data_6GNV
#
_model_server_result.job_id            95v4lJmgzNMpIZFSQesiZA 
_model_server_result.datetime_utc      '2024-11-08 21:12:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gnv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    6GNV 
#
_exptl.entry_id    6GNV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.83 
_cell.angle_gamma         90 
_cell.entry_id            6GNV 
_cell.length_a            48.7 
_cell.length_b            90.42 
_cell.length_c            53.68 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GNV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 207 n n 
C1 C2 GOL sing 208 n n 
C1 H11 GOL sing 209 n n 
C1 H12 GOL sing 210 n n 
O1 HO1 GOL sing 211 n n 
C2 O2 GOL sing 212 n n 
C2 C3 GOL sing 213 n n 
C2 H2 GOL sing 214 n n 
O2 HO2 GOL sing 215 n n 
C3 O3 GOL sing 216 n n 
C3 H31 GOL sing 217 n n 
C3 H32 GOL sing 218 n n 
O3 HO3 GOL sing 219 n n 
#
_atom_sites.entry_id                     6GNV 
_atom_sites.fract_transf_matrix[1][1]    0.020534 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.009501 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01106 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020526 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MYA A 1 501 1 MYA MYA . 
C 3 F5E A 1 502 1 F5E F5E . 
D 4 GOL A 1 503 1 GOL GOL . 
E 5 HOH A 1 601 185 HOH HOH . 
E 5 HOH A 2 602 93 HOH HOH . 
E 5 HOH A 3 603 190 HOH HOH . 
E 5 HOH A 4 604 26 HOH HOH . 
E 5 HOH A 5 605 152 HOH HOH . 
E 5 HOH A 6 606 208 HOH HOH . 
E 5 HOH A 7 607 83 HOH HOH . 
E 5 HOH A 8 608 49 HOH HOH . 
E 5 HOH A 9 609 205 HOH HOH . 
E 5 HOH A 10 610 209 HOH HOH . 
E 5 HOH A 11 611 39 HOH HOH . 
E 5 HOH A 12 612 90 HOH HOH . 
E 5 HOH A 13 613 76 HOH HOH . 
E 5 HOH A 14 614 124 HOH HOH . 
E 5 HOH A 15 615 75 HOH HOH . 
E 5 HOH A 16 616 131 HOH HOH . 
E 5 HOH A 17 617 80 HOH HOH . 
E 5 HOH A 18 618 68 HOH HOH . 
E 5 HOH A 19 619 21 HOH HOH . 
E 5 HOH A 20 620 138 HOH HOH . 
E 5 HOH A 21 621 62 HOH HOH . 
E 5 HOH A 22 622 64 HOH HOH . 
E 5 HOH A 23 623 118 HOH HOH . 
E 5 HOH A 24 624 36 HOH HOH . 
E 5 HOH A 25 625 91 HOH HOH . 
E 5 HOH A 26 626 16 HOH HOH . 
E 5 HOH A 27 627 37 HOH HOH . 
E 5 HOH A 28 628 12 HOH HOH . 
E 5 HOH A 29 629 8 HOH HOH . 
E 5 HOH A 30 630 184 HOH HOH . 
E 5 HOH A 31 631 65 HOH HOH . 
E 5 HOH A 32 632 173 HOH HOH . 
E 5 HOH A 33 633 142 HOH HOH . 
E 5 HOH A 34 634 153 HOH HOH . 
E 5 HOH A 35 635 121 HOH HOH . 
E 5 HOH A 36 636 160 HOH HOH . 
E 5 HOH A 37 637 53 HOH HOH . 
E 5 HOH A 38 638 1 HOH HOH . 
E 5 HOH A 39 639 187 HOH HOH . 
E 5 HOH A 40 640 175 HOH HOH . 
E 5 HOH A 41 641 116 HOH HOH . 
E 5 HOH A 42 642 217 HOH HOH . 
E 5 HOH A 43 643 9 HOH HOH . 
E 5 HOH A 44 644 104 HOH HOH . 
E 5 HOH A 45 645 14 HOH HOH . 
E 5 HOH A 46 646 51 HOH HOH . 
E 5 HOH A 47 647 202 HOH HOH . 
E 5 HOH A 48 648 101 HOH HOH . 
E 5 HOH A 49 649 220 HOH HOH . 
E 5 HOH A 50 650 13 HOH HOH . 
E 5 HOH A 51 651 19 HOH HOH . 
E 5 HOH A 52 652 45 HOH HOH . 
E 5 HOH A 53 653 48 HOH HOH . 
E 5 HOH A 54 654 42 HOH HOH . 
E 5 HOH A 55 655 144 HOH HOH . 
E 5 HOH A 56 656 2 HOH HOH . 
E 5 HOH A 57 657 96 HOH HOH . 
E 5 HOH A 58 658 189 HOH HOH . 
E 5 HOH A 59 659 221 HOH HOH . 
E 5 HOH A 60 660 214 HOH HOH . 
E 5 HOH A 61 661 146 HOH HOH . 
E 5 HOH A 62 662 207 HOH HOH . 
E 5 HOH A 63 663 119 HOH HOH . 
E 5 HOH A 64 664 194 HOH HOH . 
E 5 HOH A 65 665 44 HOH HOH . 
E 5 HOH A 66 666 141 HOH HOH . 
E 5 HOH A 67 667 6 HOH HOH . 
E 5 HOH A 68 668 27 HOH HOH . 
E 5 HOH A 69 669 170 HOH HOH . 
E 5 HOH A 70 670 193 HOH HOH . 
E 5 HOH A 71 671 108 HOH HOH . 
E 5 HOH A 72 672 88 HOH HOH . 
E 5 HOH A 73 673 105 HOH HOH . 
E 5 HOH A 74 674 125 HOH HOH . 
E 5 HOH A 75 675 115 HOH HOH . 
E 5 HOH A 76 676 57 HOH HOH . 
E 5 HOH A 77 677 20 HOH HOH . 
E 5 HOH A 78 678 218 HOH HOH . 
E 5 HOH A 79 679 198 HOH HOH . 
E 5 HOH A 80 680 174 HOH HOH . 
E 5 HOH A 81 681 232 HOH HOH . 
E 5 HOH A 82 682 92 HOH HOH . 
E 5 HOH A 83 683 191 HOH HOH . 
E 5 HOH A 84 684 122 HOH HOH . 
E 5 HOH A 85 685 7 HOH HOH . 
E 5 HOH A 86 686 79 HOH HOH . 
E 5 HOH A 87 687 50 HOH HOH . 
E 5 HOH A 88 688 23 HOH HOH . 
E 5 HOH A 89 689 5 HOH HOH . 
E 5 HOH A 90 690 63 HOH HOH . 
E 5 HOH A 91 691 167 HOH HOH . 
E 5 HOH A 92 692 33 HOH HOH . 
E 5 HOH A 93 693 182 HOH HOH . 
E 5 HOH A 94 694 81 HOH HOH . 
E 5 HOH A 95 695 151 HOH HOH . 
E 5 HOH A 96 696 60 HOH HOH . 
E 5 HOH A 97 697 235 HOH HOH . 
E 5 HOH A 98 698 32 HOH HOH . 
E 5 HOH A 99 699 70 HOH HOH . 
E 5 HOH A 100 700 203 HOH HOH . 
E 5 HOH A 101 701 132 HOH HOH . 
E 5 HOH A 102 702 158 HOH HOH . 
E 5 HOH A 103 703 123 HOH HOH . 
E 5 HOH A 104 704 223 HOH HOH . 
E 5 HOH A 105 705 25 HOH HOH . 
E 5 HOH A 106 706 186 HOH HOH . 
E 5 HOH A 107 707 215 HOH HOH . 
E 5 HOH A 108 708 29 HOH HOH . 
E 5 HOH A 109 709 55 HOH HOH . 
E 5 HOH A 110 710 165 HOH HOH . 
E 5 HOH A 111 711 211 HOH HOH . 
E 5 HOH A 112 712 4 HOH HOH . 
E 5 HOH A 113 713 22 HOH HOH . 
E 5 HOH A 114 714 84 HOH HOH . 
E 5 HOH A 115 715 180 HOH HOH . 
E 5 HOH A 116 716 239 HOH HOH . 
E 5 HOH A 117 717 210 HOH HOH . 
E 5 HOH A 118 718 54 HOH HOH . 
E 5 HOH A 119 719 73 HOH HOH . 
E 5 HOH A 120 720 95 HOH HOH . 
E 5 HOH A 121 721 111 HOH HOH . 
E 5 HOH A 122 722 3 HOH HOH . 
E 5 HOH A 123 723 212 HOH HOH . 
E 5 HOH A 124 724 148 HOH HOH . 
E 5 HOH A 125 725 34 HOH HOH . 
E 5 HOH A 126 726 236 HOH HOH . 
E 5 HOH A 127 727 10 HOH HOH . 
E 5 HOH A 128 728 35 HOH HOH . 
E 5 HOH A 129 729 15 HOH HOH . 
E 5 HOH A 130 730 38 HOH HOH . 
E 5 HOH A 131 731 113 HOH HOH . 
E 5 HOH A 132 732 66 HOH HOH . 
E 5 HOH A 133 733 67 HOH HOH . 
E 5 HOH A 134 734 128 HOH HOH . 
E 5 HOH A 135 735 234 HOH HOH . 
E 5 HOH A 136 736 143 HOH HOH . 
E 5 HOH A 137 737 17 HOH HOH . 
E 5 HOH A 138 738 41 HOH HOH . 
E 5 HOH A 139 739 94 HOH HOH . 
E 5 HOH A 140 740 163 HOH HOH . 
E 5 HOH A 141 741 238 HOH HOH . 
E 5 HOH A 142 742 178 HOH HOH . 
E 5 HOH A 143 743 24 HOH HOH . 
E 5 HOH A 144 744 149 HOH HOH . 
E 5 HOH A 145 745 40 HOH HOH . 
E 5 HOH A 146 746 47 HOH HOH . 
E 5 HOH A 147 747 169 HOH HOH . 
E 5 HOH A 148 748 166 HOH HOH . 
E 5 HOH A 149 749 157 HOH HOH . 
E 5 HOH A 150 750 86 HOH HOH . 
E 5 HOH A 151 751 59 HOH HOH . 
E 5 HOH A 152 752 219 HOH HOH . 
E 5 HOH A 153 753 46 HOH HOH . 
E 5 HOH A 154 754 18 HOH HOH . 
E 5 HOH A 155 755 154 HOH HOH . 
E 5 HOH A 156 756 133 HOH HOH . 
E 5 HOH A 157 757 183 HOH HOH . 
E 5 HOH A 158 758 147 HOH HOH . 
E 5 HOH A 159 759 172 HOH HOH . 
E 5 HOH A 160 760 134 HOH HOH . 
E 5 HOH A 161 761 233 HOH HOH . 
E 5 HOH A 162 762 99 HOH HOH . 
E 5 HOH A 163 763 103 HOH HOH . 
E 5 HOH A 164 764 130 HOH HOH . 
E 5 HOH A 165 765 197 HOH HOH . 
E 5 HOH A 166 766 30 HOH HOH . 
E 5 HOH A 167 767 78 HOH HOH . 
E 5 HOH A 168 768 139 HOH HOH . 
E 5 HOH A 169 769 162 HOH HOH . 
E 5 HOH A 170 770 106 HOH HOH . 
E 5 HOH A 171 771 137 HOH HOH . 
E 5 HOH A 172 772 77 HOH HOH . 
E 5 HOH A 173 773 188 HOH HOH . 
E 5 HOH A 174 774 177 HOH HOH . 
E 5 HOH A 175 775 222 HOH HOH . 
E 5 HOH A 176 776 224 HOH HOH . 
E 5 HOH A 177 777 159 HOH HOH . 
E 5 HOH A 178 778 156 HOH HOH . 
E 5 HOH A 179 779 74 HOH HOH . 
E 5 HOH A 180 780 171 HOH HOH . 
E 5 HOH A 181 781 161 HOH HOH . 
E 5 HOH A 182 782 145 HOH HOH . 
E 5 HOH A 183 783 58 HOH HOH . 
E 5 HOH A 184 784 179 HOH HOH . 
E 5 HOH A 185 785 150 HOH HOH . 
E 5 HOH A 186 786 231 HOH HOH . 
E 5 HOH A 187 787 61 HOH HOH . 
E 5 HOH A 188 788 127 HOH HOH . 
E 5 HOH A 189 789 43 HOH HOH . 
E 5 HOH A 190 790 100 HOH HOH . 
E 5 HOH A 191 791 176 HOH HOH . 
E 5 HOH A 192 792 237 HOH HOH . 
E 5 HOH A 193 793 107 HOH HOH . 
E 5 HOH A 194 794 56 HOH HOH . 
E 5 HOH A 195 795 82 HOH HOH . 
E 5 HOH A 196 796 136 HOH HOH . 
E 5 HOH A 197 797 226 HOH HOH . 
E 5 HOH A 198 798 192 HOH HOH . 
E 5 HOH A 199 799 206 HOH HOH . 
E 5 HOH A 200 800 102 HOH HOH . 
E 5 HOH A 201 801 31 HOH HOH . 
E 5 HOH A 202 802 11 HOH HOH . 
E 5 HOH A 203 803 120 HOH HOH . 
E 5 HOH A 204 804 97 HOH HOH . 
E 5 HOH A 205 805 87 HOH HOH . 
E 5 HOH A 206 806 155 HOH HOH . 
E 5 HOH A 207 807 114 HOH HOH . 
E 5 HOH A 208 808 89 HOH HOH . 
E 5 HOH A 209 809 195 HOH HOH . 
E 5 HOH A 210 810 196 HOH HOH . 
E 5 HOH A 211 811 112 HOH HOH . 
E 5 HOH A 212 812 201 HOH HOH . 
E 5 HOH A 213 813 168 HOH HOH . 
E 5 HOH A 214 814 204 HOH HOH . 
E 5 HOH A 215 815 181 HOH HOH . 
E 5 HOH A 216 816 140 HOH HOH . 
E 5 HOH A 217 817 199 HOH HOH . 
E 5 HOH A 218 818 135 HOH HOH . 
E 5 HOH A 219 819 216 HOH HOH . 
E 5 HOH A 220 820 225 HOH HOH . 
E 5 HOH A 221 821 71 HOH HOH . 
E 5 HOH A 222 822 213 HOH HOH . 
E 5 HOH A 223 823 85 HOH HOH . 
E 5 HOH A 224 824 117 HOH HOH . 
E 5 HOH A 225 825 126 HOH HOH . 
E 5 HOH A 226 826 98 HOH HOH . 
E 5 HOH A 227 827 200 HOH HOH . 
E 5 HOH A 228 828 164 HOH HOH . 
E 5 HOH A 229 829 229 HOH HOH . 
E 5 HOH A 230 830 110 HOH HOH . 
E 5 HOH A 231 831 227 HOH HOH . 
E 5 HOH A 232 832 109 HOH HOH . 
E 5 HOH A 233 833 228 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 11.222 -1.65 3.985 1 42.77 ? C1 GOL 503 A 1 
HETATM 2 O O1 GOL . . . D 4 11.478 -3.055 3.856 1 37.19 ? O1 GOL 503 A 1 
HETATM 3 C C2 GOL . . . D 4 12.196 -1.013 4.974 1 44.79 ? C2 GOL 503 A 1 
HETATM 4 O O2 GOL . . . D 4 11.617 0.161 5.546 1 31.15 ? O2 GOL 503 A 1 
HETATM 5 C C3 GOL . . . D 4 12.577 -1.991 6.101 1 44.18 ? C3 GOL 503 A 1 
HETATM 6 O O3 GOL . . . D 4 13.866 -1.624 6.584 1 45.82 ? O3 GOL 503 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#