data_6GTU # _model_server_result.job_id VgExl0tcHwgYZqNusiwLKQ _model_server_result.datetime_utc '2024-11-29 08:50:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gtu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6GTU # _exptl.entry_id 6GTU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GTU _cell.length_a 129.51 _cell.length_b 129.51 _cell.length_c 129.51 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GTU _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 129.51 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 129.51 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 257 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 257 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 255 _struct_conn.ptnr2_symmetry 4_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.059 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 272 n n PA O2A NAD sing 273 n n PA O5B NAD sing 274 n n PA O3 NAD sing 275 n n O2A HOA2 NAD sing 276 n n O5B C5B NAD sing 277 n n C5B C4B NAD sing 278 n n C5B H51A NAD sing 279 n n C5B H52A NAD sing 280 n n C4B O4B NAD sing 281 n n C4B C3B NAD sing 282 n n C4B H4B NAD sing 283 n n O4B C1B NAD sing 284 n n C3B O3B NAD sing 285 n n C3B C2B NAD sing 286 n n C3B H3B NAD sing 287 n n O3B HO3A NAD sing 288 n n C2B O2B NAD sing 289 n n C2B C1B NAD sing 290 n n C2B H2B NAD sing 291 n n O2B HO2A NAD sing 292 n n C1B N9A NAD sing 293 n n C1B H1B NAD sing 294 n n N9A C8A NAD sing 295 n y N9A C4A NAD sing 296 n y C8A N7A NAD doub 297 n y C8A H8A NAD sing 298 n n N7A C5A NAD sing 299 n y C5A C6A NAD sing 300 n y C5A C4A NAD doub 301 n y C6A N6A NAD sing 302 n n C6A N1A NAD doub 303 n y N6A H61A NAD sing 304 n n N6A H62A NAD sing 305 n n N1A C2A NAD sing 306 n y C2A N3A NAD doub 307 n y C2A H2A NAD sing 308 n n N3A C4A NAD sing 309 n y O3 PN NAD sing 310 n n PN O1N NAD doub 311 n n PN O2N NAD sing 312 n n PN O5D NAD sing 313 n n O5D C5D NAD sing 314 n n C5D C4D NAD sing 315 n n C5D H51N NAD sing 316 n n C5D H52N NAD sing 317 n n C4D O4D NAD sing 318 n n C4D C3D NAD sing 319 n n C4D H4D NAD sing 320 n n O4D C1D NAD sing 321 n n C3D O3D NAD sing 322 n n C3D C2D NAD sing 323 n n C3D H3D NAD sing 324 n n O3D HO3N NAD sing 325 n n C2D O2D NAD sing 326 n n C2D C1D NAD sing 327 n n C2D H2D NAD sing 328 n n O2D HO2N NAD sing 329 n n C1D N1N NAD sing 330 n n C1D H1D NAD sing 331 n n N1N C2N NAD sing 332 n y N1N C6N NAD doub 333 n y C2N C3N NAD doub 334 n y C2N H2N NAD sing 335 n n C3N C7N NAD sing 336 n n C3N C4N NAD sing 337 n y C7N O7N NAD doub 338 n n C7N N7N NAD sing 339 n n N7N H71N NAD sing 340 n n N7N H72N NAD sing 341 n n C4N C5N NAD doub 342 n y C4N H4N NAD sing 343 n n C5N C6N NAD sing 344 n y C5N H5N NAD sing 345 n n C6N H6N NAD sing 346 n n # _atom_sites.entry_id 6GTU _atom_sites.fract_transf_matrix[1][1] 0.007721 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 301 NAD NAD . C 3 45N A 1 302 1 45N J7J . D 4 PGE A 1 303 1 PGE PGE . E 5 CL A 1 304 1 CL CL . F 6 HOH A 1 401 28 HOH HOH . F 6 HOH A 2 402 523 HOH HOH . F 6 HOH A 3 403 403 HOH HOH . F 6 HOH A 4 404 433 HOH HOH . F 6 HOH A 5 405 407 HOH HOH . F 6 HOH A 6 406 421 HOH HOH . F 6 HOH A 7 407 2 HOH HOH . F 6 HOH A 8 408 489 HOH HOH . F 6 HOH A 9 409 410 HOH HOH . F 6 HOH A 10 410 435 HOH HOH . F 6 HOH A 11 411 420 HOH HOH . F 6 HOH A 12 412 500 HOH HOH . F 6 HOH A 13 413 415 HOH HOH . F 6 HOH A 14 414 6 HOH HOH . F 6 HOH A 15 415 3 HOH HOH . F 6 HOH A 16 416 437 HOH HOH . F 6 HOH A 17 417 427 HOH HOH . F 6 HOH A 18 418 445 HOH HOH . F 6 HOH A 19 419 27 HOH HOH . F 6 HOH A 20 420 22 HOH HOH . F 6 HOH A 21 421 439 HOH HOH . F 6 HOH A 22 422 16 HOH HOH . F 6 HOH A 23 423 408 HOH HOH . F 6 HOH A 24 424 424 HOH HOH . F 6 HOH A 25 425 25 HOH HOH . F 6 HOH A 26 426 507 HOH HOH . F 6 HOH A 27 427 412 HOH HOH . F 6 HOH A 28 428 14 HOH HOH . F 6 HOH A 29 429 430 HOH HOH . F 6 HOH A 30 430 12 HOH HOH . F 6 HOH A 31 431 448 HOH HOH . F 6 HOH A 32 432 454 HOH HOH . F 6 HOH A 33 433 425 HOH HOH . F 6 HOH A 34 434 431 HOH HOH . F 6 HOH A 35 435 423 HOH HOH . F 6 HOH A 36 436 442 HOH HOH . F 6 HOH A 37 437 422 HOH HOH . F 6 HOH A 38 438 440 HOH HOH . F 6 HOH A 39 439 453 HOH HOH . F 6 HOH A 40 440 7 HOH HOH . F 6 HOH A 41 441 29 HOH HOH . F 6 HOH A 42 442 447 HOH HOH . F 6 HOH A 43 443 515 HOH HOH . F 6 HOH A 44 444 438 HOH HOH . F 6 HOH A 45 445 30 HOH HOH . F 6 HOH A 46 446 504 HOH HOH . F 6 HOH A 47 447 452 HOH HOH . F 6 HOH A 48 448 436 HOH HOH . F 6 HOH A 49 449 463 HOH HOH . F 6 HOH A 50 450 449 HOH HOH . F 6 HOH A 51 451 10 HOH HOH . F 6 HOH A 52 452 476 HOH HOH . F 6 HOH A 53 453 475 HOH HOH . F 6 HOH A 54 454 457 HOH HOH . F 6 HOH A 55 455 469 HOH HOH . F 6 HOH A 56 456 521 HOH HOH . F 6 HOH A 57 457 513 HOH HOH . F 6 HOH A 58 458 466 HOH HOH . F 6 HOH A 59 459 24 HOH HOH . F 6 HOH A 60 460 519 HOH HOH . F 6 HOH A 61 461 17 HOH HOH . F 6 HOH A 62 462 462 HOH HOH . F 6 HOH A 63 463 23 HOH HOH . F 6 HOH A 64 464 506 HOH HOH . F 6 HOH A 65 465 491 HOH HOH . F 6 HOH A 66 466 495 HOH HOH . F 6 HOH A 67 467 511 HOH HOH . F 6 HOH A 68 468 477 HOH HOH . F 6 HOH A 69 469 518 HOH HOH . F 6 HOH A 70 470 503 HOH HOH . F 6 HOH A 71 471 486 HOH HOH . F 6 HOH A 72 472 490 HOH HOH . F 6 HOH A 73 473 517 HOH HOH . F 6 HOH A 74 474 499 HOH HOH . F 6 HOH A 75 475 493 HOH HOH . F 6 HOH A 76 476 11 HOH HOH . F 6 HOH A 77 477 524 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 -12.591 15.718 46.161 1 45.17 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . B 2 -13.134 14.921 45.039 1 50.63 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . B 2 -13.671 16.522 46.895 1 33.9 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . B 2 -11.391 16.688 45.673 1 45.78 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . B 2 -10.296 16.084 44.956 1 36.73 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . B 2 -9.674 17.117 44.056 1 37.52 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . B 2 -8.582 16.503 43.335 1 38.41 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . B 2 -10.621 17.707 42.995 1 43.42 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . B 2 -10.452 19.112 42.877 1 46.13 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . B 2 -10.203 16.969 41.721 1 46.3 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . B 2 -10.449 17.694 40.523 1 47.46 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . B 2 -8.704 16.806 41.965 1 41.74 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . B 2 -8.103 15.73 41.191 1 41.95 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . B 2 -8.656 14.504 40.936 1 39.25 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . B 2 -7.985 13.785 40.068 1 47.5 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . B 2 -6.904 14.59 39.742 1 40.5 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . B 2 -5.833 14.421 38.842 1 37.48 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . B 2 -5.673 13.343 38.067 1 38.45 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . B 2 -4.941 15.43 38.729 1 42 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . B 2 -5.118 16.531 39.469 1 40.96 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . B 2 -6.089 16.805 40.345 1 44.79 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . B 2 -6.956 15.79 40.434 1 44.42 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . B 2 -11.897 14.762 47.235 1 39.02 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . B 2 -11.617 14.889 48.804 1 42.25 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . B 2 -12.711 14.235 49.56 1 42.31 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . B 2 -11.277 16.292 49.12 1 40.26 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . B 2 -10.306 13.977 48.951 1 46.86 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . B 2 -8.974 14.508 48.77 1 42.74 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . B 2 -7.943 13.471 49.149 1 41.13 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . B 2 -8.189 13 50.498 1 40.84 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . B 2 -7.913 12.219 48.273 1 40.86 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . B 2 -6.577 11.747 48.188 1 37.83 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . B 2 -8.793 11.25 49.067 1 41.24 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . B 2 -8.558 9.883 48.756 1 41.56 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . B 2 -8.349 11.605 50.478 1 35.08 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . B 2 -9.327 11.201 51.605 1 38.73 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . B 2 -10.545 11.77 51.665 1 34.54 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . B 2 -11.445 11.378 52.639 1 32.26 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . B 2 -12.809 11.981 52.81 1 35.94 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . B 2 -13.533 11.58 53.737 1 31.4 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . B 2 -13.187 12.947 51.956 1 36.13 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . B 2 -11.065 10.388 53.54 1 31.99 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . B 2 -9.804 9.828 53.461 1 34.3 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . B 2 -8.938 10.252 52.482 1 30.74 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 78 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 1280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #