data_6GRY
#
_model_server_result.job_id            V_hF0EzLV1mkNrhZhzK43g 
_model_server_result.datetime_utc      '2024-11-05 12:45:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gry 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":505}' 
#
_entry.id    6GRY 
#
_exptl.entry_id    6GRY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GRY 
_cell.length_a            54.579 
_cell.length_b            54.579 
_cell.length_c            284.112 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GRY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     6GRY 
_atom_sites.fract_transf_matrix[1][1]    0.018322 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018322 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00352 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PG4 A 1 501 1 PG4 PG4 . 
C 2 PG4 A 1 502 2 PG4 PG4 . 
D 3 EDO A 1 503 1 EDO EDO . 
E 3 EDO A 1 504 2 EDO EDO . 
F 3 EDO A 1 505 4 EDO EDO . 
G 3 EDO A 1 506 5 EDO EDO . 
H 3 EDO A 1 507 8 EDO EDO . 
I 3 EDO A 1 508 9 EDO EDO . 
J 3 EDO A 1 509 10 EDO EDO . 
K 3 EDO A 1 510 11 EDO EDO . 
L 3 EDO A 1 511 12 EDO EDO . 
M 3 EDO A 1 512 13 EDO EDO . 
N 3 EDO A 1 513 14 EDO EDO . 
O 3 EDO A 1 514 15 EDO EDO . 
P 3 EDO A 1 515 16 EDO EDO . 
Q 4 PEG A 1 516 1 PEG PEG . 
R 4 PEG A 1 517 2 PEG PEG . 
S 4 PEG A 1 518 3 PEG PEG . 
T 4 PEG A 1 519 4 PEG PEG . 
U 4 PEG A 1 520 5 PEG PEG . 
V 4 PEG A 1 521 7 PEG PEG . 
W 5 PGE A 1 522 1 PGE PGE . 
X 6 HOH A 1 601 71 HOH HOH . 
X 6 HOH A 2 602 133 HOH HOH . 
X 6 HOH A 3 603 181 HOH HOH . 
X 6 HOH A 4 604 89 HOH HOH . 
X 6 HOH A 5 605 18 HOH HOH . 
X 6 HOH A 6 606 178 HOH HOH . 
X 6 HOH A 7 607 119 HOH HOH . 
X 6 HOH A 8 608 126 HOH HOH . 
X 6 HOH A 9 609 104 HOH HOH . 
X 6 HOH A 10 610 188 HOH HOH . 
X 6 HOH A 11 611 68 HOH HOH . 
X 6 HOH A 12 612 189 HOH HOH . 
X 6 HOH A 13 613 98 HOH HOH . 
X 6 HOH A 14 614 79 HOH HOH . 
X 6 HOH A 15 615 97 HOH HOH . 
X 6 HOH A 16 616 101 HOH HOH . 
X 6 HOH A 17 617 148 HOH HOH . 
X 6 HOH A 18 618 118 HOH HOH . 
X 6 HOH A 19 619 7 HOH HOH . 
X 6 HOH A 20 620 154 HOH HOH . 
X 6 HOH A 21 621 155 HOH HOH . 
X 6 HOH A 22 622 108 HOH HOH . 
X 6 HOH A 23 623 167 HOH HOH . 
X 6 HOH A 24 624 21 HOH HOH . 
X 6 HOH A 25 625 28 HOH HOH . 
X 6 HOH A 26 626 137 HOH HOH . 
X 6 HOH A 27 627 200 HOH HOH . 
X 6 HOH A 28 628 103 HOH HOH . 
X 6 HOH A 29 629 179 HOH HOH . 
X 6 HOH A 30 630 11 HOH HOH . 
X 6 HOH A 31 631 146 HOH HOH . 
X 6 HOH A 32 632 8 HOH HOH . 
X 6 HOH A 33 633 180 HOH HOH . 
X 6 HOH A 34 634 202 HOH HOH . 
X 6 HOH A 35 635 184 HOH HOH . 
X 6 HOH A 36 636 74 HOH HOH . 
X 6 HOH A 37 637 33 HOH HOH . 
X 6 HOH A 38 638 156 HOH HOH . 
X 6 HOH A 39 639 13 HOH HOH . 
X 6 HOH A 40 640 194 HOH HOH . 
X 6 HOH A 41 641 80 HOH HOH . 
X 6 HOH A 42 642 26 HOH HOH . 
X 6 HOH A 43 643 25 HOH HOH . 
X 6 HOH A 44 644 84 HOH HOH . 
X 6 HOH A 45 645 99 HOH HOH . 
X 6 HOH A 46 646 115 HOH HOH . 
X 6 HOH A 47 647 37 HOH HOH . 
X 6 HOH A 48 648 69 HOH HOH . 
X 6 HOH A 49 649 209 HOH HOH . 
X 6 HOH A 50 650 5 HOH HOH . 
X 6 HOH A 51 651 67 HOH HOH . 
X 6 HOH A 52 652 59 HOH HOH . 
X 6 HOH A 53 653 34 HOH HOH . 
X 6 HOH A 54 654 48 HOH HOH . 
X 6 HOH A 55 655 4 HOH HOH . 
X 6 HOH A 56 656 24 HOH HOH . 
X 6 HOH A 57 657 113 HOH HOH . 
X 6 HOH A 58 658 206 HOH HOH . 
X 6 HOH A 59 659 39 HOH HOH . 
X 6 HOH A 60 660 49 HOH HOH . 
X 6 HOH A 61 661 35 HOH HOH . 
X 6 HOH A 62 662 56 HOH HOH . 
X 6 HOH A 63 663 31 HOH HOH . 
X 6 HOH A 64 664 75 HOH HOH . 
X 6 HOH A 65 665 95 HOH HOH . 
X 6 HOH A 66 666 50 HOH HOH . 
X 6 HOH A 67 667 38 HOH HOH . 
X 6 HOH A 68 668 10 HOH HOH . 
X 6 HOH A 69 669 55 HOH HOH . 
X 6 HOH A 70 670 16 HOH HOH . 
X 6 HOH A 71 671 63 HOH HOH . 
X 6 HOH A 72 672 81 HOH HOH . 
X 6 HOH A 73 673 15 HOH HOH . 
X 6 HOH A 74 674 100 HOH HOH . 
X 6 HOH A 75 675 1 HOH HOH . 
X 6 HOH A 76 676 132 HOH HOH . 
X 6 HOH A 77 677 145 HOH HOH . 
X 6 HOH A 78 678 46 HOH HOH . 
X 6 HOH A 79 679 9 HOH HOH . 
X 6 HOH A 80 680 201 HOH HOH . 
X 6 HOH A 81 681 128 HOH HOH . 
X 6 HOH A 82 682 130 HOH HOH . 
X 6 HOH A 83 683 61 HOH HOH . 
X 6 HOH A 84 684 22 HOH HOH . 
X 6 HOH A 85 685 134 HOH HOH . 
X 6 HOH A 86 686 29 HOH HOH . 
X 6 HOH A 87 687 195 HOH HOH . 
X 6 HOH A 88 688 45 HOH HOH . 
X 6 HOH A 89 689 2 HOH HOH . 
X 6 HOH A 90 690 20 HOH HOH . 
X 6 HOH A 91 691 27 HOH HOH . 
X 6 HOH A 92 692 23 HOH HOH . 
X 6 HOH A 93 693 47 HOH HOH . 
X 6 HOH A 94 694 141 HOH HOH . 
X 6 HOH A 95 695 117 HOH HOH . 
X 6 HOH A 96 696 107 HOH HOH . 
X 6 HOH A 97 697 43 HOH HOH . 
X 6 HOH A 98 698 105 HOH HOH . 
X 6 HOH A 99 699 144 HOH HOH . 
X 6 HOH A 100 700 191 HOH HOH . 
X 6 HOH A 101 701 14 HOH HOH . 
X 6 HOH A 102 702 90 HOH HOH . 
X 6 HOH A 103 703 73 HOH HOH . 
X 6 HOH A 104 704 40 HOH HOH . 
X 6 HOH A 105 705 102 HOH HOH . 
X 6 HOH A 106 706 122 HOH HOH . 
X 6 HOH A 107 707 196 HOH HOH . 
X 6 HOH A 108 708 111 HOH HOH . 
X 6 HOH A 109 709 57 HOH HOH . 
X 6 HOH A 110 710 3 HOH HOH . 
X 6 HOH A 111 711 60 HOH HOH . 
X 6 HOH A 112 712 53 HOH HOH . 
X 6 HOH A 113 713 182 HOH HOH . 
X 6 HOH A 114 714 54 HOH HOH . 
X 6 HOH A 115 715 36 HOH HOH . 
X 6 HOH A 116 716 19 HOH HOH . 
X 6 HOH A 117 717 6 HOH HOH . 
X 6 HOH A 118 718 121 HOH HOH . 
X 6 HOH A 119 719 64 HOH HOH . 
X 6 HOH A 120 720 217 HOH HOH . 
X 6 HOH A 121 721 82 HOH HOH . 
X 6 HOH A 122 722 208 HOH HOH . 
X 6 HOH A 123 723 94 HOH HOH . 
X 6 HOH A 124 724 72 HOH HOH . 
X 6 HOH A 125 725 177 HOH HOH . 
X 6 HOH A 126 726 76 HOH HOH . 
X 6 HOH A 127 727 87 HOH HOH . 
X 6 HOH A 128 728 85 HOH HOH . 
X 6 HOH A 129 729 96 HOH HOH . 
X 6 HOH A 130 730 41 HOH HOH . 
X 6 HOH A 131 731 142 HOH HOH . 
X 6 HOH A 132 732 17 HOH HOH . 
X 6 HOH A 133 733 65 HOH HOH . 
X 6 HOH A 134 734 91 HOH HOH . 
X 6 HOH A 135 735 92 HOH HOH . 
X 6 HOH A 136 736 158 HOH HOH . 
X 6 HOH A 137 737 109 HOH HOH . 
X 6 HOH A 138 738 138 HOH HOH . 
X 6 HOH A 139 739 150 HOH HOH . 
X 6 HOH A 140 740 159 HOH HOH . 
X 6 HOH A 141 741 66 HOH HOH . 
X 6 HOH A 142 742 51 HOH HOH . 
X 6 HOH A 143 743 211 HOH HOH . 
X 6 HOH A 144 744 183 HOH HOH . 
X 6 HOH A 145 745 165 HOH HOH . 
X 6 HOH A 146 746 136 HOH HOH . 
X 6 HOH A 147 747 143 HOH HOH . 
X 6 HOH A 148 748 12 HOH HOH . 
X 6 HOH A 149 749 169 HOH HOH . 
X 6 HOH A 150 750 131 HOH HOH . 
X 6 HOH A 151 751 186 HOH HOH . 
X 6 HOH A 152 752 83 HOH HOH . 
X 6 HOH A 153 753 151 HOH HOH . 
X 6 HOH A 154 754 106 HOH HOH . 
X 6 HOH A 155 755 147 HOH HOH . 
X 6 HOH A 156 756 203 HOH HOH . 
X 6 HOH A 157 757 88 HOH HOH . 
X 6 HOH A 158 758 219 HOH HOH . 
X 6 HOH A 159 759 163 HOH HOH . 
X 6 HOH A 160 760 170 HOH HOH . 
X 6 HOH A 161 761 120 HOH HOH . 
X 6 HOH A 162 762 123 HOH HOH . 
X 6 HOH A 163 763 215 HOH HOH . 
X 6 HOH A 164 764 212 HOH HOH . 
X 6 HOH A 165 765 205 HOH HOH . 
X 6 HOH A 166 766 32 HOH HOH . 
X 6 HOH A 167 767 77 HOH HOH . 
X 6 HOH A 168 768 135 HOH HOH . 
X 6 HOH A 169 769 152 HOH HOH . 
X 6 HOH A 170 770 187 HOH HOH . 
X 6 HOH A 171 771 222 HOH HOH . 
X 6 HOH A 172 772 116 HOH HOH . 
X 6 HOH A 173 773 210 HOH HOH . 
X 6 HOH A 174 774 164 HOH HOH . 
X 6 HOH A 175 775 172 HOH HOH . 
X 6 HOH A 176 776 125 HOH HOH . 
X 6 HOH A 177 777 157 HOH HOH . 
X 6 HOH A 178 778 220 HOH HOH . 
X 6 HOH A 179 779 62 HOH HOH . 
X 6 HOH A 180 780 168 HOH HOH . 
X 6 HOH A 181 781 174 HOH HOH . 
X 6 HOH A 182 782 192 HOH HOH . 
X 6 HOH A 183 783 185 HOH HOH . 
X 6 HOH A 184 784 112 HOH HOH . 
X 6 HOH A 185 785 176 HOH HOH . 
X 6 HOH A 186 786 110 HOH HOH . 
X 6 HOH A 187 787 149 HOH HOH . 
X 6 HOH A 188 788 30 HOH HOH . 
X 6 HOH A 189 789 218 HOH HOH . 
X 6 HOH A 190 790 190 HOH HOH . 
X 6 HOH A 191 791 114 HOH HOH . 
X 6 HOH A 192 792 44 HOH HOH . 
X 6 HOH A 193 793 153 HOH HOH . 
X 6 HOH A 194 794 166 HOH HOH . 
X 6 HOH A 195 795 58 HOH HOH . 
X 6 HOH A 196 796 161 HOH HOH . 
X 6 HOH A 197 797 204 HOH HOH . 
X 6 HOH A 198 798 221 HOH HOH . 
X 6 HOH A 199 799 173 HOH HOH . 
X 6 HOH A 200 800 139 HOH HOH . 
X 6 HOH A 201 801 193 HOH HOH . 
X 6 HOH A 202 802 78 HOH HOH . 
X 6 HOH A 203 803 175 HOH HOH . 
X 6 HOH A 204 804 124 HOH HOH . 
X 6 HOH A 205 805 70 HOH HOH . 
X 6 HOH A 206 806 129 HOH HOH . 
X 6 HOH A 207 807 198 HOH HOH . 
X 6 HOH A 208 808 127 HOH HOH . 
X 6 HOH A 209 809 214 HOH HOH . 
X 6 HOH A 210 810 197 HOH HOH . 
X 6 HOH A 211 811 140 HOH HOH . 
X 6 HOH A 212 812 86 HOH HOH . 
X 6 HOH A 213 813 52 HOH HOH . 
X 6 HOH A 214 814 93 HOH HOH . 
X 6 HOH A 215 815 199 HOH HOH . 
X 6 HOH A 216 816 162 HOH HOH . 
X 6 HOH A 217 817 171 HOH HOH . 
X 6 HOH A 218 818 42 HOH HOH . 
X 6 HOH A 219 819 216 HOH HOH . 
X 6 HOH A 220 820 160 HOH HOH . 
X 6 HOH A 221 821 207 HOH HOH . 
X 6 HOH A 222 822 213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 4.731 14.779 144.675 1 62.29 ? C1 EDO 505 A 1 
HETATM 2 O O1 EDO . . . F 3 3.9 13.98 145.524 1 52.87 ? O1 EDO 505 A 1 
HETATM 3 C C2 EDO . . . F 3 4.154 16.181 144.518 1 65.93 ? C2 EDO 505 A 1 
HETATM 4 O O2 EDO . . . F 3 5.173 17.11 144.137 1 49.42 ? O2 EDO 505 A 1 
HETATM 5 H H11 EDO . . . F 3 5.734 14.842 145.101 1 74.78 ? H11 EDO 505 A 1 
HETATM 6 H H12 EDO . . . F 3 4.812 14.306 143.694 1 74.78 ? H12 EDO 505 A 1 
HETATM 7 H HO1 EDO . . . F 3 4.282 13.096 145.611 1 63.48 ? HO1 EDO 505 A 1 
HETATM 8 H H21 EDO . . . F 3 3.369 16.17 143.759 1 79.16 ? H21 EDO 505 A 1 
HETATM 9 H H22 EDO . . . F 3 3.706 16.499 145.461 1 79.16 ? H22 EDO 505 A 1 
HETATM 10 H HO2 EDO . . . F 3 4.787 17.991 144.043 1 59.34 ? HO2 EDO 505 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           10 
#