data_6GOK
#
_model_server_result.job_id            yy5Ecc_0BGqqkk5bbQ0vIw 
_model_server_result.datetime_utc      '2024-12-12 11:37:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gok 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    6GOK 
#
_exptl.entry_id    6GOK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.42 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PALLADIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.61 
_cell.angle_gamma         90 
_cell.entry_id            6GOK 
_cell.length_a            100.282 
_cell.length_b            32.805 
_cell.length_c            72.661 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GOK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C PD PD . A PD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc2 A ND1 HIS 119 A HIS 119 1_555 D PD F6Q . A F6Q 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc3 C PD PD . A PD 201 1_555 G O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc4 C PD PD . A PD 201 1_555 G O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? 
metalc ? metalc5 D PD F6Q . A F6Q 202 1_555 G O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc6 B NE2 HIS 105 B HIS 105 1_555 E PD PD . B PD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? 
metalc ? metalc7 B ND1 HIS 119 B HIS 119 1_555 F PD F6Q . B F6Q 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
#
_chem_comp.formula           'Pd 2' 
_chem_comp.formula_weight    106.42 
_chem_comp.id                PD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PALLADIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6GOK 
_atom_sites.fract_transf_matrix[1][1]    0.009972 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000107 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030483 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013763 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PD A 1 201 1 PD PD . 
D 3 F6Q A 1 202 2 F6Q XXX . 
E 2 PD B 1 201 4 PD PD . 
F 3 F6Q B 1 202 3 F6Q XXX . 
G 4 HOH A 1 301 52 HOH HOH . 
G 4 HOH A 2 302 5 HOH HOH . 
G 4 HOH A 3 303 42 HOH HOH . 
G 4 HOH A 4 304 57 HOH HOH . 
G 4 HOH A 5 305 46 HOH HOH . 
G 4 HOH A 6 306 24 HOH HOH . 
G 4 HOH A 7 307 13 HOH HOH . 
G 4 HOH A 8 308 28 HOH HOH . 
G 4 HOH A 9 309 15 HOH HOH . 
G 4 HOH A 10 310 51 HOH HOH . 
G 4 HOH A 11 311 23 HOH HOH . 
G 4 HOH A 12 312 67 HOH HOH . 
G 4 HOH A 13 313 53 HOH HOH . 
G 4 HOH A 14 314 68 HOH HOH . 
G 4 HOH A 15 315 16 HOH HOH . 
G 4 HOH A 16 316 60 HOH HOH . 
G 4 HOH A 17 317 62 HOH HOH . 
G 4 HOH A 18 318 27 HOH HOH . 
G 4 HOH A 19 319 31 HOH HOH . 
G 4 HOH A 20 320 17 HOH HOH . 
G 4 HOH A 21 321 14 HOH HOH . 
G 4 HOH A 22 322 2 HOH HOH . 
G 4 HOH A 23 323 44 HOH HOH . 
G 4 HOH A 24 324 63 HOH HOH . 
G 4 HOH A 25 325 3 HOH HOH . 
G 4 HOH A 26 326 25 HOH HOH . 
G 4 HOH A 27 327 43 HOH HOH . 
G 4 HOH A 28 328 66 HOH HOH . 
H 4 HOH B 1 301 49 HOH HOH . 
H 4 HOH B 2 302 8 HOH HOH . 
H 4 HOH B 3 303 69 HOH HOH . 
H 4 HOH B 4 304 61 HOH HOH . 
H 4 HOH B 5 305 4 HOH HOH . 
H 4 HOH B 6 306 64 HOH HOH . 
H 4 HOH B 7 307 34 HOH HOH . 
H 4 HOH B 8 308 59 HOH HOH . 
H 4 HOH B 9 309 39 HOH HOH . 
H 4 HOH B 10 310 41 HOH HOH . 
H 4 HOH B 11 311 22 HOH HOH . 
H 4 HOH B 12 312 48 HOH HOH . 
H 4 HOH B 13 313 56 HOH HOH . 
H 4 HOH B 14 314 19 HOH HOH . 
H 4 HOH B 15 315 10 HOH HOH . 
H 4 HOH B 16 316 7 HOH HOH . 
H 4 HOH B 17 317 12 HOH HOH . 
H 4 HOH B 18 318 9 HOH HOH . 
H 4 HOH B 19 319 65 HOH HOH . 
H 4 HOH B 20 320 1 HOH HOH . 
H 4 HOH B 21 321 45 HOH HOH . 
H 4 HOH B 22 322 30 HOH HOH . 
H 4 HOH B 23 323 29 HOH HOH . 
H 4 HOH B 24 324 35 HOH HOH . 
H 4 HOH B 25 325 20 HOH HOH . 
H 4 HOH B 26 326 54 HOH HOH . 
H 4 HOH B 27 327 50 HOH HOH . 
H 4 HOH B 28 328 47 HOH HOH . 
H 4 HOH B 29 329 6 HOH HOH . 
H 4 HOH B 30 330 18 HOH HOH . 
H 4 HOH B 31 331 36 HOH HOH . 
H 4 HOH B 32 332 11 HOH HOH . 
H 4 HOH B 33 333 38 HOH HOH . 
H 4 HOH B 34 334 55 HOH HOH . 
H 4 HOH B 35 335 58 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           PD 
_atom_site.label_atom_id         PD 
_atom_site.label_comp_id         PD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               28.092 
_atom_site.Cartn_y               -25.398 
_atom_site.Cartn_z               90.192 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        55 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          PD 
_atom_site.auth_comp_id          PD 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#