data_6GNK
#
_model_server_result.job_id            qDmnHPEw0NIB48iSPSw63w 
_model_server_result.datetime_utc      '2025-02-05 11:47:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gnk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    6GNK 
#
_exptl.entry_id    6GNK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              662.46 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          126.45 
_cell.angle_gamma         90 
_cell.entry_id            6GNK 
_cell.length_a            160.92 
_cell.length_b            56.77 
_cell.length_c            120.35 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GNK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H30 N7 O13 P2 1' 
_chem_comp.formula_weight    662.46 
_chem_comp.id                CNA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3B C3B CNA sing 70 n n 
O2B C2B CNA sing 71 n n 
C3B C2B CNA sing 72 n n 
C3B C4B CNA sing 73 n n 
C2B C1B CNA sing 74 n n 
N3A C2A CNA doub 75 n y 
N3A C4A CNA sing 76 n y 
C2A N1A CNA sing 77 n y 
C1B N9A CNA sing 78 n n 
C1B O4B CNA sing 79 n n 
C4B O4B CNA sing 80 n n 
C4B C5B CNA sing 81 n n 
C4A N9A CNA sing 82 n y 
C4A C5A CNA doub 83 n y 
N9A C8A CNA sing 84 n y 
N1A C6A CNA doub 85 n y 
O2A PA CNA doub 86 n n 
O5B C5B CNA sing 87 n n 
O5B PA CNA sing 88 n n 
C5A C6A CNA sing 89 n y 
C5A N7A CNA sing 90 n y 
C6A N6A CNA sing 91 n n 
C8A N7A CNA doub 92 n y 
PA O3 CNA sing 93 n n 
PA O1A CNA sing 94 n n 
O3 PN CNA sing 95 n n 
O1N PN CNA doub 96 n n 
PN O2N CNA sing 97 n n 
PN O5D CNA sing 98 n n 
C5D O5D CNA sing 99 n n 
C5D C4D CNA sing 100 n n 
C3D O3D CNA sing 101 n n 
C3D C4D CNA sing 102 n n 
C3D C2D CNA sing 103 n n 
C4D C4' CNA sing 104 n n 
O2D C2D CNA sing 105 n n 
C2D C1D CNA sing 106 n n 
C4' C1D CNA sing 107 n n 
C1D N1N CNA sing 108 n n 
N1N C6N CNA doub 109 n y 
N1N C2N CNA sing 110 n y 
C6N C5N CNA sing 111 n y 
C2N C3N CNA doub 112 n y 
C5N C4N CNA doub 113 n y 
C3N C4N CNA sing 114 n y 
C3N C7N CNA sing 115 n n 
N7N C7N CNA sing 116 n n 
C7N O7N CNA doub 117 n n 
O1A H1 CNA sing 118 n n 
C5B H2 CNA sing 119 n n 
C5B H3 CNA sing 120 n n 
C4B H4 CNA sing 121 n n 
C3B H5 CNA sing 122 n n 
O3B H6 CNA sing 123 n n 
C2B H7 CNA sing 124 n n 
O2B H8 CNA sing 125 n n 
C1B H9 CNA sing 126 n n 
C8A H10 CNA sing 127 n n 
N6A H11 CNA sing 128 n n 
N6A H12 CNA sing 129 n n 
C2A H13 CNA sing 130 n n 
O2N H14 CNA sing 131 n n 
C5D H15 CNA sing 132 n n 
C5D H16 CNA sing 133 n n 
C4D H17 CNA sing 134 n n 
C4' H18 CNA sing 135 n n 
C4' H19 CNA sing 136 n n 
C3D H20 CNA sing 137 n n 
O3D H21 CNA sing 138 n n 
C2D H22 CNA sing 139 n n 
O2D H23 CNA sing 140 n n 
C1D H24 CNA sing 141 n n 
C2N H25 CNA sing 142 n n 
N7N H26 CNA sing 143 n n 
N7N H27 CNA sing 144 n n 
C4N H28 CNA sing 145 n n 
C5N H29 CNA sing 146 n n 
C6N H30 CNA sing 147 n n 
#
_atom_sites.entry_id                     6GNK 
_atom_sites.fract_transf_matrix[1][1]    0.006214 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00459 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017615 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 CNA C 1 501 1 CNA CNA . 
E 4 MPD C 1 502 202 MPD MPD . 
F 5 HOH A 1 301 9 HOH HOH . 
F 5 HOH A 2 302 7 HOH HOH . 
F 5 HOH A 3 303 26 HOH HOH . 
F 5 HOH A 4 304 18 HOH HOH . 
F 5 HOH A 5 305 12 HOH HOH . 
F 5 HOH A 6 306 10 HOH HOH . 
F 5 HOH A 7 307 11 HOH HOH . 
F 5 HOH A 8 308 24 HOH HOH . 
F 5 HOH A 9 309 25 HOH HOH . 
F 5 HOH A 10 310 6 HOH HOH . 
F 5 HOH A 11 311 16 HOH HOH . 
F 5 HOH A 12 312 23 HOH HOH . 
G 5 HOH C 1 601 5 HOH HOH . 
G 5 HOH C 2 602 2 HOH HOH . 
G 5 HOH C 3 603 3 HOH HOH . 
G 5 HOH C 4 604 1 HOH HOH . 
G 5 HOH C 5 605 13 HOH HOH . 
G 5 HOH C 6 606 19 HOH HOH . 
G 5 HOH C 7 607 4 HOH HOH . 
G 5 HOH C 8 608 17 HOH HOH . 
G 5 HOH C 9 609 15 HOH HOH . 
G 5 HOH C 10 610 8 HOH HOH . 
G 5 HOH C 11 611 14 HOH HOH . 
G 5 HOH C 12 612 21 HOH HOH . 
G 5 HOH C 13 613 22 HOH HOH . 
G 5 HOH C 14 614 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA CNA . . . D 3 110.46 8.253 6.051 1 64.81 ? PA CNA 501 C 1 
HETATM 2 O O1A CNA . . . D 3 111.134 8.808 7.308 1 62.18 ? O1A CNA 501 C 1 
HETATM 3 O O2A CNA . . . D 3 109.051 8.354 6.377 1 70.35 ? O2A CNA 501 C 1 
HETATM 4 O O5B CNA . . . D 3 110.88 8.913 4.674 1 65.39 ? O5B CNA 501 C 1 
HETATM 5 C C5B CNA . . . D 3 110.25 8.905 3.381 1 68.07 ? C5B CNA 501 C 1 
HETATM 6 C C4B CNA . . . D 3 110.641 10.208 2.622 1 70.45 ? C4B CNA 501 C 1 
HETATM 7 O O4B CNA . . . D 3 109.905 11.29 3.146 1 71.55 ? O4B CNA 501 C 1 
HETATM 8 C C3B CNA . . . D 3 112.098 10.666 2.855 1 70.16 ? C3B CNA 501 C 1 
HETATM 9 O O3B CNA . . . D 3 112.893 10.117 1.901 1 69.43 ? O3B CNA 501 C 1 
HETATM 10 C C2B CNA . . . D 3 111.959 12.155 2.628 1 71.06 ? C2B CNA 501 C 1 
HETATM 11 O O2B CNA . . . D 3 111.739 12.506 1.351 1 71.27 ? O2B CNA 501 C 1 
HETATM 12 C C1B CNA . . . D 3 110.686 12.458 3.348 1 71.23 ? C1B CNA 501 C 1 
HETATM 13 N N9A CNA . . . D 3 110.822 12.898 4.795 1 70.89 ? N9A CNA 501 C 1 
HETATM 14 C C8A CNA . . . D 3 111.416 12.251 5.784 1 71.68 ? C8A CNA 501 C 1 
HETATM 15 N N7A CNA . . . D 3 111.31 12.896 6.922 1 71.39 ? N7A CNA 501 C 1 
HETATM 16 C C5A CNA . . . D 3 110.673 14.019 6.669 1 71.26 ? C5A CNA 501 C 1 
HETATM 17 C C6A CNA . . . D 3 110.324 15.078 7.493 1 70.62 ? C6A CNA 501 C 1 
HETATM 18 N N6A CNA . . . D 3 110.634 15.019 8.84 1 67.96 ? N6A CNA 501 C 1 
HETATM 19 N N1A CNA . . . D 3 109.685 16.149 6.93 1 68.95 ? N1A CNA 501 C 1 
HETATM 20 C C2A CNA . . . D 3 109.323 16.274 5.495 1 68.96 ? C2A CNA 501 C 1 
HETATM 21 N N3A CNA . . . D 3 109.703 15.076 4.724 1 70.4 ? N3A CNA 501 C 1 
HETATM 22 C C4A CNA . . . D 3 110.366 14.035 5.324 1 71.11 ? C4A CNA 501 C 1 
HETATM 23 O O3 CNA . . . D 3 110.909 6.737 5.932 1 68.57 ? O3 CNA 501 C 1 
HETATM 24 P PN CNA . . . D 3 112.146 5.868 5.446 1 69.53 ? PN CNA 501 C 1 
HETATM 25 O O1N CNA . . . D 3 112.245 5.864 3.897 1 65.67 ? O1N CNA 501 C 1 
HETATM 26 O O2N CNA . . . D 3 113.426 6.172 6.122 1 67.36 ? O2N CNA 501 C 1 
HETATM 27 O O5D CNA . . . D 3 111.764 4.433 6.079 1 67.22 ? O5D CNA 501 C 1 
HETATM 28 C C5D CNA . . . D 3 110.931 3.539 5.413 1 66.17 ? C5D CNA 501 C 1 
HETATM 29 C C4D CNA . . . D 3 111.36 2.024 5.378 1 64.52 ? C4D CNA 501 C 1 
HETATM 30 C C4' CNA . . . D 3 112.782 1.837 5.129 1 58.07 ? C4' CNA 501 C 1 
HETATM 31 C C3D CNA . . . D 3 111.079 1.24 6.628 1 64.8 ? C3D CNA 501 C 1 
HETATM 32 O O3D CNA . . . D 3 110.978 -0.109 6.045 1 67.03 ? O3D CNA 501 C 1 
HETATM 33 C C2D CNA . . . D 3 112.326 1.448 7.421 1 65.2 ? C2D CNA 501 C 1 
HETATM 34 O O2D CNA . . . D 3 112.561 0.303 8.294 1 67.83 ? O2D CNA 501 C 1 
HETATM 35 C C1D CNA . . . D 3 113.356 1.434 6.386 1 61.37 ? C1D CNA 501 C 1 
HETATM 36 N N1N CNA . . . D 3 114.694 2.038 6.492 1 66.91 ? N1N CNA 501 C 1 
HETATM 37 C C2N CNA . . . D 3 115.014 3.353 5.993 1 66.94 ? C2N CNA 501 C 1 
HETATM 38 C C3N CNA . . . D 3 116.297 3.852 5.98 1 68.56 ? C3N CNA 501 C 1 
HETATM 39 C C7N CNA . . . D 3 116.728 5.134 5.454 1 68.06 ? C7N CNA 501 C 1 
HETATM 40 O O7N CNA . . . D 3 117.86 5.403 5.423 1 71.03 ? O7N CNA 501 C 1 
HETATM 41 N N7N CNA . . . D 3 115.967 6.059 4.964 1 65.98 ? N7N CNA 501 C 1 
HETATM 42 C C4N CNA . . . D 3 117.257 2.968 6.552 1 71.74 ? C4N CNA 501 C 1 
HETATM 43 C C5N CNA . . . D 3 116.962 1.732 7.132 1 71.62 ? C5N CNA 501 C 1 
HETATM 44 C C6N CNA . . . D 3 115.67 1.241 7.07 1 69.25 ? C6N CNA 501 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#