data_6GPR # _model_server_result.job_id qBeoWfmMBv3AG2s8jLIQTA _model_server_result.datetime_utc '2024-11-13 06:07:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6GPR # _exptl.entry_id 6GPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.6 _cell.angle_gamma 90 _cell.entry_id 6GPR _cell.length_a 53.502 _cell.length_b 44.346 _cell.length_c 54.023 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 6GPR _atom_sites.fract_transf_matrix[1][1] 0.018691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008956 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CMP A 1 301 1 CMP CMP . C 3 HOH A 1 401 26 HOH HOH . C 3 HOH A 2 402 125 HOH HOH . C 3 HOH A 3 403 24 HOH HOH . C 3 HOH A 4 404 126 HOH HOH . C 3 HOH A 5 405 86 HOH HOH . C 3 HOH A 6 406 75 HOH HOH . C 3 HOH A 7 407 2 HOH HOH . C 3 HOH A 8 408 7 HOH HOH . C 3 HOH A 9 409 116 HOH HOH . C 3 HOH A 10 410 41 HOH HOH . C 3 HOH A 11 411 13 HOH HOH . C 3 HOH A 12 412 121 HOH HOH . C 3 HOH A 13 413 17 HOH HOH . C 3 HOH A 14 414 64 HOH HOH . C 3 HOH A 15 415 28 HOH HOH . C 3 HOH A 16 416 134 HOH HOH . C 3 HOH A 17 417 32 HOH HOH . C 3 HOH A 18 418 72 HOH HOH . C 3 HOH A 19 419 20 HOH HOH . C 3 HOH A 20 420 53 HOH HOH . C 3 HOH A 21 421 6 HOH HOH . C 3 HOH A 22 422 42 HOH HOH . C 3 HOH A 23 423 10 HOH HOH . C 3 HOH A 24 424 3 HOH HOH . C 3 HOH A 25 425 50 HOH HOH . C 3 HOH A 26 426 99 HOH HOH . C 3 HOH A 27 427 16 HOH HOH . C 3 HOH A 28 428 4 HOH HOH . C 3 HOH A 29 429 60 HOH HOH . C 3 HOH A 30 430 43 HOH HOH . C 3 HOH A 31 431 136 HOH HOH . C 3 HOH A 32 432 36 HOH HOH . C 3 HOH A 33 433 51 HOH HOH . C 3 HOH A 34 434 128 HOH HOH . C 3 HOH A 35 435 30 HOH HOH . C 3 HOH A 36 436 117 HOH HOH . C 3 HOH A 37 437 45 HOH HOH . C 3 HOH A 38 438 1 HOH HOH . C 3 HOH A 39 439 96 HOH HOH . C 3 HOH A 40 440 12 HOH HOH . C 3 HOH A 41 441 22 HOH HOH . C 3 HOH A 42 442 129 HOH HOH . C 3 HOH A 43 443 97 HOH HOH . C 3 HOH A 44 444 59 HOH HOH . C 3 HOH A 45 445 19 HOH HOH . C 3 HOH A 46 446 98 HOH HOH . C 3 HOH A 47 447 29 HOH HOH . C 3 HOH A 48 448 138 HOH HOH . C 3 HOH A 49 449 11 HOH HOH . C 3 HOH A 50 450 78 HOH HOH . C 3 HOH A 51 451 14 HOH HOH . C 3 HOH A 52 452 39 HOH HOH . C 3 HOH A 53 453 130 HOH HOH . C 3 HOH A 54 454 73 HOH HOH . C 3 HOH A 55 455 15 HOH HOH . C 3 HOH A 56 456 84 HOH HOH . C 3 HOH A 57 457 108 HOH HOH . C 3 HOH A 58 458 107 HOH HOH . C 3 HOH A 59 459 33 HOH HOH . C 3 HOH A 60 460 80 HOH HOH . C 3 HOH A 61 461 68 HOH HOH . C 3 HOH A 62 462 52 HOH HOH . C 3 HOH A 63 463 8 HOH HOH . C 3 HOH A 64 464 40 HOH HOH . C 3 HOH A 65 465 71 HOH HOH . C 3 HOH A 66 466 62 HOH HOH . C 3 HOH A 67 467 21 HOH HOH . C 3 HOH A 68 468 89 HOH HOH . C 3 HOH A 69 469 34 HOH HOH . C 3 HOH A 70 470 106 HOH HOH . C 3 HOH A 71 471 115 HOH HOH . C 3 HOH A 72 472 46 HOH HOH . C 3 HOH A 73 473 55 HOH HOH . C 3 HOH A 74 474 31 HOH HOH . C 3 HOH A 75 475 18 HOH HOH . C 3 HOH A 76 476 85 HOH HOH . C 3 HOH A 77 477 69 HOH HOH . C 3 HOH A 78 478 94 HOH HOH . C 3 HOH A 79 479 77 HOH HOH . C 3 HOH A 80 480 49 HOH HOH . C 3 HOH A 81 481 38 HOH HOH . C 3 HOH A 82 482 27 HOH HOH . C 3 HOH A 83 483 101 HOH HOH . C 3 HOH A 84 484 5 HOH HOH . C 3 HOH A 85 485 66 HOH HOH . C 3 HOH A 86 486 110 HOH HOH . C 3 HOH A 87 487 82 HOH HOH . C 3 HOH A 88 488 88 HOH HOH . C 3 HOH A 89 489 113 HOH HOH . C 3 HOH A 90 490 70 HOH HOH . C 3 HOH A 91 491 74 HOH HOH . C 3 HOH A 92 492 37 HOH HOH . C 3 HOH A 93 493 44 HOH HOH . C 3 HOH A 94 494 25 HOH HOH . C 3 HOH A 95 495 91 HOH HOH . C 3 HOH A 96 496 109 HOH HOH . C 3 HOH A 97 497 76 HOH HOH . C 3 HOH A 98 498 61 HOH HOH . C 3 HOH A 99 499 102 HOH HOH . C 3 HOH A 100 500 57 HOH HOH . C 3 HOH A 101 501 132 HOH HOH . C 3 HOH A 102 502 87 HOH HOH . C 3 HOH A 103 503 65 HOH HOH . C 3 HOH A 104 504 54 HOH HOH . C 3 HOH A 105 505 137 HOH HOH . C 3 HOH A 106 506 58 HOH HOH . C 3 HOH A 107 507 131 HOH HOH . C 3 HOH A 108 508 47 HOH HOH . C 3 HOH A 109 509 123 HOH HOH . C 3 HOH A 110 510 92 HOH HOH . C 3 HOH A 111 511 95 HOH HOH . C 3 HOH A 112 512 100 HOH HOH . C 3 HOH A 113 513 48 HOH HOH . C 3 HOH A 114 514 90 HOH HOH . C 3 HOH A 115 515 119 HOH HOH . C 3 HOH A 116 516 114 HOH HOH . C 3 HOH A 117 517 133 HOH HOH . C 3 HOH A 118 518 127 HOH HOH . C 3 HOH A 119 519 135 HOH HOH . C 3 HOH A 120 520 122 HOH HOH . C 3 HOH A 121 521 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . B 2 2.809 1.221 5.328 1 18.84 ? P CMP 301 A 1 HETATM 2 O O1P CMP . . . B 2 1.92 1.223 4.141 1 20.24 ? O1P CMP 301 A 1 HETATM 3 O O2P CMP . . . B 2 4.13 1.887 5.181 1 17.81 ? O2P CMP 301 A 1 HETATM 4 O O5' CMP . . . B 2 2.965 -0.264 5.947 1 17.82 ? O5' CMP 301 A 1 HETATM 5 C C5' CMP . . . B 2 3.55 -0.44 7.266 1 16.88 ? C5' CMP 301 A 1 HETATM 6 C C4' CMP . . . B 2 2.935 0.553 8.228 1 15.95 ? C4' CMP 301 A 1 HETATM 7 O O4' CMP . . . B 2 3.494 0.618 9.556 1 16.65 ? O4' CMP 301 A 1 HETATM 8 C C3' CMP . . . B 2 3.086 1.948 7.706 1 16.77 ? C3' CMP 301 A 1 HETATM 9 O O3' CMP . . . B 2 2.223 2.061 6.563 1 17.78 ? O3' CMP 301 A 1 HETATM 10 C C2' CMP . . . B 2 2.638 2.688 8.934 1 16.9 ? C2' CMP 301 A 1 HETATM 11 O O2' CMP . . . B 2 1.221 2.625 8.951 1 18.07 ? O2' CMP 301 A 1 HETATM 12 C C1' CMP . . . B 2 3.144 1.874 10.111 1 16.13 ? C1' CMP 301 A 1 HETATM 13 N N9 CMP . . . B 2 4.393 2.556 10.451 1 16.2 ? N9 CMP 301 A 1 HETATM 14 C C8 CMP . . . B 2 5.609 2.033 10.179 1 16.24 ? C8 CMP 301 A 1 HETATM 15 N N7 CMP . . . B 2 6.64 2.841 10.582 1 16.22 ? N7 CMP 301 A 1 HETATM 16 C C5 CMP . . . B 2 6.039 3.93 11.141 1 16.68 ? C5 CMP 301 A 1 HETATM 17 C C6 CMP . . . B 2 6.555 5.192 11.748 1 16.55 ? C6 CMP 301 A 1 HETATM 18 N N6 CMP . . . B 2 7.908 5.357 11.813 1 17.12 ? N6 CMP 301 A 1 HETATM 19 N N1 CMP . . . B 2 5.652 6.08 12.23 1 15.94 ? N1 CMP 301 A 1 HETATM 20 C C2 CMP . . . B 2 4.309 5.838 12.134 1 16.79 ? C2 CMP 301 A 1 HETATM 21 N N3 CMP . . . B 2 3.784 4.717 11.555 1 16.61 ? N3 CMP 301 A 1 HETATM 22 C C4 CMP . . . B 2 4.572 3.747 11.047 1 15.79 ? C4 CMP 301 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #