data_6GS4 # _model_server_result.job_id 9okrejgIlcM141TPDhdKPg _model_server_result.datetime_utc '2024-11-04 22:44:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gs4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6GS4 # _exptl.entry_id 6GS4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.362 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{S})-2-[(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)methoxy]-3-oxidanyl-propyl] (2~{S})-2-azanyl-3-methyl-butanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GS4 _cell.length_a 54.94 _cell.length_b 120.19 _cell.length_c 163.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GS4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 22 _struct_conn.ptnr1_auth_asym_id H _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 96 _struct_conn.ptnr2_auth_asym_id H _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 96 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.034 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H22 N6 O5' _chem_comp.formula_weight 354.362 _chem_comp.id F9E _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{S})-2-[(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)methoxy]-3-oxidanyl-propyl] (2~{S})-2-azanyl-3-methyl-butanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 C02 F9E sing 83 n n O06 C05 F9E doub 84 n n C04 C05 F9E sing 85 n n C04 C02 F9E sing 86 n n C04 N25 F9E sing 87 n n C05 O07 F9E sing 88 n n C02 C01 F9E sing 89 n n O07 C08 F9E sing 90 n n C08 C09 F9E sing 91 n n C09 O12 F9E sing 92 n n C09 C10 F9E sing 93 n n O12 C13 F9E sing 94 n n C10 O11 F9E sing 95 n n C13 N14 F9E sing 96 n n C15 N14 F9E sing 97 n y C15 N16 F9E doub 98 n y N14 C18 F9E sing 99 n y N16 C17 F9E sing 100 n y C18 C17 F9E doub 101 n y C18 N19 F9E sing 102 n n C17 C22 F9E sing 103 n n N19 C20 F9E sing 104 n n C20 N24 F9E sing 105 n n C20 N21 F9E doub 106 n n C22 O23 F9E doub 107 n n C22 N21 F9E sing 108 n n C10 H1 F9E sing 109 n n C10 H2 F9E sing 110 n n C13 H3 F9E sing 111 n n C13 H4 F9E sing 112 n n C15 H5 F9E sing 113 n n C01 H6 F9E sing 114 n n C01 H7 F9E sing 115 n n C01 H8 F9E sing 116 n n C02 H9 F9E sing 117 n n C03 H10 F9E sing 118 n n C03 H11 F9E sing 119 n n C03 H12 F9E sing 120 n n C04 H13 F9E sing 121 n n C08 H14 F9E sing 122 n n C08 H15 F9E sing 123 n n C09 H16 F9E sing 124 n n N19 H17 F9E sing 125 n n N24 H18 F9E sing 126 n n N24 H19 F9E sing 127 n n N25 H20 F9E sing 128 n n N25 H21 F9E sing 129 n n O11 H23 F9E sing 130 n n # _atom_sites.entry_id 6GS4 _atom_sites.fract_transf_matrix[1][1] 0.018202 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 F9E A 1 601 1 F9E LIG . D 4 LMT A 1 602 2 LMT LMT . E 5 HOH A 1 701 4 HOH HOH . E 5 HOH A 2 702 2 HOH HOH . E 5 HOH A 3 703 3 HOH HOH . E 5 HOH A 4 704 1 HOH HOH . F 5 HOH H 1 201 5 HOH HOH . F 5 HOH H 2 202 7 HOH HOH . F 5 HOH H 3 203 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 F9E . . . C 3 -12.335 -12.074 29.725 1 135.58 ? C10 F9E 601 A 1 HETATM 2 C C13 F9E . . . C 3 -14.54 -10.531 30.796 1 133.29 ? C13 F9E 601 A 1 HETATM 3 C C15 F9E . . . C 3 -15.216 -12.721 31.785 1 129.91 ? C15 F9E 601 A 1 HETATM 4 C C17 F9E . . . C 3 -15.437 -12.167 33.902 1 129.1 ? C17 F9E 601 A 1 HETATM 5 C C20 F9E . . . C 3 -15.094 -9.663 35.359 1 125.97 ? C20 F9E 601 A 1 HETATM 6 C C22 F9E . . . C 3 -15.67 -12.084 35.413 1 129.05 ? C22 F9E 601 A 1 HETATM 7 C C01 F9E . . . C 3 -16.993 -11.285 26.646 1 110.75 ? C01 F9E 601 A 1 HETATM 8 C C02 F9E . . . C 3 -16.999 -12.169 25.379 1 110.4 ? C02 F9E 601 A 1 HETATM 9 C C03 F9E . . . C 3 -17.505 -11.365 24.148 1 107.29 ? C03 F9E 601 A 1 HETATM 10 C C04 F9E . . . C 3 -15.65 -12.92 25.128 1 113.27 ? C04 F9E 601 A 1 HETATM 11 C C05 F9E . . . C 3 -14.377 -12.028 25.273 1 120.67 ? C05 F9E 601 A 1 HETATM 12 C C08 F9E . . . C 3 -13.674 -12.221 27.562 1 132.94 ? C08 F9E 601 A 1 HETATM 13 C C09 F9E . . . C 3 -13.424 -11.394 28.852 1 134.39 ? C09 F9E 601 A 1 HETATM 14 C C18 F9E . . . C 3 -15.06 -11.05 33.202 1 129.86 ? C18 F9E 601 A 1 HETATM 15 N N14 F9E . . . C 3 -14.926 -11.407 31.909 1 130.88 ? N14 F9E 601 A 1 HETATM 16 N N16 F9E . . . C 3 -15.533 -13.193 33.025 1 129.2 ? N16 F9E 601 A 1 HETATM 17 N N19 F9E . . . C 3 -14.874 -9.748 33.911 1 129.27 ? N19 F9E 601 A 1 HETATM 18 N N21 F9E . . . C 3 -15.492 -10.839 36.098 1 125.39 ? N21 F9E 601 A 1 HETATM 19 N N24 F9E . . . C 3 -14.911 -8.388 36.048 1 126.36 ? N24 F9E 601 A 1 HETATM 20 N N25 F9E . . . C 3 -15.583 -14.08 26.03 1 106.03 ? N25 F9E 601 A 1 HETATM 21 O O06 F9E . . . C 3 -13.656 -11.886 24.337 1 117.9 ? O06 F9E 601 A 1 HETATM 22 O O07 F9E . . . C 3 -14.043 -11.367 26.486 1 125.95 ? O07 F9E 601 A 1 HETATM 23 O O11 F9E . . . C 3 -11.528 -11.079 30.311 1 135.97 ? O11 F9E 601 A 1 HETATM 24 O O12 F9E . . . C 3 -14.625 -11.321 29.618 1 133.44 ? O12 F9E 601 A 1 HETATM 25 O O23 F9E . . . C 3 -15.995 -13.05 36.011 1 131.64 ? O23 F9E 601 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #