data_6GTB # _model_server_result.job_id MHqvhlfipwzb1M8t37S4NA _model_server_result.datetime_utc '2024-11-22 23:12:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gtb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6GTB # _exptl.entry_id 6GTB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GTB _cell.length_a 91.338 _cell.length_b 91.338 _cell.length_c 133.065 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -91.338 0 3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 6_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -91.338 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 257 A CYS 255 1_555 A SG CYS 257 A CYS 255 6_545 ? A ? ? A ? ? ? ? ? ? ? 2.292 ? metalc ? metalc1 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc2 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc3 A O LEU 55 A LEU 53 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc4 A O ALA 58 A ALA 56 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc5 C NA NA . A NA 302 1_555 H O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc6 C NA NA . A NA 302 1_555 H O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc7 C NA NA . A NA 302 1_555 H O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 116 n n C1 C2 EDO sing 117 n n C1 H11 EDO sing 118 n n C1 H12 EDO sing 119 n n O1 HO1 EDO sing 120 n n C2 O2 EDO sing 121 n n C2 H21 EDO sing 122 n n C2 H22 EDO sing 123 n n O2 HO2 EDO sing 124 n n # _atom_sites.entry_id 6GTB _atom_sites.fract_transf_matrix[1][1] 0.010948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 301 NAD NAD . C 3 NA A 1 302 1 NA NA . D 4 BGC A 1 303 1 BGC XXX . E 5 FBK A 1 304 1 FBK 211 . F 6 EDO A 1 305 1 EDO EDO . G 7 DMS A 1 306 2 DMS DMS . H 8 HOH A 1 401 649 HOH HOH . H 8 HOH A 2 402 664 HOH HOH . H 8 HOH A 3 403 609 HOH HOH . H 8 HOH A 4 404 650 HOH HOH . H 8 HOH A 5 405 651 HOH HOH . H 8 HOH A 6 406 639 HOH HOH . H 8 HOH A 7 407 612 HOH HOH . H 8 HOH A 8 408 422 HOH HOH . H 8 HOH A 9 409 687 HOH HOH . H 8 HOH A 10 410 652 HOH HOH . H 8 HOH A 11 411 598 HOH HOH . H 8 HOH A 12 412 666 HOH HOH . H 8 HOH A 13 413 423 HOH HOH . H 8 HOH A 14 414 403 HOH HOH . H 8 HOH A 15 415 680 HOH HOH . H 8 HOH A 16 416 644 HOH HOH . H 8 HOH A 17 417 638 HOH HOH . H 8 HOH A 18 418 428 HOH HOH . H 8 HOH A 19 419 416 HOH HOH . H 8 HOH A 20 420 643 HOH HOH . H 8 HOH A 21 421 405 HOH HOH . H 8 HOH A 22 422 407 HOH HOH . H 8 HOH A 23 423 421 HOH HOH . H 8 HOH A 24 424 450 HOH HOH . H 8 HOH A 25 425 464 HOH HOH . H 8 HOH A 26 426 430 HOH HOH . H 8 HOH A 27 427 635 HOH HOH . H 8 HOH A 28 428 434 HOH HOH . H 8 HOH A 29 429 592 HOH HOH . H 8 HOH A 30 430 441 HOH HOH . H 8 HOH A 31 431 425 HOH HOH . H 8 HOH A 32 432 431 HOH HOH . H 8 HOH A 33 433 443 HOH HOH . H 8 HOH A 34 434 616 HOH HOH . H 8 HOH A 35 435 435 HOH HOH . H 8 HOH A 36 436 420 HOH HOH . H 8 HOH A 37 437 439 HOH HOH . H 8 HOH A 38 438 691 HOH HOH . H 8 HOH A 39 439 432 HOH HOH . H 8 HOH A 40 440 467 HOH HOH . H 8 HOH A 41 441 458 HOH HOH . H 8 HOH A 42 442 587 HOH HOH . H 8 HOH A 43 443 595 HOH HOH . H 8 HOH A 44 444 437 HOH HOH . H 8 HOH A 45 445 640 HOH HOH . H 8 HOH A 46 446 473 HOH HOH . H 8 HOH A 47 447 683 HOH HOH . H 8 HOH A 48 448 455 HOH HOH . H 8 HOH A 49 449 481 HOH HOH . H 8 HOH A 50 450 463 HOH HOH . H 8 HOH A 51 451 591 HOH HOH . H 8 HOH A 52 452 630 HOH HOH . H 8 HOH A 53 453 454 HOH HOH . H 8 HOH A 54 454 682 HOH HOH . H 8 HOH A 55 455 459 HOH HOH . H 8 HOH A 56 456 720 HOH HOH . H 8 HOH A 57 457 438 HOH HOH . H 8 HOH A 58 458 471 HOH HOH . H 8 HOH A 59 459 446 HOH HOH . H 8 HOH A 60 460 483 HOH HOH . H 8 HOH A 61 461 596 HOH HOH . H 8 HOH A 62 462 453 HOH HOH . H 8 HOH A 63 463 445 HOH HOH . H 8 HOH A 64 464 637 HOH HOH . H 8 HOH A 65 465 520 HOH HOH . H 8 HOH A 66 466 465 HOH HOH . H 8 HOH A 67 467 479 HOH HOH . H 8 HOH A 68 468 617 HOH HOH . H 8 HOH A 69 469 648 HOH HOH . H 8 HOH A 70 470 474 HOH HOH . H 8 HOH A 71 471 429 HOH HOH . H 8 HOH A 72 472 447 HOH HOH . H 8 HOH A 73 473 702 HOH HOH . H 8 HOH A 74 474 679 HOH HOH . H 8 HOH A 75 475 466 HOH HOH . H 8 HOH A 76 476 460 HOH HOH . H 8 HOH A 77 477 615 HOH HOH . H 8 HOH A 78 478 614 HOH HOH . H 8 HOH A 79 479 701 HOH HOH . H 8 HOH A 80 480 489 HOH HOH . H 8 HOH A 81 481 628 HOH HOH . H 8 HOH A 82 482 636 HOH HOH . H 8 HOH A 83 483 449 HOH HOH . H 8 HOH A 84 484 475 HOH HOH . H 8 HOH A 85 485 440 HOH HOH . H 8 HOH A 86 486 477 HOH HOH . H 8 HOH A 87 487 462 HOH HOH . H 8 HOH A 88 488 469 HOH HOH . H 8 HOH A 89 489 660 HOH HOH . H 8 HOH A 90 490 496 HOH HOH . H 8 HOH A 91 491 415 HOH HOH . H 8 HOH A 92 492 493 HOH HOH . H 8 HOH A 93 493 625 HOH HOH . H 8 HOH A 94 494 594 HOH HOH . H 8 HOH A 95 495 593 HOH HOH . H 8 HOH A 96 496 480 HOH HOH . H 8 HOH A 97 497 606 HOH HOH . H 8 HOH A 98 498 509 HOH HOH . H 8 HOH A 99 499 492 HOH HOH . H 8 HOH A 100 500 608 HOH HOH . H 8 HOH A 101 501 486 HOH HOH . H 8 HOH A 102 502 704 HOH HOH . H 8 HOH A 103 503 678 HOH HOH . H 8 HOH A 104 504 498 HOH HOH . H 8 HOH A 105 505 675 HOH HOH . H 8 HOH A 106 506 506 HOH HOH . H 8 HOH A 107 507 491 HOH HOH . H 8 HOH A 108 508 510 HOH HOH . H 8 HOH A 109 509 513 HOH HOH . H 8 HOH A 110 510 622 HOH HOH . H 8 HOH A 111 511 521 HOH HOH . H 8 HOH A 112 512 605 HOH HOH . H 8 HOH A 113 513 499 HOH HOH . H 8 HOH A 114 514 528 HOH HOH . H 8 HOH A 115 515 500 HOH HOH . H 8 HOH A 116 516 526 HOH HOH . H 8 HOH A 117 517 409 HOH HOH . H 8 HOH A 118 518 539 HOH HOH . H 8 HOH A 119 519 662 HOH HOH . H 8 HOH A 120 520 588 HOH HOH . H 8 HOH A 121 521 522 HOH HOH . H 8 HOH A 122 522 684 HOH HOH . H 8 HOH A 123 523 621 HOH HOH . H 8 HOH A 124 524 519 HOH HOH . H 8 HOH A 125 525 484 HOH HOH . H 8 HOH A 126 526 603 HOH HOH . H 8 HOH A 127 527 710 HOH HOH . H 8 HOH A 128 528 642 HOH HOH . H 8 HOH A 129 529 686 HOH HOH . H 8 HOH A 130 530 658 HOH HOH . H 8 HOH A 131 531 527 HOH HOH . H 8 HOH A 132 532 502 HOH HOH . H 8 HOH A 133 533 495 HOH HOH . H 8 HOH A 134 534 514 HOH HOH . H 8 HOH A 135 535 536 HOH HOH . H 8 HOH A 136 536 634 HOH HOH . H 8 HOH A 137 537 618 HOH HOH . H 8 HOH A 138 538 533 HOH HOH . H 8 HOH A 139 539 515 HOH HOH . H 8 HOH A 140 540 531 HOH HOH . H 8 HOH A 141 541 663 HOH HOH . H 8 HOH A 142 542 501 HOH HOH . H 8 HOH A 143 543 586 HOH HOH . H 8 HOH A 144 544 487 HOH HOH . H 8 HOH A 145 545 541 HOH HOH . H 8 HOH A 146 546 607 HOH HOH . H 8 HOH A 147 547 632 HOH HOH . H 8 HOH A 148 548 525 HOH HOH . H 8 HOH A 149 549 623 HOH HOH . H 8 HOH A 150 550 504 HOH HOH . H 8 HOH A 151 551 508 HOH HOH . H 8 HOH A 152 552 538 HOH HOH . H 8 HOH A 153 553 674 HOH HOH . H 8 HOH A 154 554 718 HOH HOH . H 8 HOH A 155 555 546 HOH HOH . H 8 HOH A 156 556 518 HOH HOH . H 8 HOH A 157 557 601 HOH HOH . H 8 HOH A 158 558 532 HOH HOH . H 8 HOH A 159 559 544 HOH HOH . H 8 HOH A 160 560 545 HOH HOH . H 8 HOH A 161 561 547 HOH HOH . H 8 HOH A 162 562 629 HOH HOH . H 8 HOH A 163 563 550 HOH HOH . H 8 HOH A 164 564 590 HOH HOH . H 8 HOH A 165 565 589 HOH HOH . H 8 HOH A 166 566 624 HOH HOH . H 8 HOH A 167 567 613 HOH HOH . H 8 HOH A 168 568 561 HOH HOH . H 8 HOH A 169 569 659 HOH HOH . H 8 HOH A 170 570 555 HOH HOH . H 8 HOH A 171 571 559 HOH HOH . H 8 HOH A 172 572 602 HOH HOH . H 8 HOH A 173 573 619 HOH HOH . H 8 HOH A 174 574 721 HOH HOH . H 8 HOH A 175 575 560 HOH HOH . H 8 HOH A 176 576 690 HOH HOH . H 8 HOH A 177 577 566 HOH HOH . H 8 HOH A 178 578 699 HOH HOH . H 8 HOH A 179 579 656 HOH HOH . H 8 HOH A 180 580 610 HOH HOH . H 8 HOH A 181 581 565 HOH HOH . H 8 HOH A 182 582 564 HOH HOH . H 8 HOH A 183 583 709 HOH HOH . H 8 HOH A 184 584 697 HOH HOH . H 8 HOH A 185 585 671 HOH HOH . H 8 HOH A 186 586 695 HOH HOH . H 8 HOH A 187 587 563 HOH HOH . H 8 HOH A 188 588 641 HOH HOH . H 8 HOH A 189 589 569 HOH HOH . H 8 HOH A 190 590 573 HOH HOH . H 8 HOH A 191 591 729 HOH HOH . H 8 HOH A 192 592 570 HOH HOH . H 8 HOH A 193 593 577 HOH HOH . H 8 HOH A 194 594 703 HOH HOH . H 8 HOH A 195 595 572 HOH HOH . H 8 HOH A 196 596 673 HOH HOH . H 8 HOH A 197 597 597 HOH HOH . H 8 HOH A 198 598 581 HOH HOH . H 8 HOH A 199 599 645 HOH HOH . H 8 HOH A 200 600 655 HOH HOH . H 8 HOH A 201 601 584 HOH HOH . H 8 HOH A 202 602 681 HOH HOH . H 8 HOH A 203 603 585 HOH HOH . H 8 HOH A 204 604 583 HOH HOH . H 8 HOH A 205 605 716 HOH HOH . H 8 HOH A 206 606 647 HOH HOH . H 8 HOH A 207 607 627 HOH HOH . H 8 HOH A 208 608 633 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 6 -5.79 -46.562 -33.468 1 33.34 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . F 6 -4.927 -45.777 -34.267 1 34.51 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . F 6 -4.824 -47.559 -32.755 1 37.81 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . F 6 -5.639 -48.628 -32.31 1 40.16 ? O2 EDO 305 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #