data_6GR2
#
_model_server_result.job_id            lD2l948lK_rPoJ6wYyYrHg 
_model_server_result.datetime_utc      '2024-11-16 19:44:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gr2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":401}' 
#
_entry.id    6GR2 
#
_exptl.entry_id    6GR2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-galactopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         113.85 
_cell.angle_beta          102.26 
_cell.angle_gamma         101.29 
_cell.entry_id            6GR2 
_cell.length_a            78.217 
_cell.length_b            110.32 
_cell.length_c            118.234 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GR2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,I,J,V,W,X,DA,IA 1 1 
B,K,L,M,N,EA 2 1 
C,O,P,Q,FA 2 2 
D,G,R,S,Y,Z,GA,JA 3 1 
E,H,T,U,AA,BA,CA,HA,KA 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -78.217 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 O N N 
? 2 R N N 
? 2 T N N 
? 2 V N N 
? 2 Y N N 
? 2 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 398 A CYS 391 1_555 F SG CYS 398 F CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 398 B CYS 391 1_555 C SG CYS 398 C CYS 391 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 D SG CYS 398 D CYS 391 1_555 G SG CYS 398 G CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 E SG CYS 398 E CYS 391 1_555 H SG CYS 398 H CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                GAL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-galactopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-galactose;D-galactose;galactose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GAL sing 127 n n 
C1 O1 GAL sing 128 n n 
C1 O5 GAL sing 129 n n 
C1 H1 GAL sing 130 n n 
C2 C3 GAL sing 131 n n 
C2 O2 GAL sing 132 n n 
C2 H2 GAL sing 133 n n 
C3 C4 GAL sing 134 n n 
C3 O3 GAL sing 135 n n 
C3 H3 GAL sing 136 n n 
C4 C5 GAL sing 137 n n 
C4 O4 GAL sing 138 n n 
C4 H4 GAL sing 139 n n 
C5 C6 GAL sing 140 n n 
C5 O5 GAL sing 141 n n 
C5 H5 GAL sing 142 n n 
C6 O6 GAL sing 143 n n 
C6 H61 GAL sing 144 n n 
C6 H62 GAL sing 145 n n 
O1 HO1 GAL sing 146 n n 
O2 HO2 GAL sing 147 n n 
O3 HO3 GAL sing 148 n n 
O4 HO4 GAL sing 149 n n 
O6 HO6 GAL sing 150 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
GAL DGalpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
GAL b-D-galactopyranose 'COMMON NAME' GMML 1 
GAL b-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
GAL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6GR2 
_atom_sites.fract_transf_matrix[1][1]    0.012785 
_atom_sites.fract_transf_matrix[1][2]    0.002552 
_atom_sites.fract_transf_matrix[1][3]    0.004481 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009243 
_atom_sites.fract_transf_matrix[2][3]    0.004859 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009778 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GAL A 1 401 393 GAL GAL . 
J 3 ADP A 1 402 401 ADP ADP . 
K 2 GAL B 1 401 393 GAL GAL . 
L 3 ADP B 1 402 401 ADP ADP . 
M 4 SO4 B 1 403 501 SO4 SO4 . 
N 4 SO4 B 1 404 601 SO4 SO4 . 
O 2 GAL C 1 401 393 GAL GAL . 
P 3 ADP C 1 402 401 ADP ADP . 
Q 4 SO4 C 1 403 501 SO4 SO4 . 
R 2 GAL D 1 401 393 GAL GAL . 
S 3 ADP D 1 402 401 ADP ADP . 
T 2 GAL E 1 401 393 GAL GAL . 
U 3 ADP E 1 402 401 ADP ADP . 
V 2 GAL F 1 401 393 GAL GAL . 
W 3 ADP F 1 402 401 ADP ADP . 
X 4 SO4 F 1 403 501 SO4 SO4 . 
Y 2 GAL G 1 401 393 GAL GAL . 
Z 3 ADP G 1 402 401 ADP ADP . 
AA 2 GAL H 1 401 393 GAL GAL . 
BA 3 ADP H 1 402 401 ADP ADP . 
CA 4 SO4 H 1 403 501 SO4 SO4 . 
DA 5 HOH A 1 501 13 HOH HOH . 
DA 5 HOH A 2 502 30 HOH HOH . 
DA 5 HOH A 3 503 24 HOH HOH . 
DA 5 HOH A 4 504 28 HOH HOH . 
DA 5 HOH A 5 505 29 HOH HOH . 
DA 5 HOH A 6 506 20 HOH HOH . 
DA 5 HOH A 7 507 23 HOH HOH . 
DA 5 HOH A 8 508 26 HOH HOH . 
DA 5 HOH A 9 509 27 HOH HOH . 
DA 5 HOH A 10 510 115 HOH HOH . 
EA 5 HOH B 1 501 40 HOH HOH . 
EA 5 HOH B 2 502 44 HOH HOH . 
EA 5 HOH B 3 503 33 HOH HOH . 
EA 5 HOH B 4 504 35 HOH HOH . 
EA 5 HOH B 5 505 14 HOH HOH . 
EA 5 HOH B 6 506 17 HOH HOH . 
EA 5 HOH B 7 507 37 HOH HOH . 
EA 5 HOH B 8 508 41 HOH HOH . 
EA 5 HOH B 9 509 34 HOH HOH . 
EA 5 HOH B 10 510 36 HOH HOH . 
EA 5 HOH B 11 511 16 HOH HOH . 
EA 5 HOH B 12 512 18 HOH HOH . 
EA 5 HOH B 13 513 38 HOH HOH . 
EA 5 HOH B 14 514 32 HOH HOH . 
EA 5 HOH B 15 515 31 HOH HOH . 
EA 5 HOH B 16 516 42 HOH HOH . 
EA 5 HOH B 17 517 43 HOH HOH . 
FA 5 HOH C 1 501 48 HOH HOH . 
FA 5 HOH C 2 502 52 HOH HOH . 
FA 5 HOH C 3 503 110 HOH HOH . 
FA 5 HOH C 4 504 50 HOH HOH . 
FA 5 HOH C 5 505 12 HOH HOH . 
FA 5 HOH C 6 506 47 HOH HOH . 
FA 5 HOH C 7 507 49 HOH HOH . 
FA 5 HOH C 8 508 54 HOH HOH . 
FA 5 HOH C 9 509 51 HOH HOH . 
FA 5 HOH C 10 510 45 HOH HOH . 
GA 5 HOH D 1 501 55 HOH HOH . 
GA 5 HOH D 2 502 21 HOH HOH . 
GA 5 HOH D 3 503 53 HOH HOH . 
GA 5 HOH D 4 504 62 HOH HOH . 
GA 5 HOH D 5 505 59 HOH HOH . 
GA 5 HOH D 6 506 57 HOH HOH . 
GA 5 HOH D 7 507 61 HOH HOH . 
GA 5 HOH D 8 508 58 HOH HOH . 
GA 5 HOH D 9 509 2 HOH HOH . 
GA 5 HOH D 10 510 15 HOH HOH . 
GA 5 HOH D 11 511 60 HOH HOH . 
HA 5 HOH E 1 501 106 HOH HOH . 
HA 5 HOH E 2 502 71 HOH HOH . 
HA 5 HOH E 3 503 10 HOH HOH . 
HA 5 HOH E 4 504 74 HOH HOH . 
HA 5 HOH E 5 505 66 HOH HOH . 
HA 5 HOH E 6 506 67 HOH HOH . 
HA 5 HOH E 7 507 65 HOH HOH . 
HA 5 HOH E 8 508 73 HOH HOH . 
HA 5 HOH E 9 509 64 HOH HOH . 
HA 5 HOH E 10 510 69 HOH HOH . 
HA 5 HOH E 11 511 63 HOH HOH . 
HA 5 HOH E 12 512 70 HOH HOH . 
HA 5 HOH E 13 513 75 HOH HOH . 
HA 5 HOH E 14 514 72 HOH HOH . 
IA 5 HOH F 1 501 87 HOH HOH . 
IA 5 HOH F 2 502 83 HOH HOH . 
IA 5 HOH F 3 503 82 HOH HOH . 
IA 5 HOH F 4 504 19 HOH HOH . 
IA 5 HOH F 5 505 84 HOH HOH . 
IA 5 HOH F 6 506 76 HOH HOH . 
IA 5 HOH F 7 507 88 HOH HOH . 
IA 5 HOH F 8 508 85 HOH HOH . 
IA 5 HOH F 9 509 25 HOH HOH . 
IA 5 HOH F 10 510 91 HOH HOH . 
IA 5 HOH F 11 511 81 HOH HOH . 
IA 5 HOH F 12 512 68 HOH HOH . 
IA 5 HOH F 13 513 79 HOH HOH . 
IA 5 HOH F 14 514 4 HOH HOH . 
IA 5 HOH F 15 515 78 HOH HOH . 
IA 5 HOH F 16 516 92 HOH HOH . 
IA 5 HOH F 17 517 86 HOH HOH . 
IA 5 HOH F 18 518 89 HOH HOH . 
IA 5 HOH F 19 519 80 HOH HOH . 
IA 5 HOH F 20 520 77 HOH HOH . 
JA 5 HOH G 1 501 93 HOH HOH . 
JA 5 HOH G 2 502 97 HOH HOH . 
JA 5 HOH G 3 503 94 HOH HOH . 
JA 5 HOH G 4 504 6 HOH HOH . 
JA 5 HOH G 5 505 1 HOH HOH . 
JA 5 HOH G 6 506 95 HOH HOH . 
JA 5 HOH G 7 507 98 HOH HOH . 
JA 5 HOH G 8 508 99 HOH HOH . 
JA 5 HOH G 9 509 96 HOH HOH . 
KA 5 HOH H 1 501 103 HOH HOH . 
KA 5 HOH H 2 502 109 HOH HOH . 
KA 5 HOH H 3 503 113 HOH HOH . 
KA 5 HOH H 4 504 108 HOH HOH . 
KA 5 HOH H 5 505 104 HOH HOH . 
KA 5 HOH H 6 506 114 HOH HOH . 
KA 5 HOH H 7 507 8 HOH HOH . 
KA 5 HOH H 8 508 101 HOH HOH . 
KA 5 HOH H 9 509 105 HOH HOH . 
KA 5 HOH H 10 510 112 HOH HOH . 
KA 5 HOH H 11 511 9 HOH HOH . 
KA 5 HOH H 12 512 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GAL . . . I 2 -42.567 5.445 49.031 1 48.25 ? C1 GAL 401 A 1 
HETATM 2 C C2 GAL . . . I 2 -43.582 4.533 49.714 1 47.65 ? C2 GAL 401 A 1 
HETATM 3 C C3 GAL . . . I 2 -44.634 5.394 50.407 1 47.38 ? C3 GAL 401 A 1 
HETATM 4 C C4 GAL . . . I 2 -43.947 6.362 51.418 1 45.88 ? C4 GAL 401 A 1 
HETATM 5 C C5 GAL . . . I 2 -42.719 7.042 50.765 1 46.85 ? C5 GAL 401 A 1 
HETATM 6 C C6 GAL . . . I 2 -41.798 7.764 51.747 1 48.43 ? C6 GAL 401 A 1 
HETATM 7 O O1 GAL . . . I 2 -41.65 4.727 48.243 1 49.4 ? O1 GAL 401 A 1 
HETATM 8 O O2 GAL . . . I 2 -44.265 3.702 48.789 1 47.02 ? O2 GAL 401 A 1 
HETATM 9 O O3 GAL . . . I 2 -45.571 4.601 51.13 1 47.52 ? O3 GAL 401 A 1 
HETATM 10 O O4 GAL . . . I 2 -43.554 5.688 52.606 1 45.57 ? O4 GAL 401 A 1 
HETATM 11 O O5 GAL . . . I 2 -41.877 6.11 50.051 1 45.88 ? O5 GAL 401 A 1 
HETATM 12 O O6 GAL . . . I 2 -42.18 9.12 51.906 1 51.55 ? O6 GAL 401 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    62 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#