data_6GOF # _model_server_result.job_id gvzuljf1akUbWJG6ByWGgg _model_server_result.datetime_utc '2024-11-02 12:31:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6GOF # _exptl.entry_id 6GOF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GOF _cell.length_a 78.63 _cell.length_b 78.63 _cell.length_c 77.54 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GOF _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 10 A GLY 10 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc2 A OG SER 17 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 A OG1 THR 35 A THR 35 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc4 A O ALA 59 A ALA 59 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc5 A O GLY 60 A GLY 60 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc6 A OH TYR 96 A TYR 96 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc7 B MG MG . A MG 201 1_555 C O2B GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc8 B MG MG . A MG 201 1_555 C O2G GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc9 B MG MG . A MG 201 1_555 E O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc10 B MG MG . A MG 201 1_555 E O HOH . A HOH 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc11 D MG MG . A MG 203 1_555 E O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 6GOF _atom_sites.fract_transf_matrix[1][1] 0.012718 _atom_sites.fract_transf_matrix[1][2] 0.007343 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 202 MG MG . C 3 GNP A 1 202 201 GNP GNP . D 2 MG A 1 203 1 MG MG . E 4 HOH A 1 301 118 HOH HOH . E 4 HOH A 2 302 83 HOH HOH . E 4 HOH A 3 303 70 HOH HOH . E 4 HOH A 4 304 100 HOH HOH . E 4 HOH A 5 305 111 HOH HOH . E 4 HOH A 6 306 67 HOH HOH . E 4 HOH A 7 307 16 HOH HOH . E 4 HOH A 8 308 105 HOH HOH . E 4 HOH A 9 309 68 HOH HOH . E 4 HOH A 10 310 42 HOH HOH . E 4 HOH A 11 311 13 HOH HOH . E 4 HOH A 12 312 9 HOH HOH . E 4 HOH A 13 313 12 HOH HOH . E 4 HOH A 14 314 28 HOH HOH . E 4 HOH A 15 315 112 HOH HOH . E 4 HOH A 16 316 7 HOH HOH . E 4 HOH A 17 317 60 HOH HOH . E 4 HOH A 18 318 3 HOH HOH . E 4 HOH A 19 319 99 HOH HOH . E 4 HOH A 20 320 2 HOH HOH . E 4 HOH A 21 321 36 HOH HOH . E 4 HOH A 22 322 109 HOH HOH . E 4 HOH A 23 323 75 HOH HOH . E 4 HOH A 24 324 98 HOH HOH . E 4 HOH A 25 325 48 HOH HOH . E 4 HOH A 26 326 74 HOH HOH . E 4 HOH A 27 327 53 HOH HOH . E 4 HOH A 28 328 96 HOH HOH . E 4 HOH A 29 329 97 HOH HOH . E 4 HOH A 30 330 1 HOH HOH . E 4 HOH A 31 331 30 HOH HOH . E 4 HOH A 32 332 4 HOH HOH . E 4 HOH A 33 333 61 HOH HOH . E 4 HOH A 34 334 5 HOH HOH . E 4 HOH A 35 335 26 HOH HOH . E 4 HOH A 36 336 38 HOH HOH . E 4 HOH A 37 337 59 HOH HOH . E 4 HOH A 38 338 73 HOH HOH . E 4 HOH A 39 339 32 HOH HOH . E 4 HOH A 40 340 14 HOH HOH . E 4 HOH A 41 341 22 HOH HOH . E 4 HOH A 42 342 18 HOH HOH . E 4 HOH A 43 343 84 HOH HOH . E 4 HOH A 44 344 94 HOH HOH . E 4 HOH A 45 345 86 HOH HOH . E 4 HOH A 46 346 6 HOH HOH . E 4 HOH A 47 347 24 HOH HOH . E 4 HOH A 48 348 21 HOH HOH . E 4 HOH A 49 349 34 HOH HOH . E 4 HOH A 50 350 8 HOH HOH . E 4 HOH A 51 351 82 HOH HOH . E 4 HOH A 52 352 101 HOH HOH . E 4 HOH A 53 353 37 HOH HOH . E 4 HOH A 54 354 10 HOH HOH . E 4 HOH A 55 355 49 HOH HOH . E 4 HOH A 56 356 54 HOH HOH . E 4 HOH A 57 357 15 HOH HOH . E 4 HOH A 58 358 19 HOH HOH . E 4 HOH A 59 359 33 HOH HOH . E 4 HOH A 60 360 39 HOH HOH . E 4 HOH A 61 361 92 HOH HOH . E 4 HOH A 62 362 90 HOH HOH . E 4 HOH A 63 363 41 HOH HOH . E 4 HOH A 64 364 50 HOH HOH . E 4 HOH A 65 365 87 HOH HOH . E 4 HOH A 66 366 25 HOH HOH . E 4 HOH A 67 367 80 HOH HOH . E 4 HOH A 68 368 29 HOH HOH . E 4 HOH A 69 369 43 HOH HOH . E 4 HOH A 70 370 72 HOH HOH . E 4 HOH A 71 371 81 HOH HOH . E 4 HOH A 72 372 88 HOH HOH . E 4 HOH A 73 373 76 HOH HOH . E 4 HOH A 74 374 64 HOH HOH . E 4 HOH A 75 375 91 HOH HOH . E 4 HOH A 76 376 110 HOH HOH . E 4 HOH A 77 377 57 HOH HOH . E 4 HOH A 78 378 117 HOH HOH . E 4 HOH A 79 379 55 HOH HOH . E 4 HOH A 80 380 56 HOH HOH . E 4 HOH A 81 381 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 14.685 0.689 6.539 1 29.75 ? PG GNP 202 A 1 HETATM 2 O O1G GNP . . . C 3 13.881 1.831 6.049 1 28.27 ? O1G GNP 202 A 1 HETATM 3 O O2G GNP . . . C 3 16.072 1.289 7.044 1 29.25 ? O2G GNP 202 A 1 HETATM 4 O O3G GNP . . . C 3 13.871 -0.108 7.653 1 34.19 ? O3G GNP 202 A 1 HETATM 5 N N3B GNP . . . C 3 15.002 -0.384 5.232 1 26.34 ? N3B GNP 202 A 1 HETATM 6 P PB GNP . . . C 3 16.013 0.107 3.943 1 25.93 ? PB GNP 202 A 1 HETATM 7 O O1B GNP . . . C 3 15.402 1.17 2.919 1 21.23 ? O1B GNP 202 A 1 HETATM 8 O O2B GNP . . . C 3 17.39 0.5 4.394 1 24.03 ? O2B GNP 202 A 1 HETATM 9 O O3A GNP . . . C 3 16.19 -1.273 3.149 1 24.57 ? O3A GNP 202 A 1 HETATM 10 P PA GNP . . . C 3 17.433 -2.275 3.374 1 28.55 ? PA GNP 202 A 1 HETATM 11 O O1A GNP . . . C 3 18.715 -1.791 2.793 1 25.73 ? O1A GNP 202 A 1 HETATM 12 O O2A GNP . . . C 3 17.473 -2.716 4.825 1 31.04 ? O2A GNP 202 A 1 HETATM 13 O O5' GNP . . . C 3 16.94 -3.51 2.513 1 25.22 ? O5' GNP 202 A 1 HETATM 14 C C5' GNP . . . C 3 15.724 -4.195 2.836 1 29.73 ? C5' GNP 202 A 1 HETATM 15 C C4' GNP . . . C 3 15.694 -5.561 2.154 1 29.13 ? C4' GNP 202 A 1 HETATM 16 O O4' GNP . . . C 3 15.748 -5.418 0.721 1 29.69 ? O4' GNP 202 A 1 HETATM 17 C C3' GNP . . . C 3 16.883 -6.442 2.503 1 30.52 ? C3' GNP 202 A 1 HETATM 18 O O3' GNP . . . C 3 16.466 -7.817 2.479 1 29.4 ? O3' GNP 202 A 1 HETATM 19 C C2' GNP . . . C 3 17.868 -6.21 1.37 1 28.82 ? C2' GNP 202 A 1 HETATM 20 O O2' GNP . . . C 3 18.762 -7.29 1.118 1 29.99 ? O2' GNP 202 A 1 HETATM 21 C C1' GNP . . . C 3 16.922 -6.046 0.195 1 26.29 ? C1' GNP 202 A 1 HETATM 22 N N9 GNP . . . C 3 17.499 -5.22 -0.888 1 24.51 ? N9 GNP 202 A 1 HETATM 23 C C8 GNP . . . C 3 17.984 -3.963 -0.782 1 24.75 ? C8 GNP 202 A 1 HETATM 24 N N7 GNP . . . C 3 18.408 -3.515 -1.977 1 24.57 ? N7 GNP 202 A 1 HETATM 25 C C5 GNP . . . C 3 18.152 -4.482 -2.881 1 23.75 ? C5 GNP 202 A 1 HETATM 26 C C6 GNP . . . C 3 18.337 -4.674 -4.33 1 24.9 ? C6 GNP 202 A 1 HETATM 27 O O6 GNP . . . C 3 18.851 -3.783 -5.041 1 25.95 ? O6 GNP 202 A 1 HETATM 28 N N1 GNP . . . C 3 17.952 -5.824 -4.875 1 23.17 ? N1 GNP 202 A 1 HETATM 29 C C2 GNP . . . C 3 17.398 -6.821 -4.148 1 26.36 ? C2 GNP 202 A 1 HETATM 30 N N2 GNP . . . C 3 17.018 -7.961 -4.763 1 25.34 ? N2 GNP 202 A 1 HETATM 31 N N3 GNP . . . C 3 17.185 -6.73 -2.812 1 24.36 ? N3 GNP 202 A 1 HETATM 32 C C4 GNP . . . C 3 17.558 -5.605 -2.147 1 23.81 ? C4 GNP 202 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 32 #