HOH . G 4 HOH A 33 333 39 HOH HOH . G 4 HOH A 34 334 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 4IR . . . B 2 29.145 28.512 -16.863 0.5 57 ? CL1 4IR 201 A 1 HETATM 2 IR IR1 4IR . . . B 2 29.081 26.135 -16.303 0.8 45.17 ? IR1 4IR 201 A 1 HETATM 3 C C1 4IR . . . B 2 15.403 29.307 -8.511 1 22.14 ? C1 4IR 201 A 1 HETATM 4 N N1 4IR . . . B 2 16.412 29.431 -7.518 1 23.64 ? N1 4IR 201 A 1 HETATM 5 O O1 4IR . . . B 2 14.104 29.367 -8.198 1 22.13 ? O1 4IR 201 A 1 HETATM 6 S S1 4IR . . . B 2 17.835 26.686 -8.588 1 22.88 ? S1 4IR 201 A 1 HETATM 7 C C2 4IR . . . B 2 17.699 29.33 -8.21 1 22.11 ? C2 4IR 201 A 1 HETATM 8 N N2 4IR . . . B 2 15.859 29.033 -9.776 1 22.72 ? N2 4IR 201 A 1 HETATM 9 O O2 4IR . . . B 2 19.661 25.974 -14.948 1 25.6 ? O2 4IR 201 A 1 HETATM 10 S S2 4IR . . . B 2 25.956 26.534 -16.019 1 48.97 ? S2 4IR 201 A 1 HETATM 11 C C3 4IR . . . B 2 18.403 28.079 -7.616 1 22.43 ? C3 4IR 201 A 1 HETATM 12 N N3 4IR . . . B 2 20.89 24.123 -14.128 1 25.86 ? N3 4IR 201 A 1 HETATM 13 O O3 4IR . . . B 2 26.002 26.01 -17.357 1 40.91 ? O3 4IR 201 A 1 HETATM 14 C C4 4IR . . . B 2 17.35 29.066 -9.7 1 22.06 ? C4 4IR 201 A 1 HETATM 15 N N4 4IR . . . B 2 27.229 26.052 -15.253 1 42.18 ? N4 4IR 201 A 1 HETATM 16 O O4 4IR . . . B 2 25.81 27.947 -15.725 1 47.43 ? O4 4IR 201 A 1 HETATM 17 C C5 4IR . . . B 2 17.894 27.696 -10.101 1 22.17 ? C5 4IR 201 A 1 HETATM 18 N N5 4IR . . . B 2 29.701 26.336 -14.286 1 47.13 ? N5 4IR 201 A 1 HETATM 19 C C6 4IR . . . B 2 17.273 27.065 -11.365 1 21.56 ? C6 4IR 201 A 1 HETATM 20 C C7 4IR . . . B 2 18.133 25.903 -11.894 1 20.98 ? C7 4IR 201 A 1 HETATM 21 C C8 4IR . . . B 2 17.512 25.308 -13.159 1 24.27 ? C8 4IR 201 A 1 HETATM 22 C C9 4IR . . . B 2 18.404 24.197 -13.73 1 24.7 ? C9 4IR 201 A 1 HETATM 23 C C10 4IR . . . B 2 19.696 24.77 -14.291 1 25.92 ? C10 4IR 201 A 1 HETATM 24 C C11 4IR . . . B 2 22.069 24.675 -14.607 1 27.87 ? C11 4IR 201 A 1 HETATM 25 C C12 4IR . . . B 2 22.385 25.958 -14.195 1 29.21 ? C12 4IR 201 A 1 HETATM 26 C C13 4IR . . . B 2 23.627 26.527 -14.675 1 36.61 ? C13 4IR 201 A 1 HETATM 27 C C14 4IR . . . B 2 22.986 23.898 -15.35 1 32.08 ? C14 4IR 201 A 1 HETATM 28 C C15 4IR . . . B 2 24.212 24.485 -15.813 1 35.13 ? C15 4IR 201 A 1 HETATM 29 C C16 4IR . . . B 2 24.527 25.799 -15.461 1 36.51 ? C16 4IR 201 A 1 HETATM 30 C C17 4IR . . . B 2 31.018 25.535 -17.014 0.8 47.84 ? C17 4IR 201 A 1 HETATM 31 C C18 4IR . . . B 2 30.202 24.333 -16.563 0.8 46.32 ? C18 4IR 201 A 1 HETATM 32 C C19 4IR . . . B 2 28.939 24.306 -17.397 0.8 46.83 ? C19 4IR 201 A 1 HETATM 33 C C20 4IR . . . B 2 28.984 25.489 -18.347 0.8 51.7 ? C20 4IR 201 A 1 HETATM 34 C C21 4IR . . . B 2 30.275 26.234 -18.1 0.8 49.08 ? C21 4IR 201 A 1 HETATM 35 C C22 4IR . . . B 2 32.347 25.955 -16.4 0.8 52.74 ? C22 4IR 201 A 1 HETATM 36 C C23 4IR . . . B 2 30.582 23.356 -15.429 0.8 46.68 ? C23 4IR 201 A 1 HETATM 37 C C24 4IR . . . B 2 27.733 23.368 -17.368 0.8 47.61 ? C24 4IR 201 A 1 HETATM 38 C C25 4IR . . . B 2 27.898 25.89 -19.364 0.8 51.25 ? C25 4IR 201 A 1 HETATM 39 C C26 4IR . . . B 2 30.817 27.515 -18.745 0.8 55.39 ? C26 4IR 201 A 1 HETATM 40 C C27 4IR . . . B 2 27.271 26.591 -13.882 1 46.21 ? C27 4IR 201 A 1 HETATM 41 C C28 4IR . . . B 2 28.67 27.033 -13.493 1 50.59 ? C28 4IR 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #