data_6GT6
#
_model_server_result.job_id            dai8N9EyBgmpnRWk9JlP3g 
_model_server_result.datetime_utc      '2025-07-17 12:00:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gt6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":304}' 
#
_entry.id    6GT6 
#
_exptl.entry_id    6GT6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GT6 
_cell.length_a            106.932 
_cell.length_b            106.932 
_cell.length_c            65.962 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GT6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 A 1 NAG B 247 NAG 
2 n B NAG 2 A 2 NAG B 347 NAG 
2 n B MAN 3 A 3 MAN B 447 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 B CYS 42 1_555 A SG CYS 41 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 33 B CYS 50 1_555 A SG CYS 103 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
disulf ? disulf3 A SG CYS 64 B CYS 77 1_555 A SG CYS 67 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
disulf ? disulf4 A SG CYS 114 B CYS 122 1_555 E SG CYS . B CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
disulf ? disulf5 A SG CYS 128 B CYS 136 1_555 A SG CYS 197 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf6 A SG CYS 160 B CYS 168 1_555 A SG CYS 176 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
disulf ? disulf7 A SG CYS 187 B CYS 191 1_555 A SG CYS 218 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A ND2 ASN 61 B ASN 74 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale2 B O4 NAG . A NAG 1 1_555 B C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
covale ? covale3 B O4 NAG . A NAG 2 1_555 B C1 MAN . A MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6GT6 
_atom_sites.fract_transf_matrix[1][1]    0.009352 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009352 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01516 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL B 1 304 885 GOL GOL . 
D 4 SO4 B 1 305 985 SO4 SO4 . 
E 5 CYS B 1 306 340 CYS CYS . 
F 6 HOH B 1 401 20 HOH HOH . 
F 6 HOH B 2 402 46 HOH HOH . 
F 6 HOH B 3 403 49 HOH HOH . 
F 6 HOH B 4 404 60 HOH HOH . 
F 6 HOH B 5 405 15 HOH HOH . 
F 6 HOH B 6 406 14 HOH HOH . 
F 6 HOH B 7 407 3 HOH HOH . 
F 6 HOH B 8 408 31 HOH HOH . 
F 6 HOH B 9 409 45 HOH HOH . 
F 6 HOH B 10 410 38 HOH HOH . 
F 6 HOH B 11 411 34 HOH HOH . 
F 6 HOH B 12 412 61 HOH HOH . 
F 6 HOH B 13 413 68 HOH HOH . 
F 6 HOH B 14 414 16 HOH HOH . 
F 6 HOH B 15 415 8 HOH HOH . 
F 6 HOH B 16 416 71 HOH HOH . 
F 6 HOH B 17 417 24 HOH HOH . 
F 6 HOH B 18 418 18 HOH HOH . 
F 6 HOH B 19 419 9 HOH HOH . 
F 6 HOH B 20 420 28 HOH HOH . 
F 6 HOH B 21 421 40 HOH HOH . 
F 6 HOH B 22 422 30 HOH HOH . 
F 6 HOH B 23 423 67 HOH HOH . 
F 6 HOH B 24 424 5 HOH HOH . 
F 6 HOH B 25 425 35 HOH HOH . 
F 6 HOH B 26 426 62 HOH HOH . 
F 6 HOH B 27 427 26 HOH HOH . 
F 6 HOH B 28 428 22 HOH HOH . 
F 6 HOH B 29 429 21 HOH HOH . 
F 6 HOH B 30 430 39 HOH HOH . 
F 6 HOH B 31 431 54 HOH HOH . 
F 6 HOH B 32 432 41 HOH HOH . 
F 6 HOH B 33 433 13 HOH HOH . 
F 6 HOH B 34 434 4 HOH HOH . 
F 6 HOH B 35 435 33 HOH HOH . 
F 6 HOH B 36 436 56 HOH HOH . 
F 6 HOH B 37 437 32 HOH HOH . 
F 6 HOH B 38 438 47 HOH HOH . 
F 6 HOH B 39 439 53 HOH HOH . 
F 6 HOH B 40 440 27 HOH HOH . 
F 6 HOH B 41 441 70 HOH HOH . 
F 6 HOH B 42 442 25 HOH HOH . 
F 6 HOH B 43 443 50 HOH HOH . 
F 6 HOH B 44 444 48 HOH HOH . 
F 6 HOH B 45 445 55 HOH HOH . 
F 6 HOH B 46 446 17 HOH HOH . 
F 6 HOH B 47 447 44 HOH HOH . 
F 6 HOH B 48 448 29 HOH HOH . 
F 6 HOH B 49 449 66 HOH HOH . 
F 6 HOH B 50 450 63 HOH HOH . 
F 6 HOH B 51 451 69 HOH HOH . 
F 6 HOH B 52 452 1 HOH HOH . 
F 6 HOH B 53 453 42 HOH HOH . 
F 6 HOH B 54 454 36 HOH HOH . 
F 6 HOH B 55 455 58 HOH HOH . 
F 6 HOH B 56 456 23 HOH HOH . 
F 6 HOH B 57 457 11 HOH HOH . 
F 6 HOH B 58 458 37 HOH HOH . 
F 6 HOH B 59 459 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -9.106 51.197 -7.959 1 57.75 ? C1 GOL 304 B 1 
HETATM 2 O O1 GOL . . . C 3 -8.59 51.481 -9.285 1 55.23 ? O1 GOL 304 B 1 
HETATM 3 C C2 GOL . . . C 3 -8.029 50.766 -6.932 1 61.16 ? C2 GOL 304 B 1 
HETATM 4 O O2 GOL . . . C 3 -6.794 51.521 -7.024 1 63.48 ? O2 GOL 304 B 1 
HETATM 5 C C3 GOL . . . C 3 -8.476 50.87 -5.464 1 61.52 ? C3 GOL 304 B 1 
HETATM 6 O O3 GOL . . . C 3 -9.847 50.534 -5.209 1 59.53 ? O3 GOL 304 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#