data_6GOD
#
_model_server_result.job_id            nA1yzTLBHI9J2s_5fePNKA 
_model_server_result.datetime_utc      '2024-11-02 12:28:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6god 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    6GOD 
#
_exptl.entry_id    6GOD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GOD 
_cell.length_a            78.76 
_cell.length_b            78.76 
_cell.length_c            77.18 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GOD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 10 A GLY 10 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc2 A OG SER 17 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc3 A OG1 THR 35 A THR 35 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc4 A O ALA 59 A ALA 59 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc5 A O GLY 60 A GLY 60 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc6 A OH TYR 96 A TYR 96 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc7 B MG MG . A MG 201 1_555 C O2G GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc8 B MG MG . A MG 201 1_555 C O1B GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc9 B MG MG . A MG 201 1_555 F O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc10 B MG MG . A MG 201 1_555 F O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc11 E MG MG . A MG 204 1_555 F O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc12 E MG MG . A MG 204 1_555 F O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 180 n n 
C1 C2 GOL sing 181 n n 
C1 H11 GOL sing 182 n n 
C1 H12 GOL sing 183 n n 
O1 HO1 GOL sing 184 n n 
C2 O2 GOL sing 185 n n 
C2 C3 GOL sing 186 n n 
C2 H2 GOL sing 187 n n 
O2 HO2 GOL sing 188 n n 
C3 O3 GOL sing 189 n n 
C3 H31 GOL sing 190 n n 
C3 H32 GOL sing 191 n n 
O3 HO3 GOL sing 192 n n 
#
_atom_sites.entry_id                     6GOD 
_atom_sites.fract_transf_matrix[1][1]    0.012697 
_atom_sites.fract_transf_matrix[1][2]    0.007331 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014661 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012957 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 201 202 MG MG . 
C 3 GNP A 1 202 201 GNP GNP . 
D 4 GOL A 1 203 203 GOL GOL . 
E 2 MG A 1 204 97 MG MG . 
F 5 HOH A 1 301 82 HOH HOH . 
F 5 HOH A 2 302 1 HOH HOH . 
F 5 HOH A 3 303 10 HOH HOH . 
F 5 HOH A 4 304 74 HOH HOH . 
F 5 HOH A 5 305 70 HOH HOH . 
F 5 HOH A 6 306 40 HOH HOH . 
F 5 HOH A 7 307 48 HOH HOH . 
F 5 HOH A 8 308 19 HOH HOH . 
F 5 HOH A 9 309 2 HOH HOH . 
F 5 HOH A 10 310 11 HOH HOH . 
F 5 HOH A 11 311 18 HOH HOH . 
F 5 HOH A 12 312 30 HOH HOH . 
F 5 HOH A 13 313 35 HOH HOH . 
F 5 HOH A 14 314 7 HOH HOH . 
F 5 HOH A 15 315 17 HOH HOH . 
F 5 HOH A 16 316 36 HOH HOH . 
F 5 HOH A 17 317 15 HOH HOH . 
F 5 HOH A 18 318 53 HOH HOH . 
F 5 HOH A 19 319 95 HOH HOH . 
F 5 HOH A 20 320 5 HOH HOH . 
F 5 HOH A 21 321 64 HOH HOH . 
F 5 HOH A 22 322 12 HOH HOH . 
F 5 HOH A 23 323 71 HOH HOH . 
F 5 HOH A 24 324 43 HOH HOH . 
F 5 HOH A 25 325 27 HOH HOH . 
F 5 HOH A 26 326 8 HOH HOH . 
F 5 HOH A 27 327 22 HOH HOH . 
F 5 HOH A 28 328 32 HOH HOH . 
F 5 HOH A 29 329 76 HOH HOH . 
F 5 HOH A 30 330 6 HOH HOH . 
F 5 HOH A 31 331 54 HOH HOH . 
F 5 HOH A 32 332 3 HOH HOH . 
F 5 HOH A 33 333 23 HOH HOH . 
F 5 HOH A 34 334 1 HOH HOH . 
F 5 HOH A 35 335 24 HOH HOH . 
F 5 HOH A 36 336 25 HOH HOH . 
F 5 HOH A 37 337 45 HOH HOH . 
F 5 HOH A 38 338 52 HOH HOH . 
F 5 HOH A 39 339 44 HOH HOH . 
F 5 HOH A 40 340 20 HOH HOH . 
F 5 HOH A 41 341 2 HOH HOH . 
F 5 HOH A 42 342 9 HOH HOH . 
F 5 HOH A 43 343 5 HOH HOH . 
F 5 HOH A 44 344 56 HOH HOH . 
F 5 HOH A 45 345 57 HOH HOH . 
F 5 HOH A 46 346 4 HOH HOH . 
F 5 HOH A 47 347 33 HOH HOH . 
F 5 HOH A 48 348 68 HOH HOH . 
F 5 HOH A 49 349 83 HOH HOH . 
F 5 HOH A 50 350 72 HOH HOH . 
F 5 HOH A 51 351 92 HOH HOH . 
F 5 HOH A 52 352 65 HOH HOH . 
F 5 HOH A 53 353 14 HOH HOH . 
F 5 HOH A 54 354 31 HOH HOH . 
F 5 HOH A 55 355 37 HOH HOH . 
F 5 HOH A 56 356 90 HOH HOH . 
F 5 HOH A 57 357 21 HOH HOH . 
F 5 HOH A 58 358 42 HOH HOH . 
F 5 HOH A 59 359 86 HOH HOH . 
F 5 HOH A 60 360 63 HOH HOH . 
F 5 HOH A 61 361 91 HOH HOH . 
F 5 HOH A 62 362 4 HOH HOH . 
F 5 HOH A 63 363 16 HOH HOH . 
F 5 HOH A 64 364 84 HOH HOH . 
F 5 HOH A 65 365 39 HOH HOH . 
F 5 HOH A 66 366 26 HOH HOH . 
F 5 HOH A 67 367 73 HOH HOH . 
F 5 HOH A 68 368 96 HOH HOH . 
F 5 HOH A 69 369 75 HOH HOH . 
F 5 HOH A 70 370 29 HOH HOH . 
F 5 HOH A 71 371 38 HOH HOH . 
F 5 HOH A 72 372 51 HOH HOH . 
F 5 HOH A 73 373 50 HOH HOH . 
F 5 HOH A 74 374 13 HOH HOH . 
F 5 HOH A 75 375 85 HOH HOH . 
F 5 HOH A 76 376 41 HOH HOH . 
F 5 HOH A 77 377 3 HOH HOH . 
F 5 HOH A 78 378 69 HOH HOH . 
F 5 HOH A 79 379 78 HOH HOH . 
F 5 HOH A 80 380 81 HOH HOH . 
F 5 HOH A 81 381 79 HOH HOH . 
F 5 HOH A 82 382 58 HOH HOH . 
F 5 HOH A 83 383 61 HOH HOH . 
F 5 HOH A 84 384 49 HOH HOH . 
F 5 HOH A 85 385 28 HOH HOH . 
F 5 HOH A 86 386 80 HOH HOH . 
F 5 HOH A 87 387 47 HOH HOH . 
F 5 HOH A 88 388 55 HOH HOH . 
F 5 HOH A 89 389 94 HOH HOH . 
F 5 HOH A 90 390 34 HOH HOH . 
F 5 HOH A 91 391 87 HOH HOH . 
F 5 HOH A 92 392 88 HOH HOH . 
F 5 HOH A 93 393 93 HOH HOH . 
F 5 HOH A 94 394 62 HOH HOH . 
F 5 HOH A 95 395 89 HOH HOH . 
F 5 HOH A 96 396 60 HOH HOH . 
F 5 HOH A 97 397 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -13.487 0.103 20.082 1 52.47 ? C1 GOL 203 A 1 
HETATM 2 O O1 GOL . . . D 4 -14.407 0.696 19.141 1 49.47 ? O1 GOL 203 A 1 
HETATM 3 C C2 GOL . . . D 4 -12.039 0.241 19.611 1 55.46 ? C2 GOL 203 A 1 
HETATM 4 O O2 GOL . . . D 4 -11.821 1.563 19.042 1 66.7 ? O2 GOL 203 A 1 
HETATM 5 C C3 GOL . . . D 4 -11.096 -0.051 20.761 1 54.8 ? C3 GOL 203 A 1 
HETATM 6 O O3 GOL . . . D 4 -9.806 0.39 20.365 1 59.83 ? O3 GOL 203 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           440 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#