data_6GTR # _model_server_result.job_id JpsiANcAgWQS0AYDgXEv3g _model_server_result.datetime_utc '2025-01-11 18:55:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gtr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 6GTR # _exptl.entry_id 6GTR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GTR _cell.length_a 87.88 _cell.length_b 87.88 _cell.length_c 125.61 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GTR _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,H,J 1 1 B,D,G,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 105 A LEU 101 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc2 E O4A ACO . A ACO 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 220 n n C1 C2 GOL sing 221 n n C1 H11 GOL sing 222 n n C1 H12 GOL sing 223 n n O1 HO1 GOL sing 224 n n C2 O2 GOL sing 225 n n C2 C3 GOL sing 226 n n C2 H2 GOL sing 227 n n O2 HO2 GOL sing 228 n n C3 O3 GOL sing 229 n n C3 H31 GOL sing 230 n n C3 H32 GOL sing 231 n n O3 HO3 GOL sing 232 n n # _atom_sites.entry_id 6GTR _atom_sites.fract_transf_matrix[1][1] 0.011379 _atom_sites.fract_transf_matrix[1][2] 0.00657 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ACO A 1 201 1 ACO ACO . F 4 MG A 1 202 1 MG MG . G 5 GOL B 1 201 1 GOL GOL . H 6 HOH A 1 301 15 HOH HOH . H 6 HOH A 2 302 14 HOH HOH . H 6 HOH A 3 303 12 HOH HOH . H 6 HOH A 4 304 13 HOH HOH . H 6 HOH A 5 305 4 HOH HOH . H 6 HOH A 6 306 3 HOH HOH . H 6 HOH A 7 307 33 HOH HOH . H 6 HOH A 8 308 28 HOH HOH . H 6 HOH A 9 309 19 HOH HOH . I 6 HOH B 1 301 18 HOH HOH . I 6 HOH B 2 302 24 HOH HOH . I 6 HOH B 3 303 29 HOH HOH . I 6 HOH B 4 304 5 HOH HOH . I 6 HOH B 5 305 30 HOH HOH . I 6 HOH B 6 306 23 HOH HOH . I 6 HOH B 7 307 2 HOH HOH . I 6 HOH B 8 308 26 HOH HOH . I 6 HOH B 9 309 16 HOH HOH . I 6 HOH B 10 310 7 HOH HOH . I 6 HOH B 11 311 1 HOH HOH . I 6 HOH B 12 312 25 HOH HOH . I 6 HOH B 13 313 32 HOH HOH . I 6 HOH B 14 314 31 HOH HOH . I 6 HOH B 15 315 6 HOH HOH . I 6 HOH B 16 316 34 HOH HOH . I 6 HOH B 17 317 8 HOH HOH . I 6 HOH B 18 318 21 HOH HOH . J 6 HOH C 1 101 27 HOH HOH . K 6 HOH D 1 101 10 HOH HOH . K 6 HOH D 2 102 20 HOH HOH . K 6 HOH D 3 103 22 HOH HOH . K 6 HOH D 4 104 9 HOH HOH . K 6 HOH D 5 105 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 -43.564 36.83 13.702 1 47.1 ? C1 GOL 201 B 1 HETATM 2 O O1 GOL . . . G 5 -44.416 37.368 14.716 1 48.21 ? O1 GOL 201 B 1 HETATM 3 C C2 GOL . . . G 5 -43.889 37.387 12.333 1 47.64 ? C2 GOL 201 B 1 HETATM 4 O O2 GOL . . . G 5 -45.276 37.123 12.02 1 46.75 ? O2 GOL 201 B 1 HETATM 5 C C3 GOL . . . G 5 -42.97 36.722 11.327 1 45.52 ? C3 GOL 201 B 1 HETATM 6 O O3 GOL . . . G 5 -42.952 37.366 10.051 1 41.01 ? O3 GOL 201 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #