data_6GT3 # _model_server_result.job_id RQ5W4qIknTUqfZO816vWIw _model_server_result.datetime_utc '2024-11-14 05:36:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":2422}' # _entry.id 6GT3 # _exptl.entry_id 6GT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GT3 _cell.length_a 39.55 _cell.length_b 179.714 _cell.length_c 140.776 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N ? 6 Z N N ? 6 AA N N ? 6 BA N N ? 6 CA N N ? 6 DA N N ? 6 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc3 B NA NA . A NA 2400 1_555 FA O HOH . A HOH 2514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc4 B NA NA . A NA 2400 1_555 FA O HOH . A HOH 2574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc5 B NA NA . A NA 2400 1_555 FA O HOH . A HOH 2582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 402 n n C10 C9 OLC doub 403 n n C10 C11 OLC sing 404 n n C9 C8 OLC sing 405 n n C17 C16 OLC sing 406 z n C11 C12 OLC sing 407 n n C8 C7 OLC sing 408 n n C24 C22 OLC sing 409 n n C24 O25 OLC sing 410 n n C16 C15 OLC sing 411 n n C12 C13 OLC sing 412 n n C7 C6 OLC sing 413 n n C15 C14 OLC sing 414 n n C13 C14 OLC sing 415 n n C6 C5 OLC sing 416 n n C5 C4 OLC sing 417 n n C4 C3 OLC sing 418 n n C3 C2 OLC sing 419 n n C2 C1 OLC sing 420 n n C21 C22 OLC sing 421 n n C21 O20 OLC sing 422 n n C1 O19 OLC doub 423 n n C1 O20 OLC sing 424 n n C22 O23 OLC sing 425 n n C18 H18 OLC sing 426 n n C18 H18A OLC sing 427 n n C18 H18B OLC sing 428 n n C10 H10 OLC sing 429 n n C9 H9 OLC sing 430 n n C17 H17 OLC sing 431 n n C17 H17A OLC sing 432 n n C11 H11 OLC sing 433 n n C11 H11A OLC sing 434 n n C8 H8 OLC sing 435 n n C8 H8A OLC sing 436 n n C24 H24 OLC sing 437 n n C24 H24A OLC sing 438 n n C16 H16 OLC sing 439 n n C16 H16A OLC sing 440 n n C12 H12 OLC sing 441 n n C12 H12A OLC sing 442 n n C7 H7 OLC sing 443 n n C7 H7A OLC sing 444 n n C15 H15 OLC sing 445 n n C15 H15A OLC sing 446 n n C13 H13 OLC sing 447 n n C13 H13A OLC sing 448 n n C6 H6 OLC sing 449 n n C6 H6A OLC sing 450 n n C14 H14 OLC sing 451 n n C14 H14A OLC sing 452 n n C5 H5 OLC sing 453 n n C5 H5A OLC sing 454 n n C4 H4 OLC sing 455 n n C4 H4A OLC sing 456 n n C3 H3 OLC sing 457 n n C3 H3A OLC sing 458 n n C2 H2 OLC sing 459 n n C2 H2A OLC sing 460 n n C21 H21 OLC sing 461 n n C21 H21A OLC sing 462 n n C22 H22 OLC sing 463 n n O25 HO25 OLC sing 464 n n O23 HO23 OLC sing 465 n n # _atom_sites.entry_id 6GT3 _atom_sites.fract_transf_matrix[1][1] 0.025284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 2400 2400 NA NA . C 3 F9Q A 1 2401 2401 F9Q HTL . D 4 CLR A 1 2402 2402 CLR CLR . E 4 CLR A 1 2403 2403 CLR CLR . F 4 CLR A 1 2404 2404 CLR CLR . G 5 OLA A 1 2405 2405 OLA OLA . H 5 OLA A 1 2406 2406 OLA OLA . I 5 OLA A 1 2407 2407 OLA OLA . J 5 OLA A 1 2408 2408 OLA OLA . K 5 OLA A 1 2409 2409 OLA OLA . L 5 OLA A 1 2410 2410 OLA OLA . M 5 OLA A 1 2411 2411 OLA OLA . N 5 OLA A 1 2412 2412 OLA OLA . O 5 OLA A 1 2413 2413 OLA OLA . P 5 OLA A 1 2414 2414 OLA OLA . Q 5 OLA A 1 2415 2415 OLA OLA . R 5 OLA A 1 2416 2416 OLA OLA . S 5 OLA A 1 2417 2417 OLA OLA . T 5 OLA A 1 2418 2418 OLA OLA . U 5 OLA A 1 2419 2419 OLA OLA . V 6 OLC A 1 2420 2420 OLC OLC . W 6 OLC A 1 2421 2421 OLC OLC . X 6 OLC A 1 2422 2422 OLC OLC . Y 6 OLC A 1 2423 2423 OLC OLC . Z 6 OLC A 1 2424 2424 OLC OLC . AA 6 OLC A 1 2425 2425 OLC OLC . BA 6 OLC A 1 2426 2426 OLC OLC . CA 6 OLC A 1 2427 2427 OLC OLC . DA 6 OLC A 1 2428 2428 OLC OLC . EA 6 OLC A 1 2429 2429 OLC OLC . FA 7 HOH A 1 2501 74 HOH HOH . FA 7 HOH A 2 2502 76 HOH HOH . FA 7 HOH A 3 2503 119 HOH HOH . FA 7 HOH A 4 2504 71 HOH HOH . FA 7 HOH A 5 2505 80 HOH HOH . FA 7 HOH A 6 2506 112 HOH HOH . FA 7 HOH A 7 2507 78 HOH HOH . FA 7 HOH A 8 2508 134 HOH HOH . FA 7 HOH A 9 2509 19 HOH HOH . FA 7 HOH A 10 2510 77 HOH HOH . FA 7 HOH A 11 2511 126 HOH HOH . FA 7 HOH A 12 2512 102 HOH HOH . FA 7 HOH A 13 2513 58 HOH HOH . FA 7 HOH A 14 2514 17 HOH HOH . FA 7 HOH A 15 2515 67 HOH HOH . FA 7 HOH A 16 2516 10 HOH HOH . FA 7 HOH A 17 2517 122 HOH HOH . FA 7 HOH A 18 2518 15 HOH HOH . FA 7 HOH A 19 2519 16 HOH HOH . FA 7 HOH A 20 2520 132 HOH HOH . FA 7 HOH A 21 2521 33 HOH HOH . FA 7 HOH A 22 2522 50 HOH HOH . FA 7 HOH A 23 2523 114 HOH HOH . FA 7 HOH A 24 2524 25 HOH HOH . FA 7 HOH A 25 2525 59 HOH HOH . FA 7 HOH A 26 2526 111 HOH HOH . FA 7 HOH A 27 2527 120 HOH HOH . FA 7 HOH A 28 2528 129 HOH HOH . FA 7 HOH A 29 2529 28 HOH HOH . FA 7 HOH A 30 2530 37 HOH HOH . FA 7 HOH A 31 2531 35 HOH HOH . FA 7 HOH A 32 2532 90 HOH HOH . FA 7 HOH A 33 2533 57 HOH HOH . FA 7 HOH A 34 2534 6 HOH HOH . FA 7 HOH A 35 2535 113 HOH HOH . FA 7 HOH A 36 2536 30 HOH HOH . FA 7 HOH A 37 2537 91 HOH HOH . FA 7 HOH A 38 2538 24 HOH HOH . FA 7 HOH A 39 2539 53 HOH HOH . FA 7 HOH A 40 2540 38 HOH HOH . FA 7 HOH A 41 2541 136 HOH HOH . FA 7 HOH A 42 2542 32 HOH HOH . FA 7 HOH A 43 2543 34 HOH HOH . FA 7 HOH A 44 2544 8 HOH HOH . FA 7 HOH A 45 2545 60 HOH HOH . FA 7 HOH A 46 2546 45 HOH HOH . FA 7 HOH A 47 2547 9 HOH HOH . FA 7 HOH A 48 2548 11 HOH HOH . FA 7 HOH A 49 2549 4 HOH HOH . FA 7 HOH A 50 2550 12 HOH HOH . FA 7 HOH A 51 2551 56 HOH HOH . FA 7 HOH A 52 2552 47 HOH HOH . FA 7 HOH A 53 2553 109 HOH HOH . FA 7 HOH A 54 2554 39 HOH HOH . FA 7 HOH A 55 2555 104 HOH HOH . FA 7 HOH A 56 2556 26 HOH HOH . FA 7 HOH A 57 2557 23 HOH HOH . FA 7 HOH A 58 2558 7 HOH HOH . FA 7 HOH A 59 2559 123 HOH HOH . FA 7 HOH A 60 2560 75 HOH HOH . FA 7 HOH A 61 2561 18 HOH HOH . FA 7 HOH A 62 2562 31 HOH HOH . FA 7 HOH A 63 2563 1 HOH HOH . FA 7 HOH A 64 2564 105 HOH HOH . FA 7 HOH A 65 2565 107 HOH HOH . FA 7 HOH A 66 2566 101 HOH HOH . FA 7 HOH A 67 2567 41 HOH HOH . FA 7 HOH A 68 2568 36 HOH HOH . FA 7 HOH A 69 2569 73 HOH HOH . FA 7 HOH A 70 2570 13 HOH HOH . FA 7 HOH A 71 2571 3 HOH HOH . FA 7 HOH A 72 2572 27 HOH HOH . FA 7 HOH A 73 2573 55 HOH HOH . FA 7 HOH A 74 2574 99 HOH HOH . FA 7 HOH A 75 2575 51 HOH HOH . FA 7 HOH A 76 2576 103 HOH HOH . FA 7 HOH A 77 2577 89 HOH HOH . FA 7 HOH A 78 2578 52 HOH HOH . FA 7 HOH A 79 2579 82 HOH HOH . FA 7 HOH A 80 2580 72 HOH HOH . FA 7 HOH A 81 2581 97 HOH HOH . FA 7 HOH A 82 2582 98 HOH HOH . FA 7 HOH A 83 2583 128 HOH HOH . FA 7 HOH A 84 2584 95 HOH HOH . FA 7 HOH A 85 2585 64 HOH HOH . FA 7 HOH A 86 2586 106 HOH HOH . FA 7 HOH A 87 2587 14 HOH HOH . FA 7 HOH A 88 2588 133 HOH HOH . FA 7 HOH A 89 2589 100 HOH HOH . FA 7 HOH A 90 2590 21 HOH HOH . FA 7 HOH A 91 2591 108 HOH HOH . FA 7 HOH A 92 2592 68 HOH HOH . FA 7 HOH A 93 2593 22 HOH HOH . FA 7 HOH A 94 2594 46 HOH HOH . FA 7 HOH A 95 2595 2 HOH HOH . FA 7 HOH A 96 2596 65 HOH HOH . FA 7 HOH A 97 2597 118 HOH HOH . FA 7 HOH A 98 2598 29 HOH HOH . FA 7 HOH A 99 2599 5 HOH HOH . FA 7 HOH A 100 2600 54 HOH HOH . FA 7 HOH A 101 2601 62 HOH HOH . FA 7 HOH A 102 2602 20 HOH HOH . FA 7 HOH A 103 2603 63 HOH HOH . FA 7 HOH A 104 2604 49 HOH HOH . FA 7 HOH A 105 2605 130 HOH HOH . FA 7 HOH A 106 2606 43 HOH HOH . FA 7 HOH A 107 2607 94 HOH HOH . FA 7 HOH A 108 2608 40 HOH HOH . FA 7 HOH A 109 2609 44 HOH HOH . FA 7 HOH A 110 2610 85 HOH HOH . FA 7 HOH A 111 2611 61 HOH HOH . FA 7 HOH A 112 2612 48 HOH HOH . FA 7 HOH A 113 2613 116 HOH HOH . FA 7 HOH A 114 2614 70 HOH HOH . FA 7 HOH A 115 2615 117 HOH HOH . FA 7 HOH A 116 2616 79 HOH HOH . FA 7 HOH A 117 2617 121 HOH HOH . FA 7 HOH A 118 2618 124 HOH HOH . FA 7 HOH A 119 2619 131 HOH HOH . FA 7 HOH A 120 2620 125 HOH HOH . FA 7 HOH A 121 2621 115 HOH HOH . FA 7 HOH A 122 2622 110 HOH HOH . FA 7 HOH A 123 2623 93 HOH HOH . FA 7 HOH A 124 2624 84 HOH HOH . FA 7 HOH A 125 2625 81 HOH HOH . FA 7 HOH A 126 2626 66 HOH HOH . FA 7 HOH A 127 2627 86 HOH HOH . FA 7 HOH A 128 2628 88 HOH HOH . FA 7 HOH A 129 2629 69 HOH HOH . FA 7 HOH A 130 2630 92 HOH HOH . FA 7 HOH A 131 2631 87 HOH HOH . FA 7 HOH A 132 2632 83 HOH HOH . FA 7 HOH A 133 2633 42 HOH HOH . FA 7 HOH A 134 2634 127 HOH HOH . FA 7 HOH A 135 2635 96 HOH HOH . FA 7 HOH A 136 2636 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 OLC . . . X 6 -3.473 -1.899 24.774 1 56.64 ? C9 OLC 2422 A 1 HETATM 2 C C8 OLC . . . X 6 -4.437 -0.763 24.748 1 54.02 ? C8 OLC 2422 A 1 HETATM 3 C C24 OLC . . . X 6 -1.576 12.535 26.606 1 47.36 ? C24 OLC 2422 A 1 HETATM 4 C C7 OLC . . . X 6 -3.832 0.388 25.543 1 53.2 ? C7 OLC 2422 A 1 HETATM 5 C C6 OLC . . . X 6 -3.253 1.514 24.695 1 47.16 ? C6 OLC 2422 A 1 HETATM 6 C C5 OLC . . . X 6 -3.121 2.841 25.39 1 45.61 ? C5 OLC 2422 A 1 HETATM 7 C C4 OLC . . . X 6 -3.649 4.062 24.69 1 41.68 ? C4 OLC 2422 A 1 HETATM 8 C C3 OLC . . . X 6 -3.084 5.268 25.405 1 36.49 ? C3 OLC 2422 A 1 HETATM 9 C C2 OLC . . . X 6 -3.02 6.594 24.669 1 36.48 ? C2 OLC 2422 A 1 HETATM 10 C C21 OLC . . . X 6 -1.893 9.902 26.41 1 40.52 ? C21 OLC 2422 A 1 HETATM 11 C C1 OLC . . . X 6 -2.538 7.641 25.648 1 40.02 ? C1 OLC 2422 A 1 HETATM 12 C C22 OLC . . . X 6 -1.822 11.292 25.822 1 45.13 ? C22 OLC 2422 A 1 HETATM 13 O O19 OLC . . . X 6 -2.244 7.324 26.769 1 50.19 ? O19 OLC 2422 A 1 HETATM 14 O O25 OLC . . . X 6 -1.5 13.435 25.514 1 50.55 ? O25 OLC 2422 A 1 HETATM 15 O O23 OLC . . . X 6 -1.984 11.547 24.436 1 53.58 ? O23 OLC 2422 A 1 HETATM 16 O O20 OLC . . . X 6 -2.38 9.041 25.382 1 38.88 ? O20 OLC 2422 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #