data_6GSD
#
_model_server_result.job_id            3CJgDm0lpmmnoMLE-eIyIg 
_model_server_result.datetime_utc      '2024-11-22 04:32:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gsd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    6GSD 
#
_exptl.entry_id    6GSD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GSD 
_cell.length_a            78.839 
_cell.length_b            78.839 
_cell.length_c            134.809 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GSD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     6GSD 
_atom_sites.fract_transf_matrix[1][1]    0.012684 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012684 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007418 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 STR A 1 401 401 STR STR . 
C 3 NAD A 1 402 2 NAD NAD . 
D 4 HOH A 1 501 6 HOH HOH . 
D 4 HOH A 2 502 8 HOH HOH . 
D 4 HOH A 3 503 25 HOH HOH . 
D 4 HOH A 4 504 7 HOH HOH . 
D 4 HOH A 5 505 24 HOH HOH . 
D 4 HOH A 6 506 1 HOH HOH . 
D 4 HOH A 7 507 5 HOH HOH . 
D 4 HOH A 8 508 4 HOH HOH . 
D 4 HOH A 9 509 3 HOH HOH . 
D 4 HOH A 10 510 10 HOH HOH . 
D 4 HOH A 11 511 23 HOH HOH . 
D 4 HOH A 12 512 12 HOH HOH . 
D 4 HOH A 13 513 21 HOH HOH . 
D 4 HOH A 14 514 9 HOH HOH . 
D 4 HOH A 15 515 22 HOH HOH . 
D 4 HOH A 16 516 20 HOH HOH . 
D 4 HOH A 17 517 13 HOH HOH . 
D 4 HOH A 18 518 17 HOH HOH . 
D 4 HOH A 19 519 15 HOH HOH . 
D 4 HOH A 20 520 18 HOH HOH . 
D 4 HOH A 21 521 11 HOH HOH . 
D 4 HOH A 22 522 16 HOH HOH . 
D 4 HOH A 23 523 27 HOH HOH . 
D 4 HOH A 24 524 14 HOH HOH . 
D 4 HOH A 25 525 19 HOH HOH . 
D 4 HOH A 26 526 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . C 3 -26.281 -11.279 23.343 1 98.58 ? PA NAD 402 A 1 
HETATM 2 O O1A NAD . . . C 3 -25.226 -12.189 23.003 1 103.27 ? O1A NAD 402 A 1 
HETATM 3 O O2A NAD . . . C 3 -27.446 -11.923 23.982 1 98.8 ? O2A NAD 402 A 1 
HETATM 4 O O5B NAD . . . C 3 -25.811 -10.153 24.391 1 89.07 ? O5B NAD 402 A 1 
HETATM 5 C C5B NAD . . . C 3 -26.507 -8.993 24.567 1 85.53 ? C5B NAD 402 A 1 
HETATM 6 C C4B NAD . . . C 3 -25.778 -7.989 25.385 1 91.27 ? C4B NAD 402 A 1 
HETATM 7 O O4B NAD . . . C 3 -26.545 -6.809 25.79 1 94.91 ? O4B NAD 402 A 1 
HETATM 8 C C3B NAD . . . C 3 -25.391 -8.636 26.86 1 92.54 ? C3B NAD 402 A 1 
HETATM 9 O O3B NAD . . . C 3 -24.172 -8.035 27.237 1 90.34 ? O3B NAD 402 A 1 
HETATM 10 C C2B NAD . . . C 3 -26.387 -8.165 27.832 1 94.95 ? C2B NAD 402 A 1 
HETATM 11 O O2B NAD . . . C 3 -26.003 -7.941 29.118 1 94.42 ? O2B NAD 402 A 1 
HETATM 12 C C1B NAD . . . C 3 -26.727 -6.729 27.188 1 96.46 ? C1B NAD 402 A 1 
HETATM 13 N N9A NAD . . . C 3 -28.112 -6.445 27.589 1 96.69 ? N9A NAD 402 A 1 
HETATM 14 C C8A NAD . . . C 3 -29.204 -7.274 27.488 1 96.24 ? C8A NAD 402 A 1 
HETATM 15 N N7A NAD . . . C 3 -30.345 -6.773 27.986 1 97.13 ? N7A NAD 402 A 1 
HETATM 16 C C5A NAD . . . C 3 -30.094 -5.52 28.14 1 96.34 ? C5A NAD 402 A 1 
HETATM 17 C C6A NAD . . . C 3 -30.967 -4.277 28.578 1 94.34 ? C6A NAD 402 A 1 
HETATM 18 N N6A NAD . . . C 3 -32.167 -4.377 28.771 1 96.48 ? N6A NAD 402 A 1 
HETATM 19 N N1A NAD . . . C 3 -30.278 -3.183 28.702 1 90.31 ? N1A NAD 402 A 1 
HETATM 20 C C2A NAD . . . C 3 -28.937 -3.017 28.375 1 87.01 ? C2A NAD 402 A 1 
HETATM 21 N N3A NAD . . . C 3 -28.291 -4.073 27.894 1 86.54 ? N3A NAD 402 A 1 
HETATM 22 C C4A NAD . . . C 3 -28.592 -5.274 27.783 1 94.09 ? C4A NAD 402 A 1 
HETATM 23 O O3 NAD . . . C 3 -26.668 -10.534 22.076 1 101.99 ? O3 NAD 402 A 1 
HETATM 24 P PN NAD . . . C 3 -26.447 -11.124 20.676 1 93.68 ? PN NAD 402 A 1 
HETATM 25 O O1N NAD . . . C 3 -26.68 -12.42 20.577 1 95.87 ? O1N NAD 402 A 1 
HETATM 26 O O2N NAD . . . C 3 -25.217 -10.377 20.158 1 85 ? O2N NAD 402 A 1 
HETATM 27 O O5D NAD . . . C 3 -27.648 -10.463 19.722 1 85.7 ? O5D NAD 402 A 1 
HETATM 28 C C5D NAD . . . C 3 -27.662 -9.176 19.226 1 78.31 ? C5D NAD 402 A 1 
HETATM 29 C C4D NAD . . . C 3 -28.38 -9.045 17.923 1 78.96 ? C4D NAD 402 A 1 
HETATM 30 O O4D NAD . . . C 3 -27.757 -10.071 17.139 1 85.8 ? O4D NAD 402 A 1 
HETATM 31 C C3D NAD . . . C 3 -29.79 -9.443 18.09 1 73.61 ? C3D NAD 402 A 1 
HETATM 32 O O3D NAD . . . C 3 -30.708 -8.613 17.439 1 64.05 ? O3D NAD 402 A 1 
HETATM 33 C C2D NAD . . . C 3 -29.883 -10.925 17.455 1 82.1 ? C2D NAD 402 A 1 
HETATM 34 O O2D NAD . . . C 3 -31.175 -10.975 16.842 1 86.37 ? O2D NAD 402 A 1 
HETATM 35 C C1D NAD . . . C 3 -28.821 -11.043 16.442 1 84.45 ? C1D NAD 402 A 1 
HETATM 36 N N1N NAD . . . C 3 -28.364 -12.282 16.336 1 78.79 ? N1N NAD 402 A 1 
HETATM 37 C C2N NAD . . . C 3 -27.832 -13.096 17.278 1 80.11 ? C2N NAD 402 A 1 
HETATM 38 C C3N NAD . . . C 3 -27.431 -14.297 17.078 1 78.17 ? C3N NAD 402 A 1 
HETATM 39 C C7N NAD . . . C 3 -26.81 -15.174 18.16 1 81.3 ? C7N NAD 402 A 1 
HETATM 40 O O7N NAD . . . C 3 -26.447 -16.342 17.784 1 83.46 ? O7N NAD 402 A 1 
HETATM 41 N N7N NAD . . . C 3 -26.758 -14.812 19.391 1 80.98 ? N7N NAD 402 A 1 
HETATM 42 C C4N NAD . . . C 3 -27.287 -14.733 15.627 1 71.61 ? C4N NAD 402 A 1 
HETATM 43 C C5N NAD . . . C 3 -27.759 -14.107 14.803 1 65.74 ? C5N NAD 402 A 1 
HETATM 44 C C6N NAD . . . C 3 -28.266 -12.698 15.017 1 68.26 ? C6N NAD 402 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#