data_6GTU # _model_server_result.job_id xY-hi8xurkiSZ95IIQez5Q _model_server_result.datetime_utc '2024-11-25 19:28:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gtu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6GTU # _exptl.entry_id 6GTU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 219.28 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(1,3-benzodioxol-5-ylmethyl)cyclopentanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GTU _cell.length_a 129.51 _cell.length_b 129.51 _cell.length_c 129.51 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GTU _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 129.51 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 129.51 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 257 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 257 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 255 _struct_conn.ptnr2_symmetry 4_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.059 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H17 N O2' _chem_comp.formula_weight 219.28 _chem_comp.id 45N _chem_comp.mon_nstd_flag . _chem_comp.name N-(1,3-benzodioxol-5-ylmethyl)cyclopentanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C10 45N sing 1 n n C9 C8 45N sing 2 n n C10 C11 45N sing 3 n n C8 C7 45N sing 4 n n C11 C7 45N sing 5 n n C7 N 45N sing 6 n n N C6 45N sing 7 n n O C12 45N sing 8 n n O C3 45N sing 9 n n C12 O1 45N sing 10 n n C3 C4 45N sing 11 n y C3 C2 45N doub 12 n y C4 C5 45N doub 13 n y O1 C2 45N sing 14 n n C2 C1 45N sing 15 n y C6 C5 45N sing 16 n n C5 C 45N sing 17 n y C1 C 45N doub 18 n y C4 H1 45N sing 19 n n C6 H2 45N sing 20 n n C6 H3 45N sing 21 n n C7 H4 45N sing 22 n n C8 H5 45N sing 23 n n C8 H6 45N sing 24 n n C9 H7 45N sing 25 n n C9 H8 45N sing 26 n n C10 H9 45N sing 27 n n C10 H10 45N sing 28 n n C11 H11 45N sing 29 n n C11 H12 45N sing 30 n n C12 H13 45N sing 31 n n C12 H14 45N sing 32 n n C1 H15 45N sing 33 n n C H16 45N sing 34 n n N H17 45N sing 35 n n # _atom_sites.entry_id 6GTU _atom_sites.fract_transf_matrix[1][1] 0.007721 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 301 NAD NAD . C 3 45N A 1 302 1 45N J7J . D 4 PGE A 1 303 1 PGE PGE . E 5 CL A 1 304 1 CL CL . F 6 HOH A 1 401 28 HOH HOH . F 6 HOH A 2 402 523 HOH HOH . F 6 HOH A 3 403 403 HOH HOH . F 6 HOH A 4 404 433 HOH HOH . F 6 HOH A 5 405 407 HOH HOH . F 6 HOH A 6 406 421 HOH HOH . F 6 HOH A 7 407 2 HOH HOH . F 6 HOH A 8 408 489 HOH HOH . F 6 HOH A 9 409 410 HOH HOH . F 6 HOH A 10 410 435 HOH HOH . F 6 HOH A 11 411 420 HOH HOH . F 6 HOH A 12 412 500 HOH HOH . F 6 HOH A 13 413 415 HOH HOH . F 6 HOH A 14 414 6 HOH HOH . F 6 HOH A 15 415 3 HOH HOH . F 6 HOH A 16 416 437 HOH HOH . F 6 HOH A 17 417 427 HOH HOH . F 6 HOH A 18 418 445 HOH HOH . F 6 HOH A 19 419 27 HOH HOH . F 6 HOH A 20 420 22 HOH HOH . F 6 HOH A 21 421 439 HOH HOH . F 6 HOH A 22 422 16 HOH HOH . F 6 HOH A 23 423 408 HOH HOH . F 6 HOH A 24 424 424 HOH HOH . F 6 HOH A 25 425 25 HOH HOH . F 6 HOH A 26 426 507 HOH HOH . F 6 HOH A 27 427 412 HOH HOH . F 6 HOH A 28 428 14 HOH HOH . F 6 HOH A 29 429 430 HOH HOH . F 6 HOH A 30 430 12 HOH HOH . F 6 HOH A 31 431 448 HOH HOH . F 6 HOH A 32 432 454 HOH HOH . F 6 HOH A 33 433 425 HOH HOH . F 6 HOH A 34 434 431 HOH HOH . F 6 HOH A 35 435 423 HOH HOH . F 6 HOH A 36 436 442 HOH HOH . F 6 HOH A 37 437 422 HOH HOH . F 6 HOH A 38 438 440 HOH HOH . F 6 HOH A 39 439 453 HOH HOH . F 6 HOH A 40 440 7 HOH HOH . F 6 HOH A 41 441 29 HOH HOH . F 6 HOH A 42 442 447 HOH HOH . F 6 HOH A 43 443 515 HOH HOH . F 6 HOH A 44 444 438 HOH HOH . F 6 HOH A 45 445 30 HOH HOH . F 6 HOH A 46 446 504 HOH HOH . F 6 HOH A 47 447 452 HOH HOH . F 6 HOH A 48 448 436 HOH HOH . F 6 HOH A 49 449 463 HOH HOH . F 6 HOH A 50 450 449 HOH HOH . F 6 HOH A 51 451 10 HOH HOH . F 6 HOH A 52 452 476 HOH HOH . F 6 HOH A 53 453 475 HOH HOH . F 6 HOH A 54 454 457 HOH HOH . F 6 HOH A 55 455 469 HOH HOH . F 6 HOH A 56 456 521 HOH HOH . F 6 HOH A 57 457 513 HOH HOH . F 6 HOH A 58 458 466 HOH HOH . F 6 HOH A 59 459 24 HOH HOH . F 6 HOH A 60 460 519 HOH HOH . F 6 HOH A 61 461 17 HOH HOH . F 6 HOH A 62 462 462 HOH HOH . F 6 HOH A 63 463 23 HOH HOH . F 6 HOH A 64 464 506 HOH HOH . F 6 HOH A 65 465 491 HOH HOH . F 6 HOH A 66 466 495 HOH HOH . F 6 HOH A 67 467 511 HOH HOH . F 6 HOH A 68 468 477 HOH HOH . F 6 HOH A 69 469 518 HOH HOH . F 6 HOH A 70 470 503 HOH HOH . F 6 HOH A 71 471 486 HOH HOH . F 6 HOH A 72 472 490 HOH HOH . F 6 HOH A 73 473 517 HOH HOH . F 6 HOH A 74 474 499 HOH HOH . F 6 HOH A 75 475 493 HOH HOH . F 6 HOH A 76 476 11 HOH HOH . F 6 HOH A 77 477 524 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 45N . . . C 3 -18.513 2.194 55.969 1 39.02 ? C4 45N 302 A 1 HETATM 2 C C5 45N . . . C 3 -19.344 1.781 57.008 1 40.31 ? C5 45N 302 A 1 HETATM 3 C C6 45N . . . C 3 -19.761 0.336 57.108 1 40.84 ? C6 45N 302 A 1 HETATM 4 C C7 45N . . . C 3 -19.247 -1.877 58.018 1 47.85 ? C7 45N 302 A 1 HETATM 5 C C8 45N . . . C 3 -19.529 -2.566 56.664 1 52.62 ? C8 45N 302 A 1 HETATM 6 C C9 45N . . . C 3 -18.782 -3.889 56.727 1 51.55 ? C9 45N 302 A 1 HETATM 7 C C10 45N . . . C 3 -17.634 -3.619 57.56 1 49.16 ? C10 45N 302 A 1 HETATM 8 C C11 45N . . . C 3 -18.19 -2.763 58.686 1 55.1 ? C11 45N 302 A 1 HETATM 9 C C12 45N . . . C 3 -17.331 5.511 55.304 1 37.61 ? C12 45N 302 A 1 HETATM 10 O O1 45N . . . C 3 -18.132 5.689 56.476 1 36.53 ? O1 45N 302 A 1 HETATM 11 C C2 45N . . . C 3 -18.617 4.439 56.788 1 41.12 ? C2 45N 302 A 1 HETATM 12 C C1 45N . . . C 3 -19.439 4.063 57.836 1 44.21 ? C1 45N 302 A 1 HETATM 13 O O 45N . . . C 3 -17.318 4.121 54.973 1 40.01 ? O 45N 302 A 1 HETATM 14 C C3 45N . . . C 3 -18.163 3.519 55.879 1 40.42 ? C3 45N 302 A 1 HETATM 15 C C 45N . . . C 3 -19.793 2.724 57.936 1 40.39 ? C 45N 302 A 1 HETATM 16 N N 45N . . . C 3 -18.807 -0.479 57.861 1 42.61 ? N 45N 302 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #