data_6GPU # _model_server_result.job_id MAQeBsELVidIJNgoRYbmSA _model_server_result.datetime_utc '2024-11-05 00:59:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gpu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 6GPU # _exptl.entry_id 6GPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GPU _cell.length_a 40.02 _cell.length_b 40.02 _cell.length_c 134.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N MET 1 A MET 1 1_555 E CO CO . A CO 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 A O MET 1 A MET 1 1_555 E CO CO . A CO 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc3 A OE2 GLU 95 A GLU 95 1_555 E CO CO . A CO 1004 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc4 D MG MG . A MG 1003 1_555 G O HOH . A HOH 1114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc5 D MG MG . A MG 1003 1_555 G O HOH . A HOH 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc6 D MG MG . A MG 1003 1_555 G O HOH . A HOH 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc7 D MG MG . A MG 1003 1_555 G O HOH . A HOH 1220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc8 D MG MG . A MG 1003 1_555 G O HOH . A HOH 1238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc9 D MG MG . A MG 1003 1_555 G O HOH . A HOH 1241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc10 E CO CO . A CO 1004 1_555 F O1 TRS . A TRS 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc11 E CO CO . A CO 1004 1_555 F N TRS . A TRS 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc12 E CO CO . A CO 1004 1_555 G O HOH . A HOH 1215 5_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 388 n n C C2 TRS sing 389 n n C C3 TRS sing 390 n n C N TRS sing 391 n n C1 O1 TRS sing 392 n n C1 H11 TRS sing 393 n n C1 H12 TRS sing 394 n n C2 O2 TRS sing 395 n n C2 H21 TRS sing 396 n n C2 H22 TRS sing 397 n n C3 O3 TRS sing 398 n n C3 H31 TRS sing 399 n n C3 H32 TRS sing 400 n n N HN1 TRS sing 401 n n N HN2 TRS sing 402 n n N HN3 TRS sing 403 n n O1 HO1 TRS sing 404 n n O2 HO2 TRS sing 405 n n O3 HO3 TRS sing 406 n n # _atom_sites.entry_id 6GPU _atom_sites.fract_transf_matrix[1][1] 0.024988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 1001 1001 FMN FMN . C 3 CL A 1 1002 1 CL CL . D 4 MG A 1 1003 1 MG MG . E 5 CO A 1 1004 1 CO CO . F 6 TRS A 1 1005 1 TRS TRS . G 7 HOH A 1 1101 148 HOH HOH . G 7 HOH A 2 1102 90 HOH HOH . G 7 HOH A 3 1103 136 HOH HOH . G 7 HOH A 4 1104 150 HOH HOH . G 7 HOH A 5 1105 39 HOH HOH . G 7 HOH A 6 1106 88 HOH HOH . G 7 HOH A 7 1107 170 HOH HOH . G 7 HOH A 8 1108 140 HOH HOH . G 7 HOH A 9 1109 154 HOH HOH . G 7 HOH A 10 1110 127 HOH HOH . G 7 HOH A 11 1111 149 HOH HOH . G 7 HOH A 12 1112 28 HOH HOH . G 7 HOH A 13 1113 116 HOH HOH . G 7 HOH A 14 1114 143 HOH HOH . G 7 HOH A 15 1115 82 HOH HOH . G 7 HOH A 16 1116 144 HOH HOH . G 7 HOH A 17 1117 166 HOH HOH . G 7 HOH A 18 1118 111 HOH HOH . G 7 HOH A 19 1119 46 HOH HOH . G 7 HOH A 20 1120 52 HOH HOH . G 7 HOH A 21 1121 134 HOH HOH . G 7 HOH A 22 1122 101 HOH HOH . G 7 HOH A 23 1123 10 HOH HOH . G 7 HOH A 24 1124 26 HOH HOH . G 7 HOH A 25 1125 60 HOH HOH . G 7 HOH A 26 1126 157 HOH HOH . G 7 HOH A 27 1127 142 HOH HOH . G 7 HOH A 28 1128 105 HOH HOH . G 7 HOH A 29 1129 139 HOH HOH . G 7 HOH A 30 1130 37 HOH HOH . G 7 HOH A 31 1131 14 HOH HOH . G 7 HOH A 32 1132 160 HOH HOH . G 7 HOH A 33 1133 159 HOH HOH . G 7 HOH A 34 1134 117 HOH HOH . G 7 HOH A 35 1135 129 HOH HOH . G 7 HOH A 36 1136 51 HOH HOH . G 7 HOH A 37 1137 31 HOH HOH . G 7 HOH A 38 1138 58 HOH HOH . G 7 HOH A 39 1139 67 HOH HOH . G 7 HOH A 40 1140 104 HOH HOH . G 7 HOH A 41 1141 163 HOH HOH . G 7 HOH A 42 1142 61 HOH HOH . G 7 HOH A 43 1143 19 HOH HOH . G 7 HOH A 44 1144 65 HOH HOH . G 7 HOH A 45 1145 29 HOH HOH . G 7 HOH A 46 1146 131 HOH HOH . G 7 HOH A 47 1147 7 HOH HOH . G 7 HOH A 48 1148 54 HOH HOH . G 7 HOH A 49 1149 48 HOH HOH . G 7 HOH A 50 1150 27 HOH HOH . G 7 HOH A 51 1151 32 HOH HOH . G 7 HOH A 52 1152 15 HOH HOH . G 7 HOH A 53 1153 68 HOH HOH . G 7 HOH A 54 1154 79 HOH HOH . G 7 HOH A 55 1155 42 HOH HOH . G 7 HOH A 56 1156 44 HOH HOH . G 7 HOH A 57 1157 141 HOH HOH . G 7 HOH A 58 1158 81 HOH HOH . G 7 HOH A 59 1159 30 HOH HOH . G 7 HOH A 60 1160 38 HOH HOH . G 7 HOH A 61 1161 119 HOH HOH . G 7 HOH A 62 1162 122 HOH HOH . G 7 HOH A 63 1163 151 HOH HOH . G 7 HOH A 64 1164 56 HOH HOH . G 7 HOH A 65 1165 135 HOH HOH . G 7 HOH A 66 1166 59 HOH HOH . G 7 HOH A 67 1167 13 HOH HOH . G 7 HOH A 68 1168 89 HOH HOH . G 7 HOH A 69 1169 55 HOH HOH . G 7 HOH A 70 1170 47 HOH HOH . G 7 HOH A 71 1171 12 HOH HOH . G 7 HOH A 72 1172 69 HOH HOH . G 7 HOH A 73 1173 6 HOH HOH . G 7 HOH A 74 1174 34 HOH HOH . G 7 HOH A 75 1175 2 HOH HOH . G 7 HOH A 76 1176 40 HOH HOH . G 7 HOH A 77 1177 73 HOH HOH . G 7 HOH A 78 1178 22 HOH HOH . G 7 HOH A 79 1179 164 HOH HOH . G 7 HOH A 80 1180 66 HOH HOH . G 7 HOH A 81 1181 50 HOH HOH . G 7 HOH A 82 1182 23 HOH HOH . G 7 HOH A 83 1183 41 HOH HOH . G 7 HOH A 84 1184 80 HOH HOH . G 7 HOH A 85 1185 92 HOH HOH . G 7 HOH A 86 1186 145 HOH HOH . G 7 HOH A 87 1187 64 HOH HOH . G 7 HOH A 88 1188 57 HOH HOH . G 7 HOH A 89 1189 16 HOH HOH . G 7 HOH A 90 1190 9 HOH HOH . G 7 HOH A 91 1191 155 HOH HOH . G 7 HOH A 92 1192 78 HOH HOH . G 7 HOH A 93 1193 109 HOH HOH . G 7 HOH A 94 1194 5 HOH HOH . G 7 HOH A 95 1195 21 HOH HOH . G 7 HOH A 96 1196 156 HOH HOH . G 7 HOH A 97 1197 53 HOH HOH . G 7 HOH A 98 1198 70 HOH HOH . G 7 HOH A 99 1199 45 HOH HOH . G 7 HOH A 100 1200 158 HOH HOH . G 7 HOH A 101 1201 11 HOH HOH . G 7 HOH A 102 1202 43 HOH HOH . G 7 HOH A 103 1203 162 HOH HOH . G 7 HOH A 104 1204 3 HOH HOH . G 7 HOH A 105 1205 49 HOH HOH . G 7 HOH A 106 1206 62 HOH HOH . G 7 HOH A 107 1207 17 HOH HOH . G 7 HOH A 108 1208 133 HOH HOH . G 7 HOH A 109 1209 118 HOH HOH . G 7 HOH A 110 1210 138 HOH HOH . G 7 HOH A 111 1211 63 HOH HOH . G 7 HOH A 112 1212 171 HOH HOH . G 7 HOH A 113 1213 124 HOH HOH . G 7 HOH A 114 1214 123 HOH HOH . G 7 HOH A 115 1215 74 HOH HOH . G 7 HOH A 116 1216 97 HOH HOH . G 7 HOH A 117 1217 103 HOH HOH . G 7 HOH A 118 1218 146 HOH HOH . G 7 HOH A 119 1219 120 HOH HOH . G 7 HOH A 120 1220 24 HOH HOH . G 7 HOH A 121 1221 96 HOH HOH . G 7 HOH A 122 1222 71 HOH HOH . G 7 HOH A 123 1223 95 HOH HOH . G 7 HOH A 124 1224 167 HOH HOH . G 7 HOH A 125 1225 169 HOH HOH . G 7 HOH A 126 1226 33 HOH HOH . G 7 HOH A 127 1227 132 HOH HOH . G 7 HOH A 128 1228 86 HOH HOH . G 7 HOH A 129 1229 115 HOH HOH . G 7 HOH A 130 1230 107 HOH HOH . G 7 HOH A 131 1231 153 HOH HOH . G 7 HOH A 132 1232 100 HOH HOH . G 7 HOH A 133 1233 91 HOH HOH . G 7 HOH A 134 1234 114 HOH HOH . G 7 HOH A 135 1235 172 HOH HOH . G 7 HOH A 136 1236 75 HOH HOH . G 7 HOH A 137 1237 126 HOH HOH . G 7 HOH A 138 1238 85 HOH HOH . G 7 HOH A 139 1239 102 HOH HOH . G 7 HOH A 140 1240 128 HOH HOH . G 7 HOH A 141 1241 84 HOH HOH . G 7 HOH A 142 1242 113 HOH HOH . G 7 HOH A 143 1243 161 HOH HOH . G 7 HOH A 144 1244 87 HOH HOH . G 7 HOH A 145 1245 130 HOH HOH . G 7 HOH A 146 1246 147 HOH HOH . G 7 HOH A 147 1247 93 HOH HOH . G 7 HOH A 148 1248 125 HOH HOH . G 7 HOH A 149 1249 152 HOH HOH . G 7 HOH A 150 1250 165 HOH HOH . G 7 HOH A 151 1251 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . F 6 11.729 -9.879 -24.947 0.7 12.77 ? C TRS 1005 A 1 HETATM 2 C C1 TRS . . . F 6 10.315 -10.331 -25.294 0.7 14.06 ? C1 TRS 1005 A 1 HETATM 3 C C2 TRS . . . F 6 12.461 -10.979 -24.189 0.7 13.87 ? C2 TRS 1005 A 1 HETATM 4 C C3 TRS . . . F 6 11.764 -8.582 -24.168 0.7 13.44 ? C3 TRS 1005 A 1 HETATM 5 N N TRS . . . F 6 12.43 -9.622 -26.221 0.7 13.25 ? N TRS 1005 A 1 HETATM 6 O O1 TRS . . . F 6 9.733 -9.425 -26.229 0.7 14.04 ? O1 TRS 1005 A 1 HETATM 7 O O2 TRS . . . F 6 13.842 -10.622 -23.962 0.7 14.73 ? O2 TRS 1005 A 1 HETATM 8 O O3 TRS . . . F 6 11.254 -8.711 -22.835 0.7 14.3 ? O3 TRS 1005 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #