data_6GSP # _model_server_result.job_id t2dbk26aZWWmgzZ_26bdhg _model_server_result.datetime_utc '2024-10-15 02:15:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gsp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":105}' # _entry.id 6GSP # _exptl.entry_id 6GSP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-3'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GSP _cell.length_a 48.35 _cell.length_b 51.11 _cell.length_c 40.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GSP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OD1 ASP 15 A ASP 15 1_555 B CA CA . A CA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc2 A OD2 ASP 15 A ASP 15 1_555 B CA CA . A CA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc3 B CA CA . A CA 107 1_555 D O HOH . A HOH 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc4 B CA CA . A CA 107 1_555 D O HOH . A HOH 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.281 ? metalc ? metalc5 B CA CA . A CA 107 1_555 D O HOH . A HOH 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.237 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 3GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-3'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6GSP _atom_sites.fract_transf_matrix[1][1] 0.020683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 107 107 CA CA . C 3 3GP A 1 105 105 3GP 3GP . D 4 HOH A 1 108 107 HOH HOH . D 4 HOH A 2 109 108 HOH HOH . D 4 HOH A 3 110 109 HOH HOH . D 4 HOH A 4 111 110 HOH HOH . D 4 HOH A 5 112 111 HOH HOH . D 4 HOH A 6 113 112 HOH HOH . D 4 HOH A 7 114 113 HOH HOH . D 4 HOH A 8 115 114 HOH HOH . D 4 HOH A 9 116 115 HOH HOH . D 4 HOH A 10 117 116 HOH HOH . D 4 HOH A 11 118 117 HOH HOH . D 4 HOH A 12 119 118 HOH HOH . D 4 HOH A 13 120 119 HOH HOH . D 4 HOH A 14 121 120 HOH HOH . D 4 HOH A 15 122 121 HOH HOH . D 4 HOH A 16 123 122 HOH HOH . D 4 HOH A 17 124 123 HOH HOH . D 4 HOH A 18 125 124 HOH HOH . D 4 HOH A 19 126 125 HOH HOH . D 4 HOH A 20 127 126 HOH HOH . D 4 HOH A 21 128 127 HOH HOH . D 4 HOH A 22 129 128 HOH HOH . D 4 HOH A 23 130 129 HOH HOH . D 4 HOH A 24 131 130 HOH HOH . D 4 HOH A 25 132 131 HOH HOH . D 4 HOH A 26 133 132 HOH HOH . D 4 HOH A 27 134 133 HOH HOH . D 4 HOH A 28 135 134 HOH HOH . D 4 HOH A 29 136 135 HOH HOH . D 4 HOH A 30 137 136 HOH HOH . D 4 HOH A 31 138 137 HOH HOH . D 4 HOH A 32 139 138 HOH HOH . D 4 HOH A 33 140 139 HOH HOH . D 4 HOH A 34 141 140 HOH HOH . D 4 HOH A 35 142 141 HOH HOH . D 4 HOH A 36 143 142 HOH HOH . D 4 HOH A 37 144 143 HOH HOH . D 4 HOH A 38 145 144 HOH HOH . D 4 HOH A 39 146 145 HOH HOH . D 4 HOH A 40 147 146 HOH HOH . D 4 HOH A 41 148 147 HOH HOH . D 4 HOH A 42 149 148 HOH HOH . D 4 HOH A 43 150 149 HOH HOH . D 4 HOH A 44 151 150 HOH HOH . D 4 HOH A 45 152 151 HOH HOH . D 4 HOH A 46 153 152 HOH HOH . D 4 HOH A 47 154 153 HOH HOH . D 4 HOH A 48 155 154 HOH HOH . D 4 HOH A 49 156 155 HOH HOH . D 4 HOH A 50 157 156 HOH HOH . D 4 HOH A 51 158 157 HOH HOH . D 4 HOH A 52 159 158 HOH HOH . D 4 HOH A 53 160 159 HOH HOH . D 4 HOH A 54 161 160 HOH HOH . D 4 HOH A 55 162 161 HOH HOH . D 4 HOH A 56 163 162 HOH HOH . D 4 HOH A 57 164 163 HOH HOH . D 4 HOH A 58 165 164 HOH HOH . D 4 HOH A 59 166 165 HOH HOH . D 4 HOH A 60 167 166 HOH HOH . D 4 HOH A 61 168 167 HOH HOH . D 4 HOH A 62 169 168 HOH HOH . D 4 HOH A 63 170 169 HOH HOH . D 4 HOH A 64 171 170 HOH HOH . D 4 HOH A 65 172 171 HOH HOH . D 4 HOH A 66 173 172 HOH HOH . D 4 HOH A 67 174 173 HOH HOH . D 4 HOH A 68 175 174 HOH HOH . D 4 HOH A 69 176 175 HOH HOH . D 4 HOH A 70 177 176 HOH HOH . D 4 HOH A 71 178 177 HOH HOH . D 4 HOH A 72 179 178 HOH HOH . D 4 HOH A 73 180 179 HOH HOH . D 4 HOH A 74 181 180 HOH HOH . D 4 HOH A 75 182 181 HOH HOH . D 4 HOH A 76 183 182 HOH HOH . D 4 HOH A 77 184 183 HOH HOH . D 4 HOH A 78 185 184 HOH HOH . D 4 HOH A 79 186 185 HOH HOH . D 4 HOH A 80 187 186 HOH HOH . D 4 HOH A 81 188 187 HOH HOH . D 4 HOH A 82 189 188 HOH HOH . D 4 HOH A 83 190 189 HOH HOH . D 4 HOH A 84 191 190 HOH HOH . D 4 HOH A 85 192 191 HOH HOH . D 4 HOH A 86 193 192 HOH HOH . D 4 HOH A 87 194 193 HOH HOH . D 4 HOH A 88 195 194 HOH HOH . D 4 HOH A 89 196 195 HOH HOH . D 4 HOH A 90 197 196 HOH HOH . D 4 HOH A 91 198 197 HOH HOH . D 4 HOH A 92 199 198 HOH HOH . D 4 HOH A 93 200 199 HOH HOH . D 4 HOH A 94 201 200 HOH HOH . D 4 HOH A 95 202 201 HOH HOH . D 4 HOH A 96 203 202 HOH HOH . D 4 HOH A 97 204 203 HOH HOH . D 4 HOH A 98 205 204 HOH HOH . D 4 HOH A 99 206 205 HOH HOH . D 4 HOH A 100 207 206 HOH HOH . D 4 HOH A 101 208 207 HOH HOH . D 4 HOH A 102 209 208 HOH HOH . D 4 HOH A 103 210 209 HOH HOH . D 4 HOH A 104 211 210 HOH HOH . D 4 HOH A 105 212 211 HOH HOH . D 4 HOH A 106 213 212 HOH HOH . D 4 HOH A 107 214 213 HOH HOH . D 4 HOH A 108 215 214 HOH HOH . D 4 HOH A 109 216 215 HOH HOH . D 4 HOH A 110 217 216 HOH HOH . D 4 HOH A 111 218 217 HOH HOH . D 4 HOH A 112 219 218 HOH HOH . D 4 HOH A 113 220 219 HOH HOH . D 4 HOH A 114 221 220 HOH HOH . D 4 HOH A 115 222 221 HOH HOH . D 4 HOH A 116 223 222 HOH HOH . D 4 HOH A 117 224 223 HOH HOH . D 4 HOH A 118 225 224 HOH HOH . D 4 HOH A 119 226 225 HOH HOH . D 4 HOH A 120 227 226 HOH HOH . D 4 HOH A 121 228 227 HOH HOH . D 4 HOH A 122 229 228 HOH HOH . D 4 HOH A 123 230 229 HOH HOH . D 4 HOH A 124 231 230 HOH HOH . D 4 HOH A 125 232 231 HOH HOH . D 4 HOH A 126 233 232 HOH HOH . D 4 HOH A 127 234 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3GP . . . C 3 21.03 37.954 19.466 1 46.48 ? P 3GP 105 A 1 HETATM 2 O O1P 3GP . . . C 3 22.161 37.766 18.529 1 45.82 ? O1P 3GP 105 A 1 HETATM 3 O O2P 3GP . . . C 3 21.223 39.189 20.245 1 45.51 ? O2P 3GP 105 A 1 HETATM 4 O O3P 3GP . . . C 3 19.691 37.936 18.825 1 46.12 ? O3P 3GP 105 A 1 HETATM 5 O O5' 3GP . . . C 3 20.056 37.261 23.155 1 40.82 ? O5' 3GP 105 A 1 HETATM 6 C C5' 3GP . . . C 3 20.094 35.849 23.354 1 39.14 ? C5' 3GP 105 A 1 HETATM 7 C C4' 3GP . . . C 3 20.626 35.143 22.144 1 39.4 ? C4' 3GP 105 A 1 HETATM 8 O O4' 3GP . . . C 3 20.174 33.804 22.119 1 37.15 ? O4' 3GP 105 A 1 HETATM 9 C C3' 3GP . . . C 3 20.08 35.819 20.93 1 41.4 ? C3' 3GP 105 A 1 HETATM 10 O O3' 3GP . . . C 3 21.134 36.528 20.3 1 40.78 ? O3' 3GP 105 A 1 HETATM 11 C C2' 3GP . . . C 3 19.599 34.743 20.068 1 39.6 ? C2' 3GP 105 A 1 HETATM 12 O O2' 3GP . . . C 3 20.469 34.534 18.993 1 40.74 ? O2' 3GP 105 A 1 HETATM 13 C C1' 3GP . . . C 3 19.563 33.501 20.877 1 37.53 ? C1' 3GP 105 A 1 HETATM 14 N N9 3GP . . . C 3 18.135 33.109 20.91 1 32.95 ? N9 3GP 105 A 1 HETATM 15 C C8 3GP . . . C 3 17.556 31.996 20.34 1 30.62 ? C8 3GP 105 A 1 HETATM 16 N N7 3GP . . . C 3 16.273 31.938 20.485 1 27.99 ? N7 3GP 105 A 1 HETATM 17 C C5 3GP . . . C 3 15.964 33.079 21.197 1 27.89 ? C5 3GP 105 A 1 HETATM 18 C C6 3GP . . . C 3 14.71 33.539 21.641 1 28.02 ? C6 3GP 105 A 1 HETATM 19 O O6 3GP . . . C 3 13.654 32.958 21.433 1 26.83 ? O6 3GP 105 A 1 HETATM 20 N N1 3GP . . . C 3 14.794 34.747 22.337 1 28.49 ? N1 3GP 105 A 1 HETATM 21 C C2 3GP . . . C 3 15.982 35.437 22.58 1 29.4 ? C2 3GP 105 A 1 HETATM 22 N N2 3GP . . . C 3 15.887 36.561 23.313 1 29.01 ? N2 3GP 105 A 1 HETATM 23 N N3 3GP . . . C 3 17.187 34.992 22.145 1 28.68 ? N3 3GP 105 A 1 HETATM 24 C C4 3GP . . . C 3 17.093 33.815 21.469 1 29.94 ? C4 3GP 105 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 24 #