data_6GT8 # _model_server_result.job_id w82cA6BN_bEdtmak0ONe2w _model_server_result.datetime_utc '2024-12-05 00:09:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6GT8 # _exptl.entry_id 6GT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-DEOXY-D-ARABINO-HEXONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GT8 _cell.length_a 103.08 _cell.length_b 103.08 _cell.length_c 243.392 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -51.54 89.269899 -40.565333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 119 A CYS 120 1_555 A SG CYS 149 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 B SG CYS 119 B CYS 120 1_555 B SG CYS 149 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A C VAL 153 A VAL 154 1_555 A N KPI 154 A KPI 155 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C KPI 154 A KPI 155 1_555 A N ASP 155 A ASP 156 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 B C VAL 153 B VAL 154 1_555 B N KPI 154 B KPI 155 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.323 ? covale ? covale4 B C KPI 154 B KPI 155 1_555 B N ASP 155 B ASP 156 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id SSH _chem_comp.mon_nstd_flag . _chem_comp.name '3-DEOXY-D-ARABINO-HEXONIC ACID' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms D-2-KETO-3-DEOXYGLUCONATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C1 SSH sing 320 n n O2 H2 SSH sing 321 n n C1 O1 SSH doub 322 n n C1 C2 SSH sing 323 n n C2 C3 SSH sing 324 n n C2 OT SSH sing 325 n n C2 H2C1 SSH sing 326 n n C3 C4 SSH sing 327 n n C3 H3C1 SSH sing 328 n n C3 H3C2 SSH sing 329 n n C4 O4 SSH sing 330 n n C4 C5 SSH sing 331 n n C4 H4 SSH sing 332 n n O4 HA SSH sing 333 n n C5 O5 SSH sing 334 n n C5 C6 SSH sing 335 n n C5 H5 SSH sing 336 n n O5 HB SSH sing 337 n n C6 O6 SSH sing 338 n n C6 H6C1 SSH sing 339 n n C6 H6C2 SSH sing 340 n n O6 H6 SSH sing 341 n n OT HT SSH sing 342 n n # _atom_sites.entry_id 6GT8 _atom_sites.fract_transf_matrix[1][1] 0.009701 _atom_sites.fract_transf_matrix[1][2] 0.005601 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SSH A 1 301 1 SSH SSH . D 2 SSH B 1 301 2 SSH SSH . E 3 HOH B 1 401 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 SSH . B . C 2 -40.501 11.249 -15.269 0.91 25.37 ? O2 SSH 301 A 1 HETATM 2 C C1 SSH . B . C 2 -39.815 12.259 -14.913 0.91 37.44 ? C1 SSH 301 A 1 HETATM 3 O O1 SSH . B . C 2 -38.657 12.437 -15.409 0.91 39.07 ? O1 SSH 301 A 1 HETATM 4 C C2 SSH . B . C 2 -40.392 13.25 -13.882 0.91 42.58 ? C2 SSH 301 A 1 HETATM 5 C C3 SSH . B . C 2 -39.612 14.578 -13.922 0.91 48.32 ? C3 SSH 301 A 1 HETATM 6 C C4 SSH . B . C 2 -40.17 15.473 -15.054 0.91 57.36 ? C4 SSH 301 A 1 HETATM 7 O O4 SSH . B . C 2 -41.016 14.695 -15.875 0.91 52.23 ? O4 SSH 301 A 1 HETATM 8 C C5 SSH . B . C 2 -39.091 16.151 -15.934 0.91 61.93 ? C5 SSH 301 A 1 HETATM 9 O O5 SSH . B . C 2 -37.975 16.56 -15.183 0.91 67.07 ? O5 SSH 301 A 1 HETATM 10 C C6 SSH . B . C 2 -39.716 17.364 -16.664 0.91 62.36 ? C6 SSH 301 A 1 HETATM 11 O O6 SSH . B . C 2 -39.097 17.639 -17.9 0.91 67.41 ? O6 SSH 301 A 1 HETATM 12 H H3C1 SSH . B . C 2 -39.708 15.035 -13.072 0.91 24.6 ? H3C1 SSH 301 A 1 HETATM 13 H H3C2 SSH . B . C 2 -38.674 14.397 -14.087 0.91 24.6 ? H3C2 SSH 301 A 1 HETATM 14 H H4 SSH . B . C 2 -40.706 16.172 -14.647 0.91 33.64 ? H4 SSH 301 A 1 HETATM 15 H HA SSH . B . C 2 -41.43 15.203 -16.417 0.91 28.51 ? HA SSH 301 A 1 HETATM 16 H H5 SSH . B . C 2 -38.793 15.512 -16.601 0.91 38.21 ? H5 SSH 301 A 1 HETATM 17 H HB SSH . B . C 2 -37.267 16.247 -15.534 0.91 43.35 ? HB SSH 301 A 1 HETATM 18 H H6C1 SSH . B . C 2 -39.637 18.146 -16.095 0.91 38.64 ? H6C1 SSH 301 A 1 HETATM 19 H H6C2 SSH . B . C 2 -40.656 17.184 -16.819 0.91 38.64 ? H6C2 SSH 301 A 1 HETATM 20 H H6 SSH . B . C 2 -38.253 17.644 -17.799 0.91 43.69 ? H6 SSH 301 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #