data_6GOE
#
_model_server_result.job_id            QW7psfZ1iwKo59BamFgkNw 
_model_server_result.datetime_utc      '2024-11-02 10:37:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6goe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    6GOE 
#
_exptl.entry_id    6GOE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GOE 
_cell.length_a            79.88 
_cell.length_b            79.88 
_cell.length_c            78.79 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GOE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 18 A SER 17 1_555 B MG MG . A MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 B MG MG . A MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc3 B MG MG . A MG 200 1_555 C O3G GNP . A GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc4 B MG MG . A MG 200 1_555 C O1B GNP . A GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc5 B MG MG . A MG 200 1_555 D O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc6 B MG MG . A MG 200 1_555 D O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     6GOE 
_atom_sites.fract_transf_matrix[1][1]    0.012519 
_atom_sites.fract_transf_matrix[1][2]    0.007228 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014455 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012692 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 200 200 MG MG . 
C 3 GNP A 1 201 201 GNP GNP . 
D 4 HOH A 1 301 106 HOH HOH . 
D 4 HOH A 2 302 29 HOH HOH . 
D 4 HOH A 3 303 100 HOH HOH . 
D 4 HOH A 4 304 26 HOH HOH . 
D 4 HOH A 5 305 24 HOH HOH . 
D 4 HOH A 6 306 36 HOH HOH . 
D 4 HOH A 7 307 107 HOH HOH . 
D 4 HOH A 8 308 82 HOH HOH . 
D 4 HOH A 9 309 37 HOH HOH . 
D 4 HOH A 10 310 62 HOH HOH . 
D 4 HOH A 11 311 18 HOH HOH . 
D 4 HOH A 12 312 7 HOH HOH . 
D 4 HOH A 13 313 111 HOH HOH . 
D 4 HOH A 14 314 13 HOH HOH . 
D 4 HOH A 15 315 4 HOH HOH . 
D 4 HOH A 16 316 67 HOH HOH . 
D 4 HOH A 17 317 43 HOH HOH . 
D 4 HOH A 18 318 93 HOH HOH . 
D 4 HOH A 19 319 30 HOH HOH . 
D 4 HOH A 20 320 55 HOH HOH . 
D 4 HOH A 21 321 1 HOH HOH . 
D 4 HOH A 22 322 23 HOH HOH . 
D 4 HOH A 23 323 3 HOH HOH . 
D 4 HOH A 24 324 2 HOH HOH . 
D 4 HOH A 25 325 57 HOH HOH . 
D 4 HOH A 26 326 47 HOH HOH . 
D 4 HOH A 27 327 12 HOH HOH . 
D 4 HOH A 28 328 15 HOH HOH . 
D 4 HOH A 29 329 73 HOH HOH . 
D 4 HOH A 30 330 105 HOH HOH . 
D 4 HOH A 31 331 38 HOH HOH . 
D 4 HOH A 32 332 10 HOH HOH . 
D 4 HOH A 33 333 53 HOH HOH . 
D 4 HOH A 34 334 11 HOH HOH . 
D 4 HOH A 35 335 45 HOH HOH . 
D 4 HOH A 36 336 48 HOH HOH . 
D 4 HOH A 37 337 94 HOH HOH . 
D 4 HOH A 38 338 56 HOH HOH . 
D 4 HOH A 39 339 69 HOH HOH . 
D 4 HOH A 40 340 20 HOH HOH . 
D 4 HOH A 41 341 39 HOH HOH . 
D 4 HOH A 42 342 17 HOH HOH . 
D 4 HOH A 43 343 58 HOH HOH . 
D 4 HOH A 44 344 31 HOH HOH . 
D 4 HOH A 45 345 22 HOH HOH . 
D 4 HOH A 46 346 102 HOH HOH . 
D 4 HOH A 47 347 99 HOH HOH . 
D 4 HOH A 48 348 52 HOH HOH . 
D 4 HOH A 49 349 64 HOH HOH . 
D 4 HOH A 50 350 51 HOH HOH . 
D 4 HOH A 51 351 42 HOH HOH . 
D 4 HOH A 52 352 65 HOH HOH . 
D 4 HOH A 53 353 25 HOH HOH . 
D 4 HOH A 54 354 89 HOH HOH . 
D 4 HOH A 55 355 81 HOH HOH . 
D 4 HOH A 56 356 49 HOH HOH . 
D 4 HOH A 57 357 110 HOH HOH . 
D 4 HOH A 58 358 98 HOH HOH . 
D 4 HOH A 59 359 63 HOH HOH . 
D 4 HOH A 60 360 59 HOH HOH . 
D 4 HOH A 61 361 50 HOH HOH . 
D 4 HOH A 62 362 6 HOH HOH . 
D 4 HOH A 63 363 19 HOH HOH . 
D 4 HOH A 64 364 103 HOH HOH . 
D 4 HOH A 65 365 68 HOH HOH . 
D 4 HOH A 66 366 44 HOH HOH . 
D 4 HOH A 67 367 9 HOH HOH . 
D 4 HOH A 68 368 92 HOH HOH . 
D 4 HOH A 69 369 61 HOH HOH . 
D 4 HOH A 70 370 46 HOH HOH . 
D 4 HOH A 71 371 5 HOH HOH . 
D 4 HOH A 72 372 32 HOH HOH . 
D 4 HOH A 73 373 16 HOH HOH . 
D 4 HOH A 74 374 8 HOH HOH . 
D 4 HOH A 75 375 33 HOH HOH . 
D 4 HOH A 76 376 60 HOH HOH . 
D 4 HOH A 77 377 108 HOH HOH . 
D 4 HOH A 78 378 27 HOH HOH . 
D 4 HOH A 79 379 91 HOH HOH . 
D 4 HOH A 80 380 40 HOH HOH . 
D 4 HOH A 81 381 14 HOH HOH . 
D 4 HOH A 82 382 28 HOH HOH . 
D 4 HOH A 83 383 97 HOH HOH . 
D 4 HOH A 84 384 34 HOH HOH . 
D 4 HOH A 85 385 66 HOH HOH . 
D 4 HOH A 86 386 54 HOH HOH . 
D 4 HOH A 87 387 85 HOH HOH . 
D 4 HOH A 88 388 83 HOH HOH . 
D 4 HOH A 89 389 90 HOH HOH . 
D 4 HOH A 90 390 104 HOH HOH . 
D 4 HOH A 91 391 77 HOH HOH . 
D 4 HOH A 92 392 80 HOH HOH . 
D 4 HOH A 93 393 79 HOH HOH . 
D 4 HOH A 94 394 74 HOH HOH . 
D 4 HOH A 95 395 112 HOH HOH . 
D 4 HOH A 96 396 109 HOH HOH . 
D 4 HOH A 97 397 84 HOH HOH . 
D 4 HOH A 98 398 76 HOH HOH . 
D 4 HOH A 99 399 21 HOH HOH . 
D 4 HOH A 100 400 101 HOH HOH . 
D 4 HOH A 101 401 88 HOH HOH . 
D 4 HOH A 102 402 87 HOH HOH . 
D 4 HOH A 103 403 78 HOH HOH . 
D 4 HOH A 104 404 95 HOH HOH . 
D 4 HOH A 105 405 71 HOH HOH . 
D 4 HOH A 106 406 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . C 3 -8.058 -12.553 17.119 1 25.38 ? PG GNP 201 A 1 
HETATM 2 O O1G GNP . . . C 3 -6.848 -12.309 16.063 1 24.23 ? O1G GNP 201 A 1 
HETATM 3 O O2G GNP . . . C 3 -8.699 -11.221 17.589 1 23.62 ? O2G GNP 201 A 1 
HETATM 4 O O3G GNP . . . C 3 -9.102 -13.406 16.489 1 23.55 ? O3G GNP 201 A 1 
HETATM 5 N N3B GNP . . . C 3 -7.244 -13.352 18.403 1 22.84 ? N3B GNP 201 A 1 
HETATM 6 P PB GNP . . . C 3 -8.214 -13.976 19.702 1 20.65 ? PB GNP 201 A 1 
HETATM 7 O O1B GNP . . . C 3 -9.284 -14.956 19.115 1 17.51 ? O1B GNP 201 A 1 
HETATM 8 O O2B GNP . . . C 3 -8.756 -12.988 20.712 1 19.28 ? O2B GNP 201 A 1 
HETATM 9 O O3A GNP . . . C 3 -7.11 -14.899 20.433 1 18.9 ? O3A GNP 201 A 1 
HETATM 10 P PA GNP . . . C 3 -6.812 -16.511 20.317 1 21.34 ? PA GNP 201 A 1 
HETATM 11 O O1A GNP . . . C 3 -6.359 -16.734 18.835 1 25.48 ? O1A GNP 201 A 1 
HETATM 12 O O2A GNP . . . C 3 -7.958 -17.315 20.763 1 20.83 ? O2A GNP 201 A 1 
HETATM 13 O O5' GNP . . . C 3 -5.539 -16.692 21.19 1 19.29 ? O5' GNP 201 A 1 
HETATM 14 C C5' GNP . . . C 3 -4.3 -15.952 21.003 1 22.84 ? C5' GNP 201 A 1 
HETATM 15 C C4' GNP . . . C 3 -3.057 -16.594 21.566 1 24.99 ? C4' GNP 201 A 1 
HETATM 16 O O4' GNP . . . C 3 -3.208 -16.541 23.023 1 22.5 ? O4' GNP 201 A 1 
HETATM 17 C C3' GNP . . . C 3 -2.849 -18.057 21.209 1 22.81 ? C3' GNP 201 A 1 
HETATM 18 O O3' GNP . . . C 3 -1.44 -18.336 21.22 1 25.02 ? O3' GNP 201 A 1 
HETATM 19 C C2' GNP . . . C 3 -3.56 -18.772 22.371 1 21.08 ? C2' GNP 201 A 1 
HETATM 20 O O2' GNP . . . C 3 -3.115 -20.052 22.599 1 26.06 ? O2' GNP 201 A 1 
HETATM 21 C C1' GNP . . . C 3 -3.241 -17.891 23.559 1 22.86 ? C1' GNP 201 A 1 
HETATM 22 N N9 GNP . . . C 3 -4.247 -17.952 24.666 1 19.47 ? N9 GNP 201 A 1 
HETATM 23 C C8 GNP . . . C 3 -5.591 -17.737 24.504 1 20.25 ? C8 GNP 201 A 1 
HETATM 24 N N7 GNP . . . C 3 -6.232 -17.841 25.692 1 19.49 ? N7 GNP 201 A 1 
HETATM 25 C C5 GNP . . . C 3 -5.25 -18.09 26.615 1 17.08 ? C5 GNP 201 A 1 
HETATM 26 C C6 GNP . . . C 3 -5.185 -18.377 28.043 1 19.12 ? C6 GNP 201 A 1 
HETATM 27 O O6 GNP . . . C 3 -6.217 -18.321 28.838 1 18.53 ? O6 GNP 201 A 1 
HETATM 28 N N1 GNP . . . C 3 -3.97 -18.557 28.629 1 18.79 ? N1 GNP 201 A 1 
HETATM 29 C C2 GNP . . . C 3 -2.817 -18.663 27.921 1 20.5 ? C2 GNP 201 A 1 
HETATM 30 N N2 GNP . . . C 3 -1.659 -18.906 28.594 1 23.19 ? N2 GNP 201 A 1 
HETATM 31 N N3 GNP . . . C 3 -2.797 -18.413 26.591 1 19.34 ? N3 GNP 201 A 1 
HETATM 32 C C4 GNP . . . C 3 -3.959 -18.21 25.902 1 18.05 ? C4 GNP 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           32 
#