data_6GTT # _model_server_result.job_id ElkxiDkwx1y69MTpHSjAfA _model_server_result.datetime_utc '2025-02-18 15:23:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gtt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 6GTT # _exptl.entry_id 6GTT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.657 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GTT _cell.length_a 100.667 _cell.length_b 100.667 _cell.length_c 145.786 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GTT _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H37 N5 O3' _chem_comp.formula_weight 527.657 _chem_comp.id B96 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 B96 doub 70 n n C1 N2 B96 sing 71 n n C1 N9 B96 sing 72 n n N2 C3 B96 sing 73 n n N2 H2 B96 sing 74 n n C3 C4 B96 doub 75 n y C3 C8 B96 sing 76 n y C4 C5 B96 sing 77 n y C4 C31 B96 sing 78 n y C5 C6 B96 doub 79 n y C5 C34 B96 sing 80 n y C6 C7 B96 sing 81 n y C6 O41 B96 sing 82 n n C31 C32 B96 doub 83 n y C31 H31 B96 sing 84 n n C32 C33 B96 sing 85 n y C32 H32 B96 sing 86 n n C33 C34 B96 doub 87 n y C33 H33 B96 sing 88 n n C34 H34 B96 sing 89 n n C7 C8 B96 doub 90 n y C7 H7 B96 sing 91 n n C8 H8 B96 sing 92 n n N9 C10 B96 sing 93 n n N9 H9 B96 sing 94 n n C10 C14 B96 doub 95 n y C10 N11 B96 sing 96 n y C14 C13 B96 sing 97 n y C14 H14 B96 sing 98 n n C13 N12 B96 doub 99 n y C13 C16 B96 sing 100 n n N12 N11 B96 sing 101 n y N11 C15 B96 sing 102 n y C15 C20 B96 doub 103 n y C15 C24 B96 sing 104 n y C17 C16 B96 sing 105 n n C17 H171 B96 sing 106 n n C17 H172 B96 sing 107 n n C17 H173 B96 sing 108 n n C18 C16 B96 sing 109 n n C18 H181 B96 sing 110 n n C18 H182 B96 sing 111 n n C18 H183 B96 sing 112 n n C19 C16 B96 sing 113 n n C19 H191 B96 sing 114 n n C19 H192 B96 sing 115 n n C19 H193 B96 sing 116 n n C20 C21 B96 sing 117 n y C20 H20 B96 sing 118 n n C21 C22 B96 doub 119 n y C21 H21 B96 sing 120 n n C22 C23 B96 sing 121 n y C22 C25 B96 sing 122 n n C23 C24 B96 doub 123 n y C23 H23 B96 sing 124 n n C24 H24 B96 sing 125 n n C25 H251 B96 sing 126 n n C25 H252 B96 sing 127 n n C25 H253 B96 sing 128 n n O41 C42 B96 sing 129 n n C42 C43 B96 sing 130 n n C42 H421 B96 sing 131 n n C42 H422 B96 sing 132 n n C43 N44 B96 sing 133 n n C43 H431 B96 sing 134 n n C43 H432 B96 sing 135 n n N44 C45 B96 sing 136 n n N44 C49 B96 sing 137 n n C45 C46 B96 sing 138 n n C45 H451 B96 sing 139 n n C45 H452 B96 sing 140 n n C46 O47 B96 sing 141 n n C46 H461 B96 sing 142 n n C46 H462 B96 sing 143 n n O47 C48 B96 sing 144 n n C48 C49 B96 sing 145 n n C48 H481 B96 sing 146 n n C48 H482 B96 sing 147 n n C49 H491 B96 sing 148 n n C49 H492 B96 sing 149 n n # _atom_sites.entry_id 6GTT _atom_sites.fract_transf_matrix[1][1] 0.009934 _atom_sites.fract_transf_matrix[1][2] 0.005735 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B96 A 1 500 500 B96 DRG . C 3 HOH A 1 601 29 HOH HOH . C 3 HOH A 2 602 35 HOH HOH . C 3 HOH A 3 603 34 HOH HOH . C 3 HOH A 4 604 3 HOH HOH . C 3 HOH A 5 605 1 HOH HOH . C 3 HOH A 6 606 19 HOH HOH . C 3 HOH A 7 607 20 HOH HOH . C 3 HOH A 8 608 9 HOH HOH . C 3 HOH A 9 609 5 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 24 HOH HOH . C 3 HOH A 12 612 25 HOH HOH . C 3 HOH A 13 613 28 HOH HOH . C 3 HOH A 14 614 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B96 . . . B 2 31.914 18.787 -3.607 1 84.58 ? C1 B96 500 A 1 HETATM 2 O O1 B96 . . . B 2 30.985 18.11 -3.192 1 89.78 ? O1 B96 500 A 1 HETATM 3 N N2 B96 . . . B 2 31.924 19.403 -4.832 1 85.8 ? N2 B96 500 A 1 HETATM 4 C C3 B96 . . . B 2 30.922 19.293 -5.834 1 90.48 ? C3 B96 500 A 1 HETATM 5 C C4 B96 . . . B 2 31.245 18.58 -7.035 1 92.9 ? C4 B96 500 A 1 HETATM 6 C C5 B96 . . . B 2 30.255 18.465 -8.046 1 92.38 ? C5 B96 500 A 1 HETATM 7 C C6 B96 . . . B 2 28.984 19.052 -7.848 1 91.55 ? C6 B96 500 A 1 HETATM 8 C C31 B96 . . . B 2 32.513 17.988 -7.246 1 93.2 ? C31 B96 500 A 1 HETATM 9 C C32 B96 . . . B 2 32.789 17.317 -8.405 1 92.52 ? C32 B96 500 A 1 HETATM 10 C C33 B96 . . . B 2 31.809 17.205 -9.409 1 94.23 ? C33 B96 500 A 1 HETATM 11 C C34 B96 . . . B 2 30.57 17.764 -9.232 1 96.61 ? C34 B96 500 A 1 HETATM 12 C C7 B96 . . . B 2 28.694 19.746 -6.677 1 93.88 ? C7 B96 500 A 1 HETATM 13 C C8 B96 . . . B 2 29.666 19.868 -5.667 1 90.17 ? C8 B96 500 A 1 HETATM 14 N N9 B96 . . . B 2 33.045 19.001 -2.875 1 80.74 ? N9 B96 500 A 1 HETATM 15 C C10 B96 . . . B 2 33.206 18.734 -1.508 1 79.86 ? C10 B96 500 A 1 HETATM 16 C C14 B96 . . . B 2 32.572 17.836 -0.741 1 82.11 ? C14 B96 500 A 1 HETATM 17 C C13 B96 . . . B 2 33.059 17.94 0.55 1 79.06 ? C13 B96 500 A 1 HETATM 18 N N12 B96 . . . B 2 33.997 18.884 0.607 1 79.63 ? N12 B96 500 A 1 HETATM 19 N N11 B96 . . . B 2 34.087 19.375 -0.693 1 78.16 ? N11 B96 500 A 1 HETATM 20 C C15 B96 . . . B 2 34.991 20.44 -0.964 1 71.8 ? C15 B96 500 A 1 HETATM 21 C C17 B96 . . . B 2 32.907 18.006 3.037 1 74.48 ? C17 B96 500 A 1 HETATM 22 C C18 B96 . . . B 2 31.176 16.8 1.719 1 79.28 ? C18 B96 500 A 1 HETATM 23 C C19 B96 . . . B 2 33.498 15.877 1.879 1 78.43 ? C19 B96 500 A 1 HETATM 24 C C16 B96 . . . B 2 32.664 17.16 1.787 1 76.13 ? C16 B96 500 A 1 HETATM 25 C C20 B96 . . . B 2 36.292 20.366 -0.512 1 68.81 ? C20 B96 500 A 1 HETATM 26 C C21 B96 . . . B 2 37.159 21.427 -0.733 1 67.6 ? C21 B96 500 A 1 HETATM 27 C C22 B96 . . . B 2 36.736 22.576 -1.401 1 70.03 ? C22 B96 500 A 1 HETATM 28 C C23 B96 . . . B 2 35.409 22.631 -1.83 1 70.23 ? C23 B96 500 A 1 HETATM 29 C C24 B96 . . . B 2 34.539 21.574 -1.606 1 70.55 ? C24 B96 500 A 1 HETATM 30 C C25 B96 . . . B 2 37.682 23.727 -1.644 1 71.52 ? C25 B96 500 A 1 HETATM 31 O O41 B96 . . . B 2 28.11 18.876 -8.891 1 89.21 ? O41 B96 500 A 1 HETATM 32 C C42 B96 . . . B 2 26.743 19.319 -8.957 1 87.18 ? C42 B96 500 A 1 HETATM 33 C C43 B96 . . . B 2 25.837 18.173 -8.572 1 87.2 ? C43 B96 500 A 1 HETATM 34 N N44 B96 . . . B 2 25.88 17.045 -9.513 1 83.1 ? N44 B96 500 A 1 HETATM 35 C C45 B96 . . . B 2 26.574 15.826 -9.045 1 84.66 ? C45 B96 500 A 1 HETATM 36 C C46 B96 . . . B 2 25.625 14.92 -8.312 1 84.19 ? C46 B96 500 A 1 HETATM 37 O O47 B96 . . . B 2 24.498 14.595 -9.104 1 84.46 ? O47 B96 500 A 1 HETATM 38 C C48 B96 . . . B 2 23.79 15.777 -9.423 1 82.37 ? C48 B96 500 A 1 HETATM 39 C C49 B96 . . . B 2 24.632 16.716 -10.232 1 81.55 ? C49 B96 500 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 39 #