data_6GOH # _model_server_result.job_id fSvZ5g8NesMf5U1GyyVW0A _model_server_result.datetime_utc '2024-11-16 07:04:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6goh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 6GOH # _exptl.entry_id 6GOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 583.347 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'alkylated sulphonate-N,N-pyridylbenzimidazole-Pt complex' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GOH _cell.length_a 78.361 _cell.length_b 78.361 _cell.length_c 36.962 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 D PT PT . A PT 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.132 ? metalc ? metalc2 D PT PT . A PT 203 1_555 I O HOH . A HOH 333 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.396 ? metalc ? metalc3 E PT PT . A PT 204 1_555 I O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 E PT PT . A PT 204 1_555 I O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 H PT F7T . A F7T 207 1_555 I O HOH . A HOH 302 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc6 H PT F7T . A F7T 207 1_555 I O HOH . A HOH 304 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C15 H15 Cl2 N3 O3 Pt S 2' _chem_comp.formula_weight 583.347 _chem_comp.id F7T _chem_comp.mon_nstd_flag . _chem_comp.name 'alkylated sulphonate-N,N-pyridylbenzimidazole-Pt complex' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAU SAV F7T doub 92 n n SAV OAS F7T doub 93 n n SAV OAT F7T sing 94 n n SAV CAP F7T sing 95 n n CAP CAO F7T sing 96 n n CAO CAN F7T sing 97 n n CAN NAM F7T sing 98 n n NAM CAB F7T sing 99 n y NAM CAG F7T sing 100 n y CAB CAC F7T doub 101 n y CAB CAA F7T sing 102 n y CAC CAD F7T sing 103 n y CAD CAE F7T doub 104 n y CAE CAF F7T sing 105 n y CAF CAA F7T doub 106 n y CAA NAL F7T sing 107 n y NAL CAG F7T doub 108 n y NAL PT F7T sing 109 n n CAG CAH F7T sing 110 n n CAH NAQ F7T doub 111 n y CAH CAR F7T sing 112 n y NAQ CAI F7T sing 113 n y NAQ PT F7T sing 114 n n CAI CAK F7T doub 115 n y CAK CAJ F7T sing 116 n y CAJ CAR F7T doub 117 n y PT CL2 F7T sing 118 n n CAP H1 F7T sing 119 n n CAP H2 F7T sing 120 n n CAO H3 F7T sing 121 n n CAO H4 F7T sing 122 n n CAN H5 F7T sing 123 n n CAN H6 F7T sing 124 n n CAC H7 F7T sing 125 n n CAD H8 F7T sing 126 n n CAE H9 F7T sing 127 n n CAF H10 F7T sing 128 n n CAI H11 F7T sing 129 n n CAK H12 F7T sing 130 n n CAJ H13 F7T sing 131 n n CAR H14 F7T sing 132 n n PT CL1 F7T sing 133 n n OAT H16 F7T sing 134 n n # _atom_sites.entry_id 6GOH _atom_sites.fract_transf_matrix[1][1] 0.012761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 201 1 DMS DMS . C 2 DMS A 1 202 2 DMS DMS . D 3 PT A 1 203 2 PT PT . E 3 PT A 1 204 4 PT PT . F 4 CL A 1 205 3 CL CL . G 5 F7T A 1 206 1 F7T XXX . H 5 F7T A 1 207 2 F7T XXX . I 6 HOH A 1 301 19 HOH HOH . I 6 HOH A 2 302 83 HOH HOH . I 6 HOH A 3 303 59 HOH HOH . I 6 HOH A 4 304 82 HOH HOH . I 6 HOH A 5 305 93 HOH HOH . I 6 HOH A 6 306 14 HOH HOH . I 6 HOH A 7 307 74 HOH HOH . I 6 HOH A 8 308 67 HOH HOH . I 6 HOH A 9 309 77 HOH HOH . I 6 HOH A 10 310 7 HOH HOH . I 6 HOH A 11 311 49 HOH HOH . I 6 HOH A 12 312 37 HOH HOH . I 6 HOH A 13 313 21 HOH HOH . I 6 HOH A 14 314 79 HOH HOH . I 6 HOH A 15 315 23 HOH HOH . I 6 HOH A 16 316 9 HOH HOH . I 6 HOH A 17 317 71 HOH HOH . I 6 HOH A 18 318 6 HOH HOH . I 6 HOH A 19 319 70 HOH HOH . I 6 HOH A 20 320 86 HOH HOH . I 6 HOH A 21 321 18 HOH HOH . I 6 HOH A 22 322 38 HOH HOH . I 6 HOH A 23 323 66 HOH HOH . I 6 HOH A 24 324 36 HOH HOH . I 6 HOH A 25 325 12 HOH HOH . I 6 HOH A 26 326 43 HOH HOH . I 6 HOH A 27 327 11 HOH HOH . I 6 HOH A 28 328 80 HOH HOH . I 6 HOH A 29 329 53 HOH HOH . I 6 HOH A 30 330 68 HOH HOH . I 6 HOH A 31 331 73 HOH HOH . I 6 HOH A 32 332 17 HOH HOH . I 6 HOH A 33 333 76 HOH HOH . I 6 HOH A 34 334 33 HOH HOH . I 6 HOH A 35 335 40 HOH HOH . I 6 HOH A 36 336 58 HOH HOH . I 6 HOH A 37 337 10 HOH HOH . I 6 HOH A 38 338 47 HOH HOH . I 6 HOH A 39 339 24 HOH HOH . I 6 HOH A 40 340 41 HOH HOH . I 6 HOH A 41 341 56 HOH HOH . I 6 HOH A 42 342 52 HOH HOH . I 6 HOH A 43 343 51 HOH HOH . I 6 HOH A 44 344 50 HOH HOH . I 6 HOH A 45 345 84 HOH HOH . I 6 HOH A 46 346 39 HOH HOH . I 6 HOH A 47 347 78 HOH HOH . I 6 HOH A 48 348 35 HOH HOH . I 6 HOH A 49 349 57 HOH HOH . I 6 HOH A 50 350 89 HOH HOH . I 6 HOH A 51 351 13 HOH HOH . I 6 HOH A 52 352 87 HOH HOH . I 6 HOH A 53 353 65 HOH HOH . I 6 HOH A 54 354 22 HOH HOH . I 6 HOH A 55 355 91 HOH HOH . I 6 HOH A 56 356 88 HOH HOH . I 6 HOH A 57 357 26 HOH HOH . I 6 HOH A 58 358 5 HOH HOH . I 6 HOH A 59 359 44 HOH HOH . I 6 HOH A 60 360 81 HOH HOH . I 6 HOH A 61 361 45 HOH HOH . I 6 HOH A 62 362 69 HOH HOH . I 6 HOH A 63 363 25 HOH HOH . I 6 HOH A 64 364 54 HOH HOH . I 6 HOH A 65 365 15 HOH HOH . I 6 HOH A 66 366 85 HOH HOH . I 6 HOH A 67 367 2 HOH HOH . I 6 HOH A 68 368 90 HOH HOH . I 6 HOH A 69 369 92 HOH HOH . I 6 HOH A 70 370 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAU F7T . . . H 5 -24.553 7.25 -25.501 0.25 35.84 ? OAU F7T 207 A 1 HETATM 2 S SAV F7T . . . H 5 -24.792 5.901 -24.827 0.25 36.89 ? SAV F7T 207 A 1 HETATM 3 O OAS F7T . . . H 5 -26.248 5.463 -25.008 0.25 34.94 ? OAS F7T 207 A 1 HETATM 4 O OAT F7T . . . H 5 -24.474 6.041 -23.342 0.25 34.68 ? OAT F7T 207 A 1 HETATM 5 C CAP F7T . . . H 5 -23.708 4.668 -25.611 0.25 36.62 ? CAP F7T 207 A 1 HETATM 6 C CAO F7T . . . H 5 -24.721 4.002 -26.518 0.25 37.18 ? CAO F7T 207 A 1 HETATM 7 C CAN F7T . . . H 5 -24.068 2.669 -26.746 0.25 37.52 ? CAN F7T 207 A 1 HETATM 8 N NAM F7T . . . H 5 -24.746 1.871 -27.796 0.25 37.37 ? NAM F7T 207 A 1 HETATM 9 C CAB F7T . . . H 5 -23.94 1.72 -28.838 0.25 37.75 ? CAB F7T 207 A 1 HETATM 10 C CAC F7T . . . H 5 -22.835 2.363 -29.148 0.25 37.72 ? CAC F7T 207 A 1 HETATM 11 C CAD F7T . . . H 5 -22.247 2.106 -30.368 0.25 38.01 ? CAD F7T 207 A 1 HETATM 12 C CAE F7T . . . H 5 -22.726 1.106 -31.186 0.25 37.51 ? CAE F7T 207 A 1 HETATM 13 C CAF F7T . . . H 5 -23.858 0.435 -30.793 0.25 37.6 ? CAF F7T 207 A 1 HETATM 14 C CAA F7T . . . H 5 -24.413 0.763 -29.636 0.25 38.08 ? CAA F7T 207 A 1 HETATM 15 N NAL F7T . . . H 5 -25.45 0.254 -29.032 0.25 38.84 ? NAL F7T 207 A 1 HETATM 16 C CAG F7T . . . H 5 -25.617 0.864 -27.875 0.25 37.78 ? CAG F7T 207 A 1 HETATM 17 C CAH F7T . . . H 5 -26.654 0.555 -27.098 0.25 38.41 ? CAH F7T 207 A 1 HETATM 18 N NAQ F7T . . . H 5 -27.484 -0.429 -27.512 0.25 39.59 ? NAQ F7T 207 A 1 HETATM 19 C CAI F7T . . . H 5 -28.596 -0.779 -26.735 0.25 38.66 ? CAI F7T 207 A 1 HETATM 20 C CAK F7T . . . H 5 -28.801 -0.171 -25.502 0.25 38.28 ? CAK F7T 207 A 1 HETATM 21 C CAJ F7T . . . H 5 -27.925 0.815 -25.07 0.25 38.12 ? CAJ F7T 207 A 1 HETATM 22 C CAR F7T . . . H 5 -26.846 1.175 -25.868 0.25 38.41 ? CAR F7T 207 A 1 HETATM 23 PT PT F7T . . . H 5 -26.871 -1.173 -29.314 0.25 48.6 ? PT F7T 207 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #