data_6GSD # _model_server_result.job_id 6nPXDF1VX0P2y-KpPd1ydw _model_server_result.datetime_utc '2024-11-22 04:40:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6GSD # _exptl.entry_id 6GSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.462 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROGESTERONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GSD _cell.length_a 78.839 _cell.length_b 78.839 _cell.length_c 134.809 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id STR _chem_comp.mon_nstd_flag . _chem_comp.name PROGESTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STR sing 365 n n C1 C10 STR sing 366 n n C1 H11 STR sing 367 n n C1 H12 STR sing 368 n n C2 C3 STR sing 369 n n C2 H21 STR sing 370 n n C2 H22 STR sing 371 n n C3 O3 STR doub 372 n n C3 C4 STR sing 373 n n C4 C5 STR doub 374 n n C4 H4 STR sing 375 n n C5 C6 STR sing 376 n n C5 C10 STR sing 377 n n C6 C7 STR sing 378 n n C6 H61 STR sing 379 n n C6 H62 STR sing 380 n n C7 C8 STR sing 381 n n C7 H71 STR sing 382 n n C7 H72 STR sing 383 n n C8 C9 STR sing 384 n n C8 C14 STR sing 385 n n C8 H8 STR sing 386 n n C9 C10 STR sing 387 n n C9 C11 STR sing 388 n n C9 H9 STR sing 389 n n C10 C19 STR sing 390 n n C11 C12 STR sing 391 n n C11 H111 STR sing 392 n n C11 H112 STR sing 393 n n C12 C13 STR sing 394 n n C12 H121 STR sing 395 n n C12 H122 STR sing 396 n n C13 C14 STR sing 397 n n C13 C17 STR sing 398 n n C13 C18 STR sing 399 n n C14 C15 STR sing 400 n n C14 H14 STR sing 401 n n C15 C16 STR sing 402 n n C15 H151 STR sing 403 n n C15 H152 STR sing 404 n n C16 C17 STR sing 405 n n C16 H161 STR sing 406 n n C16 H162 STR sing 407 n n C17 C20 STR sing 408 n n C17 H17 STR sing 409 n n C18 H181 STR sing 410 n n C18 H182 STR sing 411 n n C18 H183 STR sing 412 n n C19 H191 STR sing 413 n n C19 H192 STR sing 414 n n C19 H193 STR sing 415 n n C20 O20 STR doub 416 n n C20 C21 STR sing 417 n n C21 H211 STR sing 418 n n C21 H212 STR sing 419 n n C21 H213 STR sing 420 n n # _atom_sites.entry_id 6GSD _atom_sites.fract_transf_matrix[1][1] 0.012684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STR A 1 401 401 STR STR . C 3 NAD A 1 402 2 NAD NAD . D 4 HOH A 1 501 6 HOH HOH . D 4 HOH A 2 502 8 HOH HOH . D 4 HOH A 3 503 25 HOH HOH . D 4 HOH A 4 504 7 HOH HOH . D 4 HOH A 5 505 24 HOH HOH . D 4 HOH A 6 506 1 HOH HOH . D 4 HOH A 7 507 5 HOH HOH . D 4 HOH A 8 508 4 HOH HOH . D 4 HOH A 9 509 3 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 23 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 21 HOH HOH . D 4 HOH A 14 514 9 HOH HOH . D 4 HOH A 15 515 22 HOH HOH . D 4 HOH A 16 516 20 HOH HOH . D 4 HOH A 17 517 13 HOH HOH . D 4 HOH A 18 518 17 HOH HOH . D 4 HOH A 19 519 15 HOH HOH . D 4 HOH A 20 520 18 HOH HOH . D 4 HOH A 21 521 11 HOH HOH . D 4 HOH A 22 522 16 HOH HOH . D 4 HOH A 23 523 27 HOH HOH . D 4 HOH A 24 524 14 HOH HOH . D 4 HOH A 25 525 19 HOH HOH . D 4 HOH A 26 526 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STR . . . B 2 -32.287 -18.192 14.983 0.68 83.56 ? C1 STR 401 A 1 HETATM 2 C C2 STR . . . B 2 -32.427 -16.837 15.529 0.68 88.6 ? C2 STR 401 A 1 HETATM 3 C C3 STR . . . B 2 -31.303 -15.844 14.893 0.68 95.43 ? C3 STR 401 A 1 HETATM 4 O O3 STR . . . B 2 -30.858 -14.983 15.529 0.68 102.12 ? O3 STR 401 A 1 HETATM 5 C C4 STR . . . B 2 -30.904 -16.186 13.467 0.68 92.42 ? C4 STR 401 A 1 HETATM 6 C C5 STR . . . B 2 -31.219 -17.175 12.742 0.68 87.03 ? C5 STR 401 A 1 HETATM 7 C C6 STR . . . B 2 -30.908 -17.245 11.227 0.68 86.03 ? C6 STR 401 A 1 HETATM 8 C C7 STR . . . B 2 -31.728 -18.257 10.594 0.68 83.8 ? C7 STR 401 A 1 HETATM 9 C C8 STR . . . B 2 -31.582 -19.605 11.396 0.68 82.07 ? C8 STR 401 A 1 HETATM 10 C C9 STR . . . B 2 -31.463 -19.339 12.88 0.68 82.85 ? C9 STR 401 A 1 HETATM 11 C C10 STR . . . B 2 -32.235 -18.162 13.29 0.68 85.35 ? C10 STR 401 A 1 HETATM 12 C C11 STR . . . B 2 -31.774 -20.739 13.551 0.68 80.83 ? C11 STR 401 A 1 HETATM 13 C C12 STR . . . B 2 -30.896 -21.825 13.09 0.68 82.61 ? C12 STR 401 A 1 HETATM 14 C C13 STR . . . B 2 -30.666 -21.852 11.556 0.68 80.16 ? C13 STR 401 A 1 HETATM 15 C C14 STR . . . B 2 -30.42 -20.249 11.119 0.68 80.86 ? C14 STR 401 A 1 HETATM 16 C C15 STR . . . B 2 -29.918 -20.407 9.539 0.68 80.23 ? C15 STR 401 A 1 HETATM 17 C C16 STR . . . B 2 -29.031 -21.732 9.806 0.68 82.34 ? C16 STR 401 A 1 HETATM 18 C C17 STR . . . B 2 -29.414 -22.501 11.247 0.68 81.75 ? C17 STR 401 A 1 HETATM 19 C C18 STR . . . B 2 -31.782 -22.416 10.859 0.68 78.11 ? C18 STR 401 A 1 HETATM 20 C C19 STR . . . B 2 -33.52 -18.192 12.899 0.68 88.87 ? C19 STR 401 A 1 HETATM 21 C C20 STR . . . B 2 -29.191 -23.899 11.164 0.68 82.4 ? C20 STR 401 A 1 HETATM 22 O O20 STR . . . B 2 -30.215 -24.63 11.436 0.68 80.55 ? O20 STR 401 A 1 HETATM 23 C C21 STR . . . B 2 -27.906 -24.616 10.968 0.68 80.45 ? C21 STR 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #