data_6GQW
#
_model_server_result.job_id            PMUAG-LDwktit88xiaAj4Q 
_model_server_result.datetime_utc      '2024-10-18 16:20:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gqw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":202}' 
#
_entry.id    6GQW 
#
_exptl.entry_id    6GQW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GQW 
_cell.length_a            63.484 
_cell.length_b            118.538 
_cell.length_c            156.527 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GQW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,W 1 1 
B,J,K,L,X 2 1 
C,M,N,O,Y 3 1 
D,P,Q,Z 4 1 
E,R,S,AA 5 1 
F,T,U,V,BA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 K N N 
? 4 N N N 
? 4 Q N N 
? 4 S N N 
? 4 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 21 A SER 17 1_555 G MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc2 A OG1 THR 39 A THR 35 1_555 G MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc3 A OD1 ASP 61 A ASP 57 1_555 G MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? 
metalc ? metalc4 G MG MG . A MG 201 1_555 H O2B GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc5 G MG MG . A MG 201 1_555 H O2G GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc6 G MG MG . A MG 201 1_555 W O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
metalc ? metalc7 B OG SER 21 B SER 17 1_555 J MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc8 B OG1 THR 39 B THR 35 1_555 J MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc9 J MG MG . B MG 201 1_555 K O2B GNP . B GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc10 J MG MG . B MG 201 1_555 K O2G GNP . B GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc11 J MG MG . B MG 201 1_555 X O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc12 J MG MG . B MG 201 1_555 X O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc13 C OG SER 21 C SER 17 1_555 M MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc14 C OG1 THR 39 C THR 35 1_555 M MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc15 M MG MG . C MG 201 1_555 N O1G GNP . C GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc16 M MG MG . C MG 201 1_555 N O1B GNP . C GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc17 D OG SER 21 D SER 17 1_555 P MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc18 D OD1 ASP 61 D ASP 57 1_555 P MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? 
metalc ? metalc19 P MG MG . D MG 201 1_555 Q O2G GNP . D GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc20 P MG MG . D MG 201 1_555 Q O2B GNP . D GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc21 E OG SER 21 E SER 17 1_555 R MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc22 R MG MG . E MG 201 1_555 S O1G GNP . E GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc23 R MG MG . E MG 201 1_555 S O1B GNP . E GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc24 F OG SER 21 F SER 17 1_555 T MG MG . F MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc25 T MG MG . F MG 201 1_555 U O1B GNP . F GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc26 T MG MG . F MG 201 1_555 U O1G GNP . F GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 181 n n 
PG O2G GNP sing 182 n n 
PG O3G GNP sing 183 n n 
PG N3B GNP sing 184 n n 
O2G HOG2 GNP sing 185 n n 
O3G HOG3 GNP sing 186 n n 
N3B PB GNP sing 187 n n 
N3B HNB3 GNP sing 188 n n 
PB O1B GNP doub 189 n n 
PB O2B GNP sing 190 n n 
PB O3A GNP sing 191 n n 
O2B HOB2 GNP sing 192 n n 
O3A PA GNP sing 193 n n 
PA O1A GNP doub 194 n n 
PA O2A GNP sing 195 n n 
PA O5' GNP sing 196 n n 
O2A HOA2 GNP sing 197 n n 
O5' C5' GNP sing 198 n n 
C5' C4' GNP sing 199 n n 
C5' "H5'2" GNP sing 200 n n 
C5' "H5'1" GNP sing 201 n n 
C4' O4' GNP sing 202 n n 
C4' C3' GNP sing 203 n n 
C4' H4' GNP sing 204 n n 
O4' C1' GNP sing 205 n n 
C3' O3' GNP sing 206 n n 
C3' C2' GNP sing 207 n n 
C3' H3' GNP sing 208 n n 
O3' HO3' GNP sing 209 n n 
C2' O2' GNP sing 210 n n 
C2' C1' GNP sing 211 n n 
C2' H2' GNP sing 212 n n 
O2' HO2' GNP sing 213 n n 
C1' N9 GNP sing 214 n n 
C1' H1' GNP sing 215 n n 
N9 C8 GNP sing 216 n y 
N9 C4 GNP sing 217 n y 
C8 N7 GNP doub 218 n y 
C8 H8 GNP sing 219 n n 
N7 C5 GNP sing 220 n y 
C5 C6 GNP sing 221 n y 
C5 C4 GNP doub 222 n y 
C6 O6 GNP doub 223 n n 
C6 N1 GNP sing 224 n y 
N1 C2 GNP sing 225 n y 
N1 HN1 GNP sing 226 n n 
C2 N2 GNP sing 227 n n 
C2 N3 GNP doub 228 n y 
N2 HN21 GNP sing 229 n n 
N2 HN22 GNP sing 230 n n 
N3 C4 GNP sing 231 n y 
#
_atom_sites.entry_id                     6GQW 
_atom_sites.fract_transf_matrix[1][1]    0.015752 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008436 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006389 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 MG A 1 201 202 MG MG . 
H 4 GNP A 1 202 201 GNP GNP . 
I 5 F8T A 1 203 203 F8T Ch1 . 
J 3 MG B 1 201 202 MG MG . 
K 4 GNP B 1 202 201 GNP GNP . 
L 5 F8T B 1 203 203 F8T Ch1 . 
M 3 MG C 1 201 202 MG MG . 
N 4 GNP C 1 202 201 GNP GNP . 
O 5 F8T C 1 203 203 F8T Ch1 . 
P 3 MG D 1 201 202 MG MG . 
Q 4 GNP D 1 202 201 GNP GNP . 
R 3 MG E 1 201 202 MG MG . 
S 4 GNP E 1 202 201 GNP GNP . 
T 3 MG F 1 201 202 MG MG . 
U 4 GNP F 1 202 201 GNP GNP . 
V 5 F8T F 1 203 203 F8T Ch1 . 
W 6 HOH A 1 301 207 HOH HOH . 
W 6 HOH A 2 302 187 HOH HOH . 
W 6 HOH A 3 303 128 HOH HOH . 
W 6 HOH A 4 304 188 HOH HOH . 
W 6 HOH A 5 305 206 HOH HOH . 
W 6 HOH A 6 306 17 HOH HOH . 
W 6 HOH A 7 307 202 HOH HOH . 
W 6 HOH A 8 308 35 HOH HOH . 
W 6 HOH A 9 309 38 HOH HOH . 
W 6 HOH A 10 310 78 HOH HOH . 
W 6 HOH A 11 311 190 HOH HOH . 
W 6 HOH A 12 312 208 HOH HOH . 
X 6 HOH B 1 301 192 HOH HOH . 
X 6 HOH B 2 302 186 HOH HOH . 
X 6 HOH B 3 303 191 HOH HOH . 
X 6 HOH B 4 304 185 HOH HOH . 
X 6 HOH B 5 305 183 HOH HOH . 
X 6 HOH B 6 306 99 HOH HOH . 
Y 6 HOH C 1 301 205 HOH HOH . 
Y 6 HOH C 2 302 74 HOH HOH . 
Y 6 HOH C 3 303 33 HOH HOH . 
Z 6 HOH D 1 301 7 HOH HOH . 
Z 6 HOH D 2 302 26 HOH HOH . 
Z 6 HOH D 3 303 203 HOH HOH . 
Z 6 HOH D 4 304 1 HOH HOH . 
Z 6 HOH D 5 305 182 HOH HOH . 
Z 6 HOH D 6 306 194 HOH HOH . 
Z 6 HOH D 7 307 204 HOH HOH . 
AA 6 HOH E 1 301 193 HOH HOH . 
AA 6 HOH E 2 302 3 HOH HOH . 
BA 6 HOH F 1 301 51 HOH HOH . 
BA 6 HOH F 2 302 184 HOH HOH . 
BA 6 HOH F 3 303 196 HOH HOH . 
BA 6 HOH F 4 304 86 HOH HOH . 
BA 6 HOH F 5 305 14 HOH HOH . 
BA 6 HOH F 6 306 189 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . N 4 76.816 94.134 48.823 1 90.03 ? PG GNP 202 C 1 
HETATM 2 O O1G GNP . . . N 4 76.348 94.387 47.404 1 105.05 ? O1G GNP 202 C 1 
HETATM 3 O O2G GNP . . . N 4 78.073 94.954 48.996 1 98.92 ? O2G GNP 202 C 1 
HETATM 4 O O3G GNP . . . N 4 77.145 92.664 48.958 1 103.71 ? O3G GNP 202 C 1 
HETATM 5 N N3B GNP . . . N 4 75.652 94.522 49.899 1 72.77 ? N3B GNP 202 C 1 
HETATM 6 P PB GNP . . . N 4 74.616 95.749 49.652 1 58.69 ? PB GNP 202 C 1 
HETATM 7 O O1B GNP . . . N 4 73.897 95.516 48.346 1 62.05 ? O1B GNP 202 C 1 
HETATM 8 O O2B GNP . . . N 4 75.318 97.058 49.887 1 50.98 ? O2B GNP 202 C 1 
HETATM 9 O O3A GNP . . . N 4 73.39 95.588 50.667 1 51.45 ? O3A GNP 202 C 1 
HETATM 10 P PA GNP . . . N 4 71.947 94.978 50.339 1 44.66 ? PA GNP 202 C 1 
HETATM 11 O O1A GNP . . . N 4 71.276 95.87 49.354 1 50.37 ? O1A GNP 202 C 1 
HETATM 12 O O2A GNP . . . N 4 72.154 93.532 50.02 1 44.5 ? O2A GNP 202 C 1 
HETATM 13 O O5' GNP . . . N 4 71.196 95.141 51.737 1 48.96 ? O5' GNP 202 C 1 
HETATM 14 C C5' GNP . . . N 4 71.875 94.703 52.94 1 48.02 ? C5' GNP 202 C 1 
HETATM 15 C C4' GNP . . . N 4 70.85 94.285 53.962 1 44.59 ? C4' GNP 202 C 1 
HETATM 16 O O4' GNP . . . N 4 70.414 95.47 54.668 1 43.15 ? O4' GNP 202 C 1 
HETATM 17 C C3' GNP . . . N 4 69.577 93.618 53.42 1 42.74 ? C3' GNP 202 C 1 
HETATM 18 O O3' GNP . . . N 4 69.12 92.592 54.286 1 39.68 ? O3' GNP 202 C 1 
HETATM 19 C C2' GNP . . . N 4 68.546 94.748 53.397 1 42.37 ? C2' GNP 202 C 1 
HETATM 20 O O2' GNP . . . N 4 67.24 94.3 53.699 1 41.86 ? O2' GNP 202 C 1 
HETATM 21 C C1' GNP . . . N 4 69.03 95.65 54.521 1 43.35 ? C1' GNP 202 C 1 
HETATM 22 N N9 GNP . . . N 4 68.814 97.062 54.271 1 47.12 ? N9 GNP 202 C 1 
HETATM 23 C C8 GNP . . . N 4 69.352 97.828 53.272 1 48.79 ? C8 GNP 202 C 1 
HETATM 24 N N7 GNP . . . N 4 68.982 99.085 53.336 1 53.84 ? N7 GNP 202 C 1 
HETATM 25 C C5 GNP . . . N 4 68.158 99.144 54.455 1 52.31 ? C5 GNP 202 C 1 
HETATM 26 C C6 GNP . . . N 4 67.465 100.237 55.025 1 51.11 ? C6 GNP 202 C 1 
HETATM 27 O O6 GNP . . . N 4 67.458 101.419 54.656 1 52.99 ? O6 GNP 202 C 1 
HETATM 28 N N1 GNP . . . N 4 66.752 99.847 56.156 1 52.36 ? N1 GNP 202 C 1 
HETATM 29 C C2 GNP . . . N 4 66.697 98.572 56.67 1 55.05 ? C2 GNP 202 C 1 
HETATM 30 N N2 GNP . . . N 4 65.945 98.385 57.767 1 59.12 ? N2 GNP 202 C 1 
HETATM 31 N N3 GNP . . . N 4 67.342 97.542 56.134 1 50.6 ? N3 GNP 202 C 1 
HETATM 32 C C4 GNP . . . N 4 68.05 97.903 55.038 1 50.55 ? C4 GNP 202 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#