data_6GNT # _model_server_result.job_id 03URuuVgwny1WmavzZbKog _model_server_result.datetime_utc '2024-11-08 21:12:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gnt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 6GNT # _exptl.entry_id 6GNT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.85 _cell.angle_gamma 90 _cell.entry_id 6GNT _cell.length_a 48.757 _cell.length_b 90.843 _cell.length_c 53.677 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GNT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 207 n n C1 C2 GOL sing 208 n n C1 H11 GOL sing 209 n n C1 H12 GOL sing 210 n n O1 HO1 GOL sing 211 n n C2 O2 GOL sing 212 n n C2 C3 GOL sing 213 n n C2 H2 GOL sing 214 n n O2 HO2 GOL sing 215 n n C3 O3 GOL sing 216 n n C3 H31 GOL sing 217 n n C3 H32 GOL sing 218 n n O3 HO3 GOL sing 219 n n # _atom_sites.entry_id 6GNT _atom_sites.fract_transf_matrix[1][1] 0.02051 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009496 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYA A 1 1001 1001 MYA MYA . C 3 GOL A 1 1002 1 GOL GOL . D 4 F5Q A 1 1003 1 F5Q DRG . E 5 HOH A 1 1101 173 HOH HOH . E 5 HOH A 2 1102 33 HOH HOH . E 5 HOH A 3 1103 206 HOH HOH . E 5 HOH A 4 1104 194 HOH HOH . E 5 HOH A 5 1105 231 HOH HOH . E 5 HOH A 6 1106 253 HOH HOH . E 5 HOH A 7 1107 267 HOH HOH . E 5 HOH A 8 1108 179 HOH HOH . E 5 HOH A 9 1109 145 HOH HOH . E 5 HOH A 10 1110 259 HOH HOH . E 5 HOH A 11 1111 156 HOH HOH . E 5 HOH A 12 1112 299 HOH HOH . E 5 HOH A 13 1113 111 HOH HOH . E 5 HOH A 14 1114 269 HOH HOH . E 5 HOH A 15 1115 176 HOH HOH . E 5 HOH A 16 1116 268 HOH HOH . E 5 HOH A 17 1117 302 HOH HOH . E 5 HOH A 18 1118 236 HOH HOH . E 5 HOH A 19 1119 264 HOH HOH . E 5 HOH A 20 1120 224 HOH HOH . E 5 HOH A 21 1121 212 HOH HOH . E 5 HOH A 22 1122 223 HOH HOH . E 5 HOH A 23 1123 188 HOH HOH . E 5 HOH A 24 1124 40 HOH HOH . E 5 HOH A 25 1125 281 HOH HOH . E 5 HOH A 26 1126 270 HOH HOH . E 5 HOH A 27 1127 255 HOH HOH . E 5 HOH A 28 1128 225 HOH HOH . E 5 HOH A 29 1129 276 HOH HOH . E 5 HOH A 30 1130 77 HOH HOH . E 5 HOH A 31 1131 218 HOH HOH . E 5 HOH A 32 1132 98 HOH HOH . E 5 HOH A 33 1133 63 HOH HOH . E 5 HOH A 34 1134 265 HOH HOH . E 5 HOH A 35 1135 84 HOH HOH . E 5 HOH A 36 1136 100 HOH HOH . E 5 HOH A 37 1137 172 HOH HOH . E 5 HOH A 38 1138 233 HOH HOH . E 5 HOH A 39 1139 148 HOH HOH . E 5 HOH A 40 1140 191 HOH HOH . E 5 HOH A 41 1141 30 HOH HOH . E 5 HOH A 42 1142 237 HOH HOH . E 5 HOH A 43 1143 65 HOH HOH . E 5 HOH A 44 1144 147 HOH HOH . E 5 HOH A 45 1145 217 HOH HOH . E 5 HOH A 46 1146 273 HOH HOH . E 5 HOH A 47 1147 132 HOH HOH . E 5 HOH A 48 1148 289 HOH HOH . E 5 HOH A 49 1149 164 HOH HOH . E 5 HOH A 50 1150 292 HOH HOH . E 5 HOH A 51 1151 114 HOH HOH . E 5 HOH A 52 1152 123 HOH HOH . E 5 HOH A 53 1153 12 HOH HOH . E 5 HOH A 54 1154 102 HOH HOH . E 5 HOH A 55 1155 43 HOH HOH . E 5 HOH A 56 1156 153 HOH HOH . E 5 HOH A 57 1157 97 HOH HOH . E 5 HOH A 58 1158 15 HOH HOH . E 5 HOH A 59 1159 34 HOH HOH . E 5 HOH A 60 1160 10 HOH HOH . E 5 HOH A 61 1161 301 HOH HOH . E 5 HOH A 62 1162 93 HOH HOH . E 5 HOH A 63 1163 89 HOH HOH . E 5 HOH A 64 1164 128 HOH HOH . E 5 HOH A 65 1165 286 HOH HOH . E 5 HOH A 66 1166 221 HOH HOH . E 5 HOH A 67 1167 230 HOH HOH . E 5 HOH A 68 1168 133 HOH HOH . E 5 HOH A 69 1169 203 HOH HOH . E 5 HOH A 70 1170 216 HOH HOH . E 5 HOH A 71 1171 91 HOH HOH . E 5 HOH A 72 1172 195 HOH HOH . E 5 HOH A 73 1173 220 HOH HOH . E 5 HOH A 74 1174 109 HOH HOH . E 5 HOH A 75 1175 120 HOH HOH . E 5 HOH A 76 1176 143 HOH HOH . E 5 HOH A 77 1177 181 HOH HOH . E 5 HOH A 78 1178 28 HOH HOH . E 5 HOH A 79 1179 54 HOH HOH . E 5 HOH A 80 1180 19 HOH HOH . E 5 HOH A 81 1181 119 HOH HOH . E 5 HOH A 82 1182 227 HOH HOH . E 5 HOH A 83 1183 256 HOH HOH . E 5 HOH A 84 1184 185 HOH HOH . E 5 HOH A 85 1185 258 HOH HOH . E 5 HOH A 86 1186 9 HOH HOH . E 5 HOH A 87 1187 39 HOH HOH . E 5 HOH A 88 1188 174 HOH HOH . E 5 HOH A 89 1189 88 HOH HOH . E 5 HOH A 90 1190 20 HOH HOH . E 5 HOH A 91 1191 190 HOH HOH . E 5 HOH A 92 1192 24 HOH HOH . E 5 HOH A 93 1193 48 HOH HOH . E 5 HOH A 94 1194 116 HOH HOH . E 5 HOH A 95 1195 73 HOH HOH . E 5 HOH A 96 1196 254 HOH HOH . E 5 HOH A 97 1197 282 HOH HOH . E 5 HOH A 98 1198 163 HOH HOH . E 5 HOH A 99 1199 107 HOH HOH . E 5 HOH A 100 1200 245 HOH HOH . E 5 HOH A 101 1201 108 HOH HOH . E 5 HOH A 102 1202 110 HOH HOH . E 5 HOH A 103 1203 131 HOH HOH . E 5 HOH A 104 1204 83 HOH HOH . E 5 HOH A 105 1205 226 HOH HOH . E 5 HOH A 106 1206 31 HOH HOH . E 5 HOH A 107 1207 170 HOH HOH . E 5 HOH A 108 1208 136 HOH HOH . E 5 HOH A 109 1209 22 HOH HOH . E 5 HOH A 110 1210 42 HOH HOH . E 5 HOH A 111 1211 85 HOH HOH . E 5 HOH A 112 1212 272 HOH HOH . E 5 HOH A 113 1213 50 HOH HOH . E 5 HOH A 114 1214 166 HOH HOH . E 5 HOH A 115 1215 56 HOH HOH . E 5 HOH A 116 1216 234 HOH HOH . E 5 HOH A 117 1217 58 HOH HOH . E 5 HOH A 118 1218 99 HOH HOH . E 5 HOH A 119 1219 104 HOH HOH . E 5 HOH A 120 1220 266 HOH HOH . E 5 HOH A 121 1221 139 HOH HOH . E 5 HOH A 122 1222 214 HOH HOH . E 5 HOH A 123 1223 278 HOH HOH . E 5 HOH A 124 1224 251 HOH HOH . E 5 HOH A 125 1225 175 HOH HOH . E 5 HOH A 126 1226 18 HOH HOH . E 5 HOH A 127 1227 80 HOH HOH . E 5 HOH A 128 1228 41 HOH HOH . E 5 HOH A 129 1229 11 HOH HOH . E 5 HOH A 130 1230 14 HOH HOH . E 5 HOH A 131 1231 49 HOH HOH . E 5 HOH A 132 1232 125 HOH HOH . E 5 HOH A 133 1233 137 HOH HOH . E 5 HOH A 134 1234 161 HOH HOH . E 5 HOH A 135 1235 78 HOH HOH . E 5 HOH A 136 1236 149 HOH HOH . E 5 HOH A 137 1237 57 HOH HOH . E 5 HOH A 138 1238 70 HOH HOH . E 5 HOH A 139 1239 46 HOH HOH . E 5 HOH A 140 1240 52 HOH HOH . E 5 HOH A 141 1241 27 HOH HOH . E 5 HOH A 142 1242 162 HOH HOH . E 5 HOH A 143 1243 117 HOH HOH . E 5 HOH A 144 1244 252 HOH HOH . E 5 HOH A 145 1245 16 HOH HOH . E 5 HOH A 146 1246 62 HOH HOH . E 5 HOH A 147 1247 38 HOH HOH . E 5 HOH A 148 1248 32 HOH HOH . E 5 HOH A 149 1249 29 HOH HOH . E 5 HOH A 150 1250 66 HOH HOH . E 5 HOH A 151 1251 21 HOH HOH . E 5 HOH A 152 1252 200 HOH HOH . E 5 HOH A 153 1253 146 HOH HOH . E 5 HOH A 154 1254 199 HOH HOH . E 5 HOH A 155 1255 130 HOH HOH . E 5 HOH A 156 1256 68 HOH HOH . E 5 HOH A 157 1257 17 HOH HOH . E 5 HOH A 158 1258 72 HOH HOH . E 5 HOH A 159 1259 86 HOH HOH . E 5 HOH A 160 1260 81 HOH HOH . E 5 HOH A 161 1261 3 HOH HOH . E 5 HOH A 162 1262 126 HOH HOH . E 5 HOH A 163 1263 138 HOH HOH . E 5 HOH A 164 1264 26 HOH HOH . E 5 HOH A 165 1265 140 HOH HOH . E 5 HOH A 166 1266 197 HOH HOH . E 5 HOH A 167 1267 96 HOH HOH . E 5 HOH A 168 1268 76 HOH HOH . E 5 HOH A 169 1269 189 HOH HOH . E 5 HOH A 170 1270 169 HOH HOH . E 5 HOH A 171 1271 262 HOH HOH . E 5 HOH A 172 1272 44 HOH HOH . E 5 HOH A 173 1273 129 HOH HOH . E 5 HOH A 174 1274 279 HOH HOH . E 5 HOH A 175 1275 75 HOH HOH . E 5 HOH A 176 1276 35 HOH HOH . E 5 HOH A 177 1277 210 HOH HOH . E 5 HOH A 178 1278 127 HOH HOH . E 5 HOH A 179 1279 36 HOH HOH . E 5 HOH A 180 1280 167 HOH HOH . E 5 HOH A 181 1281 160 HOH HOH . E 5 HOH A 182 1282 135 HOH HOH . E 5 HOH A 183 1283 152 HOH HOH . E 5 HOH A 184 1284 112 HOH HOH . E 5 HOH A 185 1285 74 HOH HOH . E 5 HOH A 186 1286 5 HOH HOH . E 5 HOH A 187 1287 67 HOH HOH . E 5 HOH A 188 1288 51 HOH HOH . E 5 HOH A 189 1289 59 HOH HOH . E 5 HOH A 190 1290 193 HOH HOH . E 5 HOH A 191 1291 261 HOH HOH . E 5 HOH A 192 1292 105 HOH HOH . E 5 HOH A 193 1293 144 HOH HOH . E 5 HOH A 194 1294 8 HOH HOH . E 5 HOH A 195 1295 92 HOH HOH . E 5 HOH A 196 1296 239 HOH HOH . E 5 HOH A 197 1297 177 HOH HOH . E 5 HOH A 198 1298 246 HOH HOH . E 5 HOH A 199 1299 6 HOH HOH . E 5 HOH A 200 1300 291 HOH HOH . E 5 HOH A 201 1301 208 HOH HOH . E 5 HOH A 202 1302 71 HOH HOH . E 5 HOH A 203 1303 168 HOH HOH . E 5 HOH A 204 1304 142 HOH HOH . E 5 HOH A 205 1305 205 HOH HOH . E 5 HOH A 206 1306 294 HOH HOH . E 5 HOH A 207 1307 165 HOH HOH . E 5 HOH A 208 1308 82 HOH HOH . E 5 HOH A 209 1309 13 HOH HOH . E 5 HOH A 210 1310 79 HOH HOH . E 5 HOH A 211 1311 121 HOH HOH . E 5 HOH A 212 1312 201 HOH HOH . E 5 HOH A 213 1313 94 HOH HOH . E 5 HOH A 214 1314 285 HOH HOH . E 5 HOH A 215 1315 260 HOH HOH . E 5 HOH A 216 1316 25 HOH HOH . E 5 HOH A 217 1317 53 HOH HOH . E 5 HOH A 218 1318 157 HOH HOH . E 5 HOH A 219 1319 115 HOH HOH . E 5 HOH A 220 1320 250 HOH HOH . E 5 HOH A 221 1321 215 HOH HOH . E 