data_6GND
#
_model_server_result.job_id            8GXqLWdp8CjHF-Hpy3Mk3g 
_model_server_result.datetime_utc      '2024-12-12 16:50:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gnd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":302}' 
#
_entry.id    6GND 
#
_exptl.entry_id    6GND 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.8 
_cell.angle_gamma         90 
_cell.entry_id            6GND 
_cell.length_a            115.23 
_cell.length_b            174.35 
_cell.length_c            114.304 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GND 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,M,N,O,P,T,U 1 1 
C,D,J,K,Q 2 1 
E,F,L,R,S 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_545 x+1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 57.615 -87.175 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 137 A CYS 134 1_555 B SG CYS 33 B CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
disulf ? disulf2 C SG CYS 137 C CYS 134 1_555 D SG CYS 33 D CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
disulf ? disulf3 E SG CYS 137 E CYS 134 1_555 F SG CYS 33 F CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 E NE2 GLN 265 E GLN 262 1_555 L O2 FAD . E FAD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.286 ? 
covale ? covale2 G NE2 GLN 265 G GLN 262 1_555 M O2 FAD . G FAD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6GND 
_atom_sites.fract_transf_matrix[1][1]    0.008678 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004969 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005736 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010081 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 FAD A 1 300 300 FAD FAD . 
J 3 FAD C 1 301 300 FAD FAD . 
K 4 EDO C 1 302 401 EDO EDO . 
L 3 FAD E 1 300 300 FAD FAD . 
M 3 FAD G 1 301 300 FAD FAD . 
N 4 EDO G 1 302 401 EDO EDO . 
O 5 HOH A 1 401 29 HOH HOH . 
O 5 HOH A 2 402 73 HOH HOH . 
O 5 HOH A 3 403 59 HOH HOH . 
O 5 HOH A 4 404 56 HOH HOH . 
O 5 HOH A 5 405 54 HOH HOH . 
O 5 HOH A 6 406 55 HOH HOH . 
O 5 HOH A 7 407 8 HOH HOH . 
O 5 HOH A 8 408 7 HOH HOH . 
P 5 HOH B 1 201 60 HOH HOH . 
P 5 HOH B 2 202 21 HOH HOH . 
P 5 HOH B 3 203 74 HOH HOH . 
P 5 HOH B 4 204 61 HOH HOH . 
Q 5 HOH C 1 401 15 HOH HOH . 
Q 5 HOH C 2 402 10 HOH HOH . 
Q 5 HOH C 3 403 58 HOH HOH . 
Q 5 HOH C 4 404 3 HOH HOH . 
Q 5 HOH C 5 405 11 HOH HOH . 
Q 5 HOH C 6 406 57 HOH HOH . 
Q 5 HOH C 7 407 25 HOH HOH . 
Q 5 HOH C 8 408 22 HOH HOH . 
Q 5 HOH C 9 409 27 HOH HOH . 
Q 5 HOH C 10 410 34 HOH HOH . 
Q 5 HOH C 11 411 13 HOH HOH . 
Q 5 HOH C 12 412 24 HOH HOH . 
Q 5 HOH C 13 413 66 HOH HOH . 
Q 5 HOH C 14 414 14 HOH HOH . 
Q 5 HOH C 15 415 30 HOH HOH . 
Q 5 HOH C 16 416 17 HOH HOH . 
Q 5 HOH C 17 417 12 HOH HOH . 
Q 5 HOH C 18 418 33 HOH HOH . 
Q 5 HOH C 19 419 28 HOH HOH . 
Q 5 HOH C 20 420 23 HOH HOH . 
Q 5 HOH C 21 421 16 HOH HOH . 
Q 5 HOH C 22 422 31 HOH HOH . 
Q 5 HOH C 23 423 62 HOH HOH . 
Q 5 HOH C 24 424 63 HOH HOH . 
Q 5 HOH C 25 425 65 HOH HOH . 
Q 5 HOH C 26 426 26 HOH HOH . 
Q 5 HOH C 27 427 32 HOH HOH . 
R 5 HOH E 1 401 4 HOH HOH . 
R 5 HOH E 2 402 44 HOH HOH . 
R 5 HOH E 3 403 39 HOH HOH . 
R 5 HOH E 4 404 35 HOH HOH . 
R 5 HOH E 5 405 68 HOH HOH . 
R 5 HOH E 6 406 67 HOH HOH . 
R 5 HOH E 7 407 37 HOH HOH . 
R 5 HOH E 8 408 69 HOH HOH . 
R 5 HOH E 9 409 43 HOH HOH . 
S 5 HOH F 1 201 5 HOH HOH . 
S 5 HOH F 2 202 42 HOH HOH . 
T 5 HOH G 1 401 49 HOH HOH . 
T 5 HOH G 2 402 71 HOH HOH . 
T 5 HOH G 3 403 46 HOH HOH . 
T 5 HOH G 4 404 18 HOH HOH . 
T 5 HOH G 5 405 19 HOH HOH . 
T 5 HOH G 6 406 72 HOH HOH . 
T 5 HOH G 7 407 20 HOH HOH . 
T 5 HOH G 8 408 47 HOH HOH . 
T 5 HOH G 9 409 48 HOH HOH . 
T 5 HOH G 10 410 45 HOH HOH . 
T 5 HOH G 11 411 70 HOH HOH . 
T 5 HOH G 12 412 38 HOH HOH . 
U 5 HOH H 1 201 51 HOH HOH . 
U 5 HOH H 2 202 52 HOH HOH . 
U 5 HOH H 3 203 50 HOH HOH . 
U 5 HOH H 4 204 75 HOH HOH . 
U 5 HOH H 5 205 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . K 4 137.462 10.618 22.164 1 70.05 ? C1 EDO 302 C 1 
HETATM 2 O O1 EDO . . . K 4 138.199 10.308 23.315 1 69.74 ? O1 EDO 302 C 1 
HETATM 3 C C2 EDO . . . K 4 138.404 11.074 21.05 1 69.11 ? C2 EDO 302 C 1 
HETATM 4 O O2 EDO . . . K 4 139.342 10.07 20.778 1 67.76 ? O2 EDO 302 C 1 
HETATM 5 H H11 EDO . . . K 4 136.976 9.831 21.871 1 85.29 ? H11 EDO 302 C 1 
HETATM 6 H H12 EDO . . . K 4 136.834 11.329 22.365 1 85.29 ? H12 EDO 302 C 1 
HETATM 7 H HO1 EDO . . . K 4 137.675 10.012 23.916 1 84.91 ? HO1 EDO 302 C 1 
HETATM 8 H H21 EDO . . . K 4 137.889 11.259 20.249 1 84.17 ? H21 EDO 302 C 1 
HETATM 9 H H22 EDO . . . K 4 138.866 11.88 21.33 1 84.17 ? H22 EDO 302 C 1 
HETATM 10 H HO2 EDO . . . K 4 139.88 10.34 20.177 1 82.54 ? HO2 EDO 302 C 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           187 
_model_server_stats.create_model_time_ms    155 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#