data_6GNJ
#
_model_server_result.job_id            RdMKwviS8_RnZX7F3Vo6hQ 
_model_server_result.datetime_utc      '2024-12-25 07:17:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gnj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    6GNJ 
#
_exptl.entry_id    6GNJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              264.3 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-(12-oxidanylidene-7-thia-9,11-diazatricyclo[6.4.0.0^{2,6}]dodeca-1(8),2(6),9-trien-10-yl)propanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          125.84 
_cell.angle_gamma         90 
_cell.entry_id            6GNJ 
_cell.length_a            160.398 
_cell.length_b            59.357 
_cell.length_c            120.641 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GNJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H12 N2 O3 S' 
_chem_comp.formula_weight    264.3 
_chem_comp.id                F4W 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-(12-oxidanylidene-7-thia-9,11-diazatricyclo[6.4.0.0^{2,6}]dodeca-1(8),2(6),9-trien-10-yl)propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAH CAQ F4W doub 83 n n 
CAQ OAR F4W sing 84 n n 
CAQ CAP F4W sing 85 n n 
CAP CAO F4W sing 86 n n 
CAO CAN F4W sing 87 n n 
CAN NAM F4W doub 88 n n 
CAN NAG F4W sing 89 n n 
NAM CAL F4W sing 90 n n 
CAL SAK F4W sing 91 n y 
CAL CAE F4W doub 92 n y 
SAK CAJ F4W sing 93 n y 
CAJ CAI F4W sing 94 n n 
CAJ CAD F4W doub 95 n y 
CAI CAB F4W sing 96 n n 
CAB CAC F4W sing 97 n n 
CAC CAD F4W sing 98 n n 
CAD CAE F4W sing 99 n y 
CAE CAF F4W sing 100 n n 
CAF OAA F4W doub 101 n n 
CAF NAG F4W sing 102 n n 
OAR H1 F4W sing 103 n n 
CAP H2 F4W sing 104 n n 
CAP H3 F4W sing 105 n n 
CAO H4 F4W sing 106 n n 
CAO H5 F4W sing 107 n n 
CAI H7 F4W sing 108 n n 
CAI H8 F4W sing 109 n n 
CAB H9 F4W sing 110 n n 
CAB H10 F4W sing 111 n n 
CAC H11 F4W sing 112 n n 
CAC H12 F4W sing 113 n n 
NAG H6 F4W sing 114 n n 
#
_atom_sites.entry_id                     6GNJ 
_atom_sites.fract_transf_matrix[1][1]    0.006234 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004503 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016847 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010225 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           F4W 
_pdbx_nonpoly_scheme.pdb_strand_id    C 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      501 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       F4W 
_pdbx_nonpoly_scheme.auth_mon_id      S01 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAH F4W . . . D 3 110.157 8.48 7.645 1 119.67 ? OAH F4W 501 C 1 
HETATM 2 C CAQ F4W . . . D 3 109.878 9.248 6.651 1 117.43 ? CAQ F4W 501 C 1 
HETATM 3 O OAR F4W . . . D 3 108.71 9.439 6.174 1 117.15 ? OAR F4W 501 C 1 
HETATM 4 C CAP F4W . . . D 3 111.047 10.07 6.02 1 113.81 ? CAP F4W 501 C 1 
HETATM 5 C CAO F4W . . . D 3 111.778 9.55 4.75 1 110.87 ? CAO F4W 501 C 1 
HETATM 6 C CAN F4W . . . D 3 112.67 8.526 5.074 1 108.86 ? CAN F4W 501 C 1 
HETATM 7 N NAM F4W . . . D 3 112.202 7.301 5.501 1 107.31 ? NAM F4W 501 C 1 
HETATM 8 C CAL F4W . . . D 3 113.053 6.288 5.817 1 103.86 ? CAL F4W 501 C 1 
HETATM 9 S SAK F4W . . . D 3 112.733 4.914 6.3 1 101.49 ? SAK F4W 501 C 1 
HETATM 10 C CAJ F4W . . . D 3 114.091 4.311 6.443 1 99.94 ? CAJ F4W 501 C 1 
HETATM 11 C CAI F4W . . . D 3 114.744 3.132 6.832 1 96.43 ? CAI F4W 501 C 1 
HETATM 12 C CAB F4W . . . D 3 116.103 3.546 7.247 1 94.34 ? CAB F4W 501 C 1 
HETATM 13 C CAC F4W . . . D 3 116.287 4.618 6.239 1 96.69 ? CAC F4W 501 C 1 
HETATM 14 C CAD F4W . . . D 3 115.025 5.237 6.088 1 100.19 ? CAD F4W 501 C 1 
HETATM 15 C CAE F4W . . . D 3 114.431 6.429 5.715 1 102.32 ? CAE F4W 501 C 1 
HETATM 16 C CAF F4W . . . D 3 114.95 7.658 5.287 1 102.05 ? CAF F4W 501 C 1 
HETATM 17 O OAA F4W . . . D 3 116.158 7.896 5.158 1 98.73 ? OAA F4W 501 C 1 
HETATM 18 N NAG F4W . . . D 3 114.074 8.723 4.954 1 106 ? NAG F4W 501 C 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           18 
#