5 HOH A 222 1322 171 HOH HOH . E 5 HOH A 223 1323 207 HOH HOH . E 5 HOH A 224 1324 150 HOH HOH . E 5 HOH A 225 1325 182 HOH HOH . E 5 HOH A 226 1326 159 HOH HOH . E 5 HOH A 227 1327 37 HOH HOH . E 5 HOH A 228 1328 64 HOH HOH . E 5 HOH A 229 1329 263 HOH HOH . E 5 HOH A 230 1330 90 HOH HOH . E 5 HOH A 231 1331 229 HOH HOH . E 5 HOH A 232 1332 55 HOH HOH . E 5 HOH A 233 1333 244 HOH HOH . E 5 HOH A 234 1334 284 HOH HOH . E 5 HOH A 235 1335 158 HOH HOH . E 5 HOH A 236 1336 122 HOH HOH . E 5 HOH A 237 1337 178 HOH HOH . E 5 HOH A 238 1338 106 HOH HOH . E 5 HOH A 239 1339 296 HOH HOH . E 5 HOH A 240 1340 87 HOH HOH . E 5 HOH A 241 1341 287 HOH HOH . E 5 HOH A 242 1342 7 HOH HOH . E 5 HOH A 243 1343 95 HOH HOH . E 5 HOH A 244 1344 60 HOH HOH . E 5 HOH A 245 1345 118 HOH HOH . E 5 HOH A 246 1346 241 HOH HOH . E 5 HOH A 247 1347 151 HOH HOH . E 5 HOH A 248 1348 154 HOH HOH . E 5 HOH A 249 1349 186 HOH HOH . E 5 HOH A 250 1350 23 HOH HOH . E 5 HOH A 251 1351 1 HOH HOH . E 5 HOH A 252 1352 198 HOH HOH . E 5 HOH A 253 1353 238 HOH HOH . E 5 HOH A 254 1354 69 HOH HOH . E 5 HOH A 255 1355 283 HOH HOH . E 5 HOH A 256 1356 249 HOH HOH . E 5 HOH A 257 1357 298 HOH HOH . E 5 HOH A 258 1358 219 HOH HOH . E 5 HOH A 259 1359 243 HOH HOH . E 5 HOH A 260 1360 232 HOH HOH . E 5 HOH A 261 1361 180 HOH HOH . E 5 HOH A 262 1362 274 HOH HOH . E 5 HOH A 263 1363 209 HOH HOH . E 5 HOH A 264 1364 235 HOH HOH . E 5 HOH A 265 1365 297 HOH HOH . E 5 HOH A 266 1366 242 HOH HOH . E 5 HOH A 267 1367 275 HOH HOH . E 5 HOH A 268 1368 271 HOH HOH . E 5 HOH A 269 1369 211 HOH HOH . E 5 HOH A 270 1370 202 HOH HOH . E 5 HOH A 271 1371 187 HOH HOH . E 5 HOH A 272 1372 204 HOH HOH . E 5 HOH A 273 1373 222 HOH HOH . E 5 HOH A 274 1374 300 HOH HOH . E 5 HOH A 275 1375 101 HOH HOH . E 5 HOH A 276 1376 247 HOH HOH . E 5 HOH A 277 1377 124 HOH HOH . E 5 HOH A 278 1378 288 HOH HOH . E 5 HOH A 279 1379 45 HOH HOH . E 5 HOH A 280 1380 113 HOH HOH . E 5 HOH A 281 1381 184 HOH HOH . E 5 HOH A 282 1382 290 HOH HOH . E 5 HOH A 283 1383 240 HOH HOH . E 5 HOH A 284 1384 248 HOH HOH . E 5 HOH A 285 1385 295 HOH HOH . E 5 HOH A 286 1386 277 HOH HOH . E 5 HOH A 287 1387 213 HOH HOH . E 5 HOH A 288 1388 280 HOH HOH . E 5 HOH A 289 1389 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 13.055 -1.765 5.97 1 29.84 ? C1 GOL 1002 A 1 HETATM 2 O O1 GOL . . . C 3 13.924 -1.422 4.859 1 30.43 ? O1 GOL 1002 A 1 HETATM 3 C C2 GOL . . . C 3 11.698 -1.238 5.43 1 30.9 ? C2 GOL 1002 A 1 HETATM 4 O O2 GOL . . . C 3 11.858 0.144 5.356 1 22.54 ? O2 GOL 1002 A 1 HETATM 5 C C3 GOL . . . C 3 11.6 -1.588 3.968 1 31.87 ? C3 GOL 1002 A 1 HETATM 6 O O3 GOL . . . C 3 11.683 -2.965 3.824 1 29.75 ? O3 GOL 1002 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #