data_6GUB # _model_server_result.job_id JiefGAHp3-3eZX3dtcHfsQ _model_server_result.datetime_utc '2024-11-23 01:02:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 6GUB # _exptl.entry_id 6GUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.84 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2-chlorophenyl)-8-[(3~{R},4~{R})-1-methyl-3-oxidanyl-piperidin-4-yl]-5,7-bis(oxidanyl)chromen-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GUB _cell.length_a 75.184 _cell.length_b 136.224 _cell.length_c 149.973 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 163 A TYR 159 1_555 A N TPO 164 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C TPO 164 A TPO 160 1_555 A N HIS 165 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 C C TYR 163 C TYR 159 1_555 C N TPO 164 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C TPO 164 C TPO 160 1_555 C N HIS 165 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'C21 H20 Cl N O5' _chem_comp.formula_weight 401.84 _chem_comp.id F9Z _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2-chlorophenyl)-8-[(3~{R},4~{R})-1-methyl-3-oxidanyl-piperidin-4-yl]-5,7-bis(oxidanyl)chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 F9Z doub 83 n y C16 C15 F9Z sing 84 n y C17 C18 F9Z sing 85 n y C15 C14 F9Z doub 86 n y C18 CL1 F9Z sing 87 n n C18 C13 F9Z doub 88 n y C14 C13 F9Z sing 89 n y C1 N1 F9Z sing 90 n n C13 C12 F9Z sing 91 n n C2 N1 F9Z sing 92 n n C2 C3 F9Z sing 93 n n N1 C21 F9Z sing 94 n n C21 C20 F9Z sing 95 n n C12 O4 F9Z sing 96 n n C12 C11 F9Z doub 97 n n C3 C4 F9Z sing 98 n n O4 C19 F9Z sing 99 n n C4 C20 F9Z sing 100 n n C4 C5 F9Z sing 101 n n C11 C10 F9Z sing 102 n n C20 O5 F9Z sing 103 n n C19 C5 F9Z doub 104 n y C19 C9 F9Z sing 105 n y C5 C6 F9Z sing 106 n y C10 C9 F9Z sing 107 n n C10 O3 F9Z doub 108 n n C9 C8 F9Z doub 109 n y C6 O1 F9Z sing 110 n n C6 C7 F9Z doub 111 n y C8 C7 F9Z sing 112 n y C8 O2 F9Z sing 113 n n C4 H1 F9Z sing 114 n n C14 H2 F9Z sing 115 n n C11 H3 F9Z sing 116 n n C7 H4 F9Z sing 117 n n C3 H6 F9Z sing 118 n n C3 H7 F9Z sing 119 n n C1 H8 F9Z sing 120 n n C1 H9 F9Z sing 121 n n C1 H10 F9Z sing 122 n n C2 H11 F9Z sing 123 n n C2 H12 F9Z sing 124 n n O1 H13 F9Z sing 125 n n O2 H14 F9Z sing 126 n n C15 H15 F9Z sing 127 n n C16 H16 F9Z sing 128 n n C17 H17 F9Z sing 129 n n C20 H18 F9Z sing 130 n n O5 H19 F9Z sing 131 n n C21 H20 F9Z sing 132 n n C21 H21 F9Z sing 133 n n # _atom_sites.entry_id 6GUB _atom_sites.fract_transf_matrix[1][1] 0.013301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 F9Z A 1 301 1 F9Z DRG . F 3 F9Z C 1 301 2 F9Z DRG . G 4 HOH A 1 401 26 HOH HOH . G 4 HOH A 2 402 50 HOH HOH . G 4 HOH A 3 403 16 HOH HOH . G 4 HOH A 4 404 30 HOH HOH . G 4 HOH A 5 405 21 HOH HOH . G 4 HOH A 6 406 70 HOH HOH . G 4 HOH A 7 407 45 HOH HOH . G 4 HOH A 8 408 46 HOH HOH . G 4 HOH A 9 409 37 HOH HOH . G 4 HOH A 10 410 55 HOH HOH . G 4 HOH A 11 411 52 HOH HOH . G 4 HOH A 12 412 35 HOH HOH . G 4 HOH A 13 413 24 HOH HOH . G 4 HOH A 14 414 22 HOH HOH . G 4 HOH A 15 415 36 HOH HOH . G 4 HOH A 16 416 34 HOH HOH . G 4 HOH A 17 417 23 HOH HOH . G 4 HOH A 18 418 66 HOH HOH . G 4 HOH A 19 419 62 HOH HOH . G 4 HOH A 20 420 42 HOH HOH . G 4 HOH A 21 421 31 HOH HOH . G 4 HOH A 22 422 51 HOH HOH . G 4 HOH A 23 423 4 HOH HOH . G 4 HOH A 24 424 10 HOH HOH . G 4 HOH A 25 425 54 HOH HOH . G 4 HOH A 26 426 27 HOH HOH . G 4 HOH A 27 427 5 HOH HOH . G 4 HOH A 28 428 9 HOH HOH . G 4 HOH A 29 429 19 HOH HOH . G 4 HOH A 30 430 63 HOH HOH . G 4 HOH A 31 431 20 HOH HOH . G 4 HOH A 32 432 7 HOH HOH . G 4 HOH A 33 433 33 HOH HOH . H 4 HOH B 1 501 65 HOH HOH . H 4 HOH B 2 502 60 HOH HOH . H 4 HOH B 3 503 47 HOH HOH . H 4 HOH B 4 504 28 HOH HOH . H 4 HOH B 5 505 25 HOH HOH . H 4 HOH B 6 506 48 HOH HOH . H 4 HOH B 7 507 58 HOH HOH . H 4 HOH B 8 508 59 HOH HOH . H 4 HOH B 9 509 64 HOH HOH . H 4 HOH B 10 510 17 HOH HOH . H 4 HOH B 11 511 15 HOH HOH . H 4 HOH B 12 512 41 HOH HOH . H 4 HOH B 13 513 71 HOH HOH . H 4 HOH B 14 514 73 HOH HOH . H 4 HOH B 15 515 18 HOH HOH . H 4 HOH B 16 516 12 HOH HOH . H 4 HOH B 17 517 29 HOH HOH . I 4 HOH C 1 401 14 HOH HOH . I 4 HOH C 2 402 32 HOH HOH . I 4 HOH C 3 403 53 HOH HOH . I 4 HOH C 4 404 38 HOH HOH . I 4 HOH C 5 405 56 HOH HOH . I 4 HOH C 6 406 72 HOH HOH . I 4 HOH C 7 407 69 HOH HOH . I 4 HOH C 8 408 6 HOH HOH . I 4 HOH C 9 409 39 HOH HOH . I 4 HOH C 10 410 57 HOH HOH . I 4 HOH C 11 411 49 HOH HOH . J 4 HOH D 1 501 44 HOH HOH . J 4 HOH D 2 502 2 HOH HOH . J 4 HOH D 3 503 1 HOH HOH . J 4 HOH D 4 504 61 HOH HOH . J 4 HOH D 5 505 68 HOH HOH . J 4 HOH D 6 506 67 HOH HOH . J 4 HOH D 7 507 40 HOH HOH . J 4 HOH D 8 508 13 HOH HOH . J 4 HOH D 9 509 43 HOH HOH . J 4 HOH D 10 510 11 HOH HOH . J 4 HOH D 11 511 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 F9Z . . . E 3 -6.727 -20.725 20.546 1 27.11 ? C4 F9Z 301 A 1 HETATM 2 C C14 F9Z . . . E 3 -6.572 -25.139 24.958 1 40.64 ? C14 F9Z 301 A 1 HETATM 3 C C5 F9Z . . . E 3 -8.151 -20.86 21.074 1 25.11 ? C5 F9Z 301 A 1 HETATM 4 C C6 F9Z . . . E 3 -9.239 -20.268 20.393 1 25.19 ? C6 F9Z 301 A 1 HETATM 5 C C11 F9Z . . . E 3 -8.827 -23.122 24.602 1 25.85 ? C11 F9Z 301 A 1 HETATM 6 C C7 F9Z . . . E 3 -10.542 -20.379 20.884 1 25.57 ? C7 F9Z 301 A 1 HETATM 7 C C8 F9Z . . . E 3 -10.784 -21.103 22.037 1 24.46 ? C8 F9Z 301 A 1 HETATM 8 C C9 F9Z . . . E 3 -9.719 -21.724 22.726 1 25.15 ? C9 F9Z 301 A 1 HETATM 9 C C10 F9Z . . . E 3 -9.968 -22.487 23.963 1 26.2 ? C10 F9Z 301 A 1 HETATM 10 C C12 F9Z . . . E 3 -7.593 -23.062 24.008 1 29.89 ? C12 F9Z 301 A 1 HETATM 11 C C13 F9Z . . . E 3 -6.403 -23.851 24.451 1 37.21 ? C13 F9Z 301 A 1 HETATM 12 N N1 F9Z . . . E 3 -4.359 -20.598 18.846 1 28.06 ? N1 F9Z 301 A 1 HETATM 13 C C3 F9Z . . . E 3 -6.218 -21.986 19.856 1 27.5 ? C3 F9Z 301 A 1 HETATM 14 C C1 F9Z . . . E 3 -2.91 -20.505 18.695 1 29.27 ? C1 F9Z 301 A 1 HETATM 15 C C2 F9Z . . . E 3 -4.742 -21.859 19.513 1 29.13 ? C2 F9Z 301 A 1 HETATM 16 O O1 F9Z . . . E 3 -9.11 -19.542 19.245 1 24.76 ? O1 F9Z 301 A 1 HETATM 17 O O2 F9Z . . . E 3 -12.056 -21.231 22.475 1 24.34 ? O2 F9Z 301 A 1 HETATM 18 O O3 F9Z . . . E 3 -11.093 -22.542 24.457 1 28.4 ? O3 F9Z 301 A 1 HETATM 19 C C15 F9Z . . . E 3 -5.486 -25.905 25.363 1 43.79 ? C15 F9Z 301 A 1 HETATM 20 C C16 F9Z . . . E 3 -4.208 -25.394 25.305 1 43.63 ? C16 F9Z 301 A 1 HETATM 21 C C17 F9Z . . . E 3 -4.01 -24.124 24.835 1 43.48 ? C17 F9Z 301 A 1 HETATM 22 C C18 F9Z . . . E 3 -5.099 -23.369 24.417 1 43.72 ? C18 F9Z 301 A 1 HETATM 23 CL CL1 F9Z . . . E 3 -4.748 -21.813 23.824 1 70.26 ? CL1 F9Z 301 A 1 HETATM 24 O O4 F9Z . . . E 3 -7.366 -22.246 22.883 1 26.15 ? O4 F9Z 301 A 1 HETATM 25 C C19 F9Z . . . E 3 -8.411 -21.607 22.226 1 25.46 ? C19 F9Z 301 A 1 HETATM 26 C C20 F9Z . . . E 3 -6.366 -19.61 19.572 1 28.44 ? C20 F9Z 301 A 1 HETATM 27 O O5 F9Z . . . E 3 -6.907 -18.348 19.832 1 38.96 ? O5 F9Z 301 A 1 HETATM 28 C C21 F9Z . . . E 3 -4.865 -19.456 19.601 1 27.75 ? C21 F9Z 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 28 #