data_6GTH # _model_server_result.job_id l8bgF2aaAIiJrEnxEiOv4g _model_server_result.datetime_utc '2024-11-17 00:34:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6GTH # _exptl.entry_id 6GTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.26 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GTH _cell.length_a 41.84 _cell.length_b 41.84 _cell.length_c 233.28 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 43 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 70 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAN _struct_conn.ptnr2_label_comp_id NXL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NXL _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.349 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H13 N3 O6 S' _chem_comp.formula_weight 267.26 _chem_comp.id NXL _chem_comp.mon_nstd_flag . _chem_comp.name (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'avibactam, bound form;NXL104, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAK CAO NXL sing 237 n n CAJ CAO NXL sing 238 n n CAJ N NXL sing 239 n n OAL SAR NXL sing 240 n n CAO CAH NXL sing 241 n n CAN N NXL sing 242 n n CAN OAC NXL doub 243 n n OAG SAR NXL doub 244 n n N CA NXL sing 245 n n SAR OAE NXL doub 246 n n SAR OAD NXL sing 247 n n O C NXL doub 248 n n CAH CB NXL sing 249 n n CA C NXL sing 250 n n CA CB NXL sing 251 n n C NAA NXL sing 252 n n NAK OAL NXL sing 253 n n CAN H1 NXL sing 254 n n CAJ H2 NXL sing 255 n n CAJ H3 NXL sing 256 n n CA H4 NXL sing 257 n n NAA H5 NXL sing 258 n n NAA H6 NXL sing 259 n n CB H7 NXL sing 260 n n CB H8 NXL sing 261 n n CAH H9 NXL sing 262 n n CAH H10 NXL sing 263 n n CAO H11 NXL sing 264 n n NAK H12 NXL sing 265 n n OAD H13 NXL sing 266 n n # _atom_sites.entry_id 6GTH _atom_sites.fract_transf_matrix[1][1] 0.023901 _atom_sites.fract_transf_matrix[1][2] 0.013799 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NXL A 1 301 1 NXL NXL . C 3 HOH A 1 401 114 HOH HOH . C 3 HOH A 2 402 100 HOH HOH . C 3 HOH A 3 403 126 HOH HOH . C 3 HOH A 4 404 50 HOH HOH . C 3 HOH A 5 405 199 HOH HOH . C 3 HOH A 6 406 46 HOH HOH . C 3 HOH A 7 407 1 HOH HOH . C 3 HOH A 8 408 200 HOH HOH . C 3 HOH A 9 409 14 HOH HOH . C 3 HOH A 10 410 26 HOH HOH . C 3 HOH A 11 411 8 HOH HOH . C 3 HOH A 12 412 65 HOH HOH . C 3 HOH A 13 413 87 HOH HOH . C 3 HOH A 14 414 124 HOH HOH . C 3 HOH A 15 415 115 HOH HOH . C 3 HOH A 16 416 33 HOH HOH . C 3 HOH A 17 417 2 HOH HOH . C 3 HOH A 18 418 109 HOH HOH . C 3 HOH A 19 419 20 HOH HOH . C 3 HOH A 20 420 67 HOH HOH . C 3 HOH A 21 421 93 HOH HOH . C 3 HOH A 22 422 5 HOH HOH . C 3 HOH A 23 423 16 HOH HOH . C 3 HOH A 24 424 4 HOH HOH . C 3 HOH A 25 425 48 HOH HOH . C 3 HOH A 26 426 18 HOH HOH . C 3 HOH A 27 427 144 HOH HOH . C 3 HOH A 28 428 27 HOH HOH . C 3 HOH A 29 429 158 HOH HOH . C 3 HOH A 30 430 53 HOH HOH . C 3 HOH A 31 431 92 HOH HOH . C 3 HOH A 32 432 38 HOH HOH . C 3 HOH A 33 433 45 HOH HOH . C 3 HOH A 34 434 61 HOH HOH . C 3 HOH A 35 435 56 HOH HOH . C 3 HOH A 36 436 3 HOH HOH . C 3 HOH A 37 437 10 HOH HOH . C 3 HOH A 38 438 42 HOH HOH . C 3 HOH A 39 439 111 HOH HOH . C 3 HOH A 40 440 121 HOH HOH . C 3 HOH A 41 441 19 HOH HOH . C 3 HOH A 42 442 9 HOH HOH . C 3 HOH A 43 443 32 HOH HOH . C 3 HOH A 44 444 57 HOH HOH . C 3 HOH A 45 445 137 HOH HOH . C 3 HOH A 46 446 31 HOH HOH . C 3 HOH A 47 447 170 HOH HOH . C 3 HOH A 48 448 97 HOH HOH . C 3 HOH A 49 449 44 HOH HOH . C 3 HOH A 50 450 7 HOH HOH . C 3 HOH A 51 451 11 HOH HOH . C 3 HOH A 52 452 133 HOH HOH . C 3 HOH A 53 453 13 HOH HOH . C 3 HOH A 54 454 69 HOH HOH . C 3 HOH A 55 455 60 HOH HOH . C 3 HOH A 56 456 58 HOH HOH . C 3 HOH A 57 457 6 HOH HOH . C 3 HOH A 58 458 172 HOH HOH . C 3 HOH A 59 459 24 HOH HOH . C 3 HOH A 60 460 36 HOH HOH . C 3 HOH A 61 461 156 HOH HOH . C 3 HOH A 62 462 30 HOH HOH . C 3 HOH A 63 463 15 HOH HOH . C 3 HOH A 64 464 140 HOH HOH . C 3 HOH A 65 465 91 HOH HOH . C 3 HOH A 66 466 164 HOH HOH . C 3 HOH A 67 467 77 HOH HOH . C 3 HOH A 68 468 176 HOH HOH . C 3 HOH A 69 469 29 HOH HOH . C 3 HOH A 70 470 17 HOH HOH . C 3 HOH A 71 471 179 HOH HOH . C 3 HOH A 72 472 12 HOH HOH . C 3 HOH A 73 473 106 HOH HOH . C 3 HOH A 74 474 94 HOH HOH . C 3 HOH A 75 475 49 HOH HOH . C 3 HOH A 76 476 98 HOH HOH . C 3 HOH A 77 477 73 HOH HOH . C 3 HOH A 78 478 34 HOH HOH . C 3 HOH A 79 479 132 HOH HOH . C 3 HOH A 80 480 110 HOH HOH . C 3 HOH A 81 481 41 HOH HOH . C 3 HOH A 82 482 147 HOH HOH . C 3 HOH A 83 483 134 HOH HOH . C 3 HOH A 84 484 165 HOH HOH . C 3 HOH A 85 485 80 HOH HOH . C 3 HOH A 86 486 141 HOH HOH . C 3 HOH A 87 487 86 HOH HOH . C 3 HOH A 88 488 39 HOH HOH . C 3 HOH A 89 489 83 HOH HOH . C 3 HOH A 90 490 28 HOH HOH . C 3 HOH A 91 491 118 HOH HOH . C 3 HOH A 92 492 146 HOH HOH . C 3 HOH A 93 493 55 HOH HOH . C 3 HOH A 94 494 52 HOH HOH . C 3 HOH A 95 495 131 HOH HOH . C 3 HOH A 96 496 21 HOH HOH . C 3 HOH A 97 497 81 HOH HOH . C 3 HOH A 98 498 76 HOH HOH . C 3 HOH A 99 499 180 HOH HOH . C 3 HOH A 100 500 167 HOH HOH . C 3 HOH A 101 501 181 HOH HOH . C 3 HOH A 102 502 130 HOH HOH . C 3 HOH A 103 503 88 HOH HOH . C 3 HOH A 104 504 64 HOH HOH . C 3 HOH A 105 505 74 HOH HOH . C 3 HOH A 106 506 63 HOH HOH . C 3 HOH A 107 507 54 HOH HOH . C 3 HOH A 108 508 84 HOH HOH . C 3 HOH A 109 509 35 HOH HOH . C 3 HOH A 110 510 128 HOH HOH . C 3 HOH A 111 511 194 HOH HOH . C 3 HOH A 112 512 136 HOH HOH . C 3 HOH A 113 513 148 HOH HOH . C 3 HOH A 114 514 186 HOH HOH . C 3 HOH A 115 515 177 HOH HOH . C 3 HOH A 116 516 185 HOH HOH . C 3 HOH A 117 517 104 HOH HOH . C 3 HOH A 118 518 90 HOH HOH . C 3 HOH A 119 519 43 HOH HOH . C 3 HOH A 120 520 191 HOH HOH . C 3 HOH A 121 521 157 HOH HOH . C 3 HOH A 122 522 62 HOH HOH . C 3 HOH A 123 523 151 HOH HOH . C 3 HOH A 124 524 37 HOH HOH . C 3 HOH A 125 525 75 HOH HOH . C 3 HOH A 126 526 159 HOH HOH . C 3 HOH A 127 527 178 HOH HOH . C 3 HOH A 128 528 51 HOH HOH . C 3 HOH A 129 529 117 HOH HOH . C 3 HOH A 130 530 161 HOH HOH . C 3 HOH A 131 531 125 HOH HOH . C 3 HOH A 132 532 47 HOH HOH . C 3 HOH A 133 533 79 HOH HOH . C 3 HOH A 134 534 129 HOH HOH . C 3 HOH A 135 535 163 HOH HOH . C 3 HOH A 136 536 184 HOH HOH . C 3 HOH A 137 537 196 HOH HOH . C 3 HOH A 138 538 155 HOH HOH . C 3 HOH A 139 539 113 HOH HOH . C 3 HOH A 140 540 204 HOH HOH . C 3 HOH A 141 541 68 HOH HOH . C 3 HOH A 142 542 72 HOH HOH . C 3 HOH A 143 543 96 HOH HOH . C 3 HOH A 144 544 22 HOH HOH . C 3 HOH A 145 545 143 HOH HOH . C 3 HOH A 146 546 193 HOH HOH . C 3 HOH A 147 547 112 HOH HOH . C 3 HOH A 148 548 107 HOH HOH . C 3 HOH A 149 549 175 HOH HOH . C 3 HOH A 150 550 23 HOH HOH . C 3 HOH A 151 551 150 HOH HOH . C 3 HOH A 152 552 153 HOH HOH . C 3 HOH A 153 553 145 HOH HOH . C 3 HOH A 154 554 70 HOH HOH . C 3 HOH A 155 555 105 HOH HOH . C 3 HOH A 156 556 173 HOH HOH . C 3 HOH A 157 557 201 HOH HOH . C 3 HOH A 158 558 123 HOH HOH . C 3 HOH A 159 559 122 HOH HOH . C 3 HOH A 160 560 102 HOH HOH . C 3 HOH A 161 561 89 HOH HOH . C 3 HOH A 162 562 138 HOH HOH . C 3 HOH A 163 563 127 HOH HOH . C 3 HOH A 164 564 203 HOH HOH . C 3 HOH A 165 565 108 HOH HOH . C 3 HOH A 166 566 189 HOH HOH . C 3 HOH A 167 567 120 HOH HOH . C 3 HOH A 168 568 103 HOH HOH . C 3 HOH A 169 569 197 HOH HOH . C 3 HOH A 170 570 40 HOH HOH . C 3 HOH A 171 571 166 HOH HOH . C 3 HOH A 172 572 59 HOH HOH . C 3 HOH A 173 573 82 HOH HOH . C 3 HOH A 174 574 182 HOH HOH . C 3 HOH A 175 575 202 HOH HOH . C 3 HOH A 176 576 135 HOH HOH . C 3 HOH A 177 577 183 HOH HOH . C 3 HOH A 178 578 71 HOH HOH . C 3 HOH A 179 579 195 HOH HOH . C 3 HOH A 180 580 162 HOH HOH . C 3 HOH A 181 581 85 HOH HOH . C 3 HOH A 182 582 78 HOH HOH . C 3 HOH A 183 583 119 HOH HOH . C 3 HOH A 184 584 160 HOH HOH . C 3 HOH A 185 585 152 HOH HOH . C 3 HOH A 186 586 66 HOH HOH . C 3 HOH A 187 587 116 HOH HOH . C 3 HOH A 188 588 192 HOH HOH . C 3 HOH A 189 589 142 HOH HOH . C 3 HOH A 190 590 101 HOH HOH . C 3 HOH A 191 591 187 HOH HOH . C 3 HOH A 192 592 25 HOH HOH . C 3 HOH A 193 593 174 HOH HOH . C 3 HOH A 194 594 99 HOH HOH . C 3 HOH A 195 595 171 HOH HOH . C 3 HOH A 196 596 188 HOH HOH . C 3 HOH A 197 597 149 HOH HOH . C 3 HOH A 198 598 198 HOH HOH . C 3 HOH A 199 599 95 HOH HOH . C 3 HOH A 200 600 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC NXL . . . B 2 -2.168 0.71 18.921 1 17.03 ? OAC NXL 301 A 1 HETATM 2 C CAN NXL . . . B 2 -2.588 -0.324 19.302 1 18.08 ? CAN NXL 301 A 1 HETATM 3 N N NXL . . . B 2 -4.034 -0.535 19.283 1 16.08 ? N NXL 301 A 1 HETATM 4 C CAJ NXL . . . B 2 -4.769 -1.818 19.563 1 17.69 ? CAJ NXL 301 A 1 HETATM 5 C CA NXL . . . B 2 -4.952 0.5 18.678 1 17.83 ? CA NXL 301 A 1 HETATM 6 C C NXL . . . B 2 -6.027 1.003 19.619 1 22.41 ? C NXL 301 A 1 HETATM 7 O O NXL . . . B 2 -6.425 0.433 20.553 1 21.3 ? O NXL 301 A 1 HETATM 8 N NAA NXL . . . B 2 -6.564 2.301 19.366 1 23.23 ? NAA NXL 301 A 1 HETATM 9 C CB NXL . . . B 2 -5.533 -0.053 17.364 1 19.2 ? CB NXL 301 A 1 HETATM 10 C CAH NXL . . . B 2 -5.994 -1.457 17.449 1 19.15 ? CAH NXL 301 A 1 HETATM 11 C CAO NXL . . . B 2 -5.025 -2.337 18.161 1 20.41 ? CAO NXL 301 A 1 HETATM 12 N NAK NXL . . . B 2 -3.718 -2.329 17.453 1 23.35 ? NAK NXL 301 A 1 HETATM 13 O OAL NXL . . . B 2 -3.865 -2.876 16.174 1 23.29 ? OAL NXL 301 A 1 HETATM 14 S SAR NXL . . . B 2 -2.65 -2.306 15.232 1 21.66 ? SAR NXL 301 A 1 HETATM 15 O OAD NXL . . . B 2 -1.299 -2.461 15.894 1 25.79 ? OAD NXL 301 A 1 HETATM 16 O OAE NXL . . . B 2 -2.717 -3.142 13.99 1 22.99 ? OAE NXL 301 A 1 HETATM 17 O OAG NXL . . . B 2 -2.892 -0.888 14.786 1 29.12 ? OAG NXL 301 A 1 HETATM 18 H H2 NXL . . . B 2 -4.212 -2.435 20.064 1 21.23 ? H2 NXL 301 A 1 HETATM 19 H H3 NXL . . . B 2 -5.606 -1.643 20.022 1 21.23 ? H3 NXL 301 A 1 HETATM 20 H H4 NXL . . . B 2 -4.399 1.261 18.443 1 21.39 ? H4 NXL 301 A 1 HETATM 21 H H5 NXL . . . B 2 -6.29 2.756 18.69 1 27.88 ? H5 NXL 301 A 1 HETATM 22 H H6 NXL . . . B 2 -7.173 2.621 19.882 1 27.88 ? H6 NXL 301 A 1 HETATM 23 H H7 NXL . . . B 2 -4.849 0.004 16.679 1 23.03 ? H7 NXL 301 A 1 HETATM 24 H H8 NXL . . . B 2 -6.286 0.5 17.104 1 23.03 ? H8 NXL 301 A 1 HETATM 25 H H9 NXL . . . B 2 -6.122 -1.798 16.55 1 22.98 ? H9 NXL 301 A 1 HETATM 26 H H10 NXL . . . B 2 -6.841 -1.479 17.922 1 22.98 ? H10 NXL 301 A 1 HETATM 27 H H11 NXL . . . B 2 -5.376 -3.24 18.205 1 24.5 ? H11 NXL 301 A 1 HETATM 28 H H12 NXL . . . B 2 -3.427 -1.491 17.383 1 28.02 ? H12 NXL 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #