data_6GQF # _model_server_result.job_id GUE7gHOa33VaIEaatYMryg _model_server_result.datetime_utc '2024-10-25 20:29:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":601}' # _entry.id 6GQF # _exptl.entry_id 6GQF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.653 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 25-HYDROXYCHOLESTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.84 _cell.angle_gamma 90 _cell.entry_id 6GQF _cell.length_a 52.435 _cell.length_b 121.012 _cell.length_c 71.907 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G,H 2 1 C,I,J 3 1 D,K,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 88 A CYS 419 1_555 D SG CYS 88 D CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 88 B CYS 419 1_555 C SG CYS 88 C CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C27 H46 O2' _chem_comp.formula_weight 402.653 _chem_comp.id HC3 _chem_comp.mon_nstd_flag . _chem_comp.name 25-HYDROXYCHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3BETA)-CHOLEST-5-ENE-3,25-DIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C13 HC3 sing 142 n n C18 H181 HC3 sing 143 n n C18 H182 HC3 sing 144 n n C18 H183 HC3 sing 145 n n C13 C12 HC3 sing 146 n n C13 C14 HC3 sing 147 n n C13 C17 HC3 sing 148 n n C12 C11 HC3 sing 149 n n C12 H121 HC3 sing 150 n n C12 H122 HC3 sing 151 n n C11 C9 HC3 sing 152 n n C11 H111 HC3 sing 153 n n C11 H112 HC3 sing 154 n n C9 C10 HC3 sing 155 n n C9 C8 HC3 sing 156 n n C9 H9 HC3 sing 157 n n C10 C19 HC3 sing 158 n n C10 C1 HC3 sing 159 n n C10 C5 HC3 sing 160 n n C19 H191 HC3 sing 161 n n C19 H192 HC3 sing 162 n n C19 H193 HC3 sing 163 n n C1 C2 HC3 sing 164 n n C1 H11 HC3 sing 165 n n C1 H12 HC3 sing 166 n n C2 C3 HC3 sing 167 n n C2 H21 HC3 sing 168 n n C2 H22 HC3 sing 169 n n C3 O1 HC3 sing 170 n n C3 C4 HC3 sing 171 n n C3 H3 HC3 sing 172 n n O1 HO1 HC3 sing 173 n n C4 C5 HC3 sing 174 n n C4 H41 HC3 sing 175 n n C4 H42 HC3 sing 176 n n C5 C6 HC3 doub 177 n n C6 C7 HC3 sing 178 n n C6 H6 HC3 sing 179 n n C7 C8 HC3 sing 180 n n C7 H71 HC3 sing 181 n n C7 H72 HC3 sing 182 n n C8 C14 HC3 sing 183 n n C8 H8 HC3 sing 184 n n C14 C15 HC3 sing 185 n n C14 H14 HC3 sing 186 n n C15 C16 HC3 sing 187 n n C15 H151 HC3 sing 188 n n C15 H152 HC3 sing 189 n n C16 C17 HC3 sing 190 n n C16 H161 HC3 sing 191 n n C16 H162 HC3 sing 192 n n C17 C20 HC3 sing 193 n n C17 H17 HC3 sing 194 n n C20 C21 HC3 sing 195 n n C20 C22 HC3 sing 196 n n C20 H20 HC3 sing 197 n n C21 H211 HC3 sing 198 n n C21 H212 HC3 sing 199 n n C21 H213 HC3 sing 200 n n C22 C23 HC3 sing 201 n n C22 H221 HC3 sing 202 n n C22 H222 HC3 sing 203 n n C23 C24 HC3 sing 204 n n C23 H231 HC3 sing 205 n n C23 H232 HC3 sing 206 n n C24 C25 HC3 sing 207 n n C24 H241 HC3 sing 208 n n C24 H242 HC3 sing 209 n n C25 C26 HC3 sing 210 n n C25 C27 HC3 sing 211 n n C25 O2 HC3 sing 212 n n C26 H261 HC3 sing 213 n n C26 H262 HC3 sing 214 n n C26 H263 HC3 sing 215 n n C27 H271 HC3 sing 216 n n C27 H272 HC3 sing 217 n n C27 H273 HC3 sing 218 n n O2 HO2 HC3 sing 219 n n # _atom_sites.entry_id 6GQF _atom_sites.fract_transf_matrix[1][1] 0.019071 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007259 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HC3 A 1 601 1 HC3 HC3 . F 3 GOL A 1 602 2 GOL GOL . G 2 HC3 B 1 601 1 HC3 HC3 . H 3 GOL B 1 602 2 GOL GOL . I 2 HC3 C 1 601 1 HC3 HC3 . J 3 GOL C 1 602 2 GOL GOL . K 2 HC3 D 1 601 1 HC3 HC3 . L 3 GOL D 1 602 2 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 HC3 . . . K 2 31.815 12.242 -9.592 1 80.63 ? C18 HC3 601 D 1 HETATM 2 C C13 HC3 . . . K 2 30.746 12.976 -8.794 1 82.18 ? C13 HC3 601 D 1 HETATM 3 C C12 HC3 . . . K 2 31.015 12.629 -7.424 1 81.31 ? C12 HC3 601 D 1 HETATM 4 C C11 HC3 . . . K 2 30.77 11.053 -7.049 1 82.34 ? C11 HC3 601 D 1 HETATM 5 C C9 HC3 . . . K 2 29.422 10.529 -7.534 1 82.91 ? C9 HC3 601 D 1 HETATM 6 C C10 HC3 . . . K 2 29.216 8.943 -7.246 1 84.44 ? C10 HC3 601 D 1 HETATM 7 C C19 HC3 . . . K 2 30.474 8.212 -7.671 1 85.69 ? C19 HC3 601 D 1 HETATM 8 C C1 HC3 . . . K 2 29.074 8.808 -5.721 1 82.56 ? C1 HC3 601 D 1 HETATM 9 C C2 HC3 . . . K 2 28.528 7.48 -5.264 1 86.61 ? C2 HC3 601 D 1 HETATM 10 C C3 HC3 . . . K 2 27.245 7.183 -5.957 1 88.61 ? C3 HC3 601 D 1 HETATM 11 O O1 HC3 . . . K 2 26.664 5.985 -5.447 1 87.94 ? O1 HC3 601 D 1 HETATM 12 C C4 HC3 . . . K 2 27.493 7.041 -7.456 1 85.69 ? C4 HC3 601 D 1 HETATM 13 C C5 HC3 . . . K 2 28.082 8.344 -8.006 1 84.78 ? C5 HC3 601 D 1 HETATM 14 C C6 HC3 . . . K 2 27.472 9.065 -9.379 1 76.45 ? C6 HC3 601 D 1 HETATM 15 C C7 HC3 . . . K 2 27.71 10.524 -9.54 1 78.03 ? C7 HC3 601 D 1 HETATM 16 C C8 HC3 . . . K 2 29.186 10.913 -8.994 1 79.11 ? C8 HC3 601 D 1 HETATM 17 C C14 HC3 . . . K 2 29.364 12.398 -9.197 1 81.99 ? C14 HC3 601 D 1 HETATM 18 C C15 HC3 . . . K 2 28.968 13.07 -10.612 1 78.37 ? C15 HC3 601 D 1 HETATM 19 C C16 HC3 . . . K 2 29.801 14.566 -10.594 1 81.17 ? C16 HC3 601 D 1 HETATM 20 C C17 HC3 . . . K 2 30.726 14.54 -9.363 1 85.67 ? C17 HC3 601 D 1 HETATM 21 C C20 HC3 . . . K 2 32.002 15.104 -9.718 1 89.86 ? C20 HC3 601 D 1 HETATM 22 C C21 HC3 . . . K 2 32.9 15.263 -8.456 1 80.37 ? C21 HC3 601 D 1 HETATM 23 C C22 HC3 . . . K 2 31.77 16.494 -10.393 1 90.41 ? C22 HC3 601 D 1 HETATM 24 C C23 HC3 . . . K 2 33.017 17.353 -10.396 1 91.59 ? C23 HC3 601 D 1 HETATM 25 C C24 HC3 . . . K 2 32.862 18.375 -11.499 1 90.28 ? C24 HC3 601 D 1 HETATM 26 C C25 HC3 . . . K 2 33.743 19.598 -11.317 1 92.24 ? C25 HC3 601 D 1 HETATM 27 C C26 HC3 . . . K 2 32.932 20.663 -10.615 1 88.7 ? C26 HC3 601 D 1 HETATM 28 C C27 HC3 . . . K 2 35.028 19.331 -10.555 1 85.41 ? C27 HC3 601 D 1 HETATM 29 O O2 HC3 . . . K 2 34.098 20.085 -12.586 1 93.45 ? O2 HC3 601 D 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 29 #