data_6GUR
#
_model_server_result.job_id            IoT7-QHdVzYHmsOuU4T1Fw 
_model_server_result.datetime_utc      '2024-11-05 01:57:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gur 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":903}' 
#
_entry.id    6GUR 
#
_exptl.entry_id    6GUR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GUR 
_cell.length_a            54.74 
_cell.length_b            89.99 
_cell.length_c            129.81 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GUR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 148 A SER 148 1_555 C C6 FN8 . A FN8 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale2 B OG SER 148 B SER 148 1_555 H C6 FN8 . B FN8 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
metalc ? metalc1 C O3 FN8 . A FN8 901 1_555 D FE FE . A FE 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc2 C O71 FN8 . A FN8 901 1_555 D FE FE . A FE 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc3 H N3 FN8 . B FN8 901 1_555 I FE FE . B FE 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
metalc ? metalc4 H O3 FN8 . B FN8 901 1_555 I FE FE . B FE 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc5 H O71 FN8 . B FN8 901 1_555 I FE FE . B FE 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 189 n n 
C1 C2 GOL sing 190 n n 
C1 H11 GOL sing 191 n n 
C1 H12 GOL sing 192 n n 
O1 HO1 GOL sing 193 n n 
C2 O2 GOL sing 194 n n 
C2 C3 GOL sing 195 n n 
C2 H2 GOL sing 196 n n 
O2 HO2 GOL sing 197 n n 
C3 O3 GOL sing 198 n n 
C3 H31 GOL sing 199 n n 
C3 H32 GOL sing 200 n n 
O3 HO3 GOL sing 201 n n 
#
_atom_sites.entry_id                     6GUR 
_atom_sites.fract_transf_matrix[1][1]    0.018268 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011112 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007704 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FN8 A 1 901 901 FN8 LIG . 
D 3 FE A 1 902 902 FE FE . 
E 4 GOL A 1 903 1 GOL GOL . 
F 4 GOL A 1 904 3 GOL GOL . 
G 4 GOL A 1 905 5 GOL GOL . 
H 2 FN8 B 1 901 901 FN8 LIG . 
I 3 FE B 1 902 902 FE FE . 
J 4 GOL B 1 903 2 GOL GOL . 
K 4 GOL B 1 904 4 GOL GOL . 
L 4 GOL B 1 905 6 GOL GOL . 
M 5 CO3 B 1 906 7 CO3 CO3 . 
N 5 CO3 B 1 907 8 CO3 CO3 . 
O 6 HOH A 1 1001 106 HOH HOH . 
O 6 HOH A 2 1002 151 HOH HOH . 
O 6 HOH A 3 1003 26 HOH HOH . 
O 6 HOH A 4 1004 77 HOH HOH . 
O 6 HOH A 5 1005 49 HOH HOH . 
O 6 HOH A 6 1006 133 HOH HOH . 
O 6 HOH A 7 1007 173 HOH HOH . 
O 6 HOH A 8 1008 73 HOH HOH . 
O 6 HOH A 9 1009 132 HOH HOH . 
O 6 HOH A 10 1010 161 HOH HOH . 
O 6 HOH A 11 1011 124 HOH HOH . 
O 6 HOH A 12 1012 90 HOH HOH . 
O 6 HOH A 13 1013 105 HOH HOH . 
O 6 HOH A 14 1014 11 HOH HOH . 
O 6 HOH A 15 1015 99 HOH HOH . 
O 6 HOH A 16 1016 98 HOH HOH . 
O 6 HOH A 17 1017 87 HOH HOH . 
O 6 HOH A 18 1018 80 HOH HOH . 
O 6 HOH A 19 1019 127 HOH HOH . 
O 6 HOH A 20 1020 21 HOH HOH . 
O 6 HOH A 21 1021 70 HOH HOH . 
O 6 HOH A 22 1022 125 HOH HOH . 
O 6 HOH A 23 1023 171 HOH HOH . 
O 6 HOH A 24 1024 101 HOH HOH . 
O 6 HOH A 25 1025 27 HOH HOH . 
O 6 HOH A 26 1026 63 HOH HOH . 
O 6 HOH A 27 1027 62 HOH HOH . 
O 6 HOH A 28 1028 40 HOH HOH . 
O 6 HOH A 29 1029 33 HOH HOH . 
O 6 HOH A 30 1030 14 HOH HOH . 
O 6 HOH A 31 1031 61 HOH HOH . 
O 6 HOH A 32 1032 163 HOH HOH . 
O 6 HOH A 33 1033 85 HOH HOH . 
O 6 HOH A 34 1034 137 HOH HOH . 
O 6 HOH A 35 1035 146 HOH HOH . 
O 6 HOH A 36 1036 123 HOH HOH . 
O 6 HOH A 37 1037 113 HOH HOH . 
O 6 HOH A 38 1038 139 HOH HOH . 
O 6 HOH A 39 1039 110 HOH HOH . 
O 6 HOH A 40 1040 17 HOH HOH . 
O 6 HOH A 41 1041 170 HOH HOH . 
O 6 HOH A 42 1042 100 HOH HOH . 
O 6 HOH A 43 1043 162 HOH HOH . 
O 6 HOH A 44 1044 20 HOH HOH . 
O 6 HOH A 45 1045 52 HOH HOH . 
O 6 HOH A 46 1046 94 HOH HOH . 
O 6 HOH A 47 1047 95 HOH HOH . 
O 6 HOH A 48 1048 22 HOH HOH . 
O 6 HOH A 49 1049 37 HOH HOH . 
O 6 HOH A 50 1050 177 HOH HOH . 
O 6 HOH A 51 1051 35 HOH HOH . 
O 6 HOH A 52 1052 15 HOH HOH . 
O 6 HOH A 53 1053 28 HOH HOH . 
O 6 HOH A 54 1054 88 HOH HOH . 
O 6 HOH A 55 1055 97 HOH HOH . 
O 6 HOH A 56 1056 159 HOH HOH . 
O 6 HOH A 57 1057 128 HOH HOH . 
O 6 HOH A 58 1058 25 HOH HOH . 
O 6 HOH A 59 1059 136 HOH HOH . 
O 6 HOH A 60 1060 178 HOH HOH . 
O 6 HOH A 61 1061 31 HOH HOH . 
O 6 HOH A 62 1062 51 HOH HOH . 
O 6 HOH A 63 1063 169 HOH HOH . 
O 6 HOH A 64 1064 48 HOH HOH . 
O 6 HOH A 65 1065 144 HOH HOH . 
O 6 HOH A 66 1066 72 HOH HOH . 
O 6 HOH A 67 1067 71 HOH HOH . 
O 6 HOH A 68 1068 54 HOH HOH . 
O 6 HOH A 69 1069 158 HOH HOH . 
O 6 HOH A 70 1070 43 HOH HOH . 
O 6 HOH A 71 1071 117 HOH HOH . 
O 6 HOH A 72 1072 86 HOH HOH . 
O 6 HOH A 73 1073 78 HOH HOH . 
O 6 HOH A 74 1074 104 HOH HOH . 
O 6 HOH A 75 1075 168 HOH HOH . 
O 6 HOH A 76 1076 75 HOH HOH . 
O 6 HOH A 77 1077 58 HOH HOH . 
O 6 HOH A 78 1078 140 HOH HOH . 
O 6 HOH A 79 1079 187 HOH HOH . 
O 6 HOH A 80 1080 179 HOH HOH . 
P 6 HOH B 1 1001 157 HOH HOH . 
P 6 HOH B 2 1002 174 HOH HOH . 
P 6 HOH B 3 1003 24 HOH HOH . 
P 6 HOH B 4 1004 81 HOH HOH . 
P 6 HOH B 5 1005 119 HOH HOH . 
P 6 HOH B 6 1006 176 HOH HOH . 
P 6 HOH B 7 1007 13 HOH HOH . 
P 6 HOH B 8 1008 153 HOH HOH . 
P 6 HOH B 9 1009 83 HOH HOH . 
P 6 HOH B 10 1010 64 HOH HOH . 
P 6 HOH B 11 1011 67 HOH HOH . 
P 6 HOH B 12 1012 147 HOH HOH . 
P 6 HOH B 13 1013 53 HOH HOH . 
P 6 HOH B 14 1014 59 HOH HOH . 
P 6 HOH B 15 1015 12 HOH HOH . 
P 6 HOH B 16 1016 134 HOH HOH . 
P 6 HOH B 17 1017 121 HOH HOH . 
P 6 HOH B 18 1018 114 HOH HOH . 
P 6 HOH B 19 1019 129 HOH HOH . 
P 6 HOH B 20 1020 65 HOH HOH . 
P 6 HOH B 21 1021 154 HOH HOH . 
P 6 HOH B 22 1022 69 HOH HOH . 
P 6 HOH B 23 1023 34 HOH HOH . 
P 6 HOH B 24 1024 57 HOH HOH . 
P 6 HOH B 25 1025 160 HOH HOH . 
P 6 HOH B 26 1026 66 HOH HOH . 
P 6 HOH B 27 1027 45 HOH HOH . 
P 6 HOH B 28 1028 32 HOH HOH . 
P 6 HOH B 29 1029 19 HOH HOH . 
P 6 HOH B 30 1030 96 HOH HOH . 
P 6 HOH B 31 1031 55 HOH HOH . 
P 6 HOH B 32 1032 82 HOH HOH . 
P 6 HOH B 33 1033 143 HOH HOH . 
P 6 HOH B 34 1034 41 HOH HOH . 
P 6 HOH B 35 1035 102 HOH HOH . 
P 6 HOH B 36 1036 60 HOH HOH . 
P 6 HOH B 37 1037 142 HOH HOH . 
P 6 HOH B 38 1038 30 HOH HOH . 
P 6 HOH B 39 1039 185 HOH HOH . 
P 6 HOH B 40 1040 108 HOH HOH . 
P 6 HOH B 41 1041 89 HOH HOH . 
P 6 HOH B 42 1042 84 HOH HOH . 
P 6 HOH B 43 1043 38 HOH HOH . 
P 6 HOH B 44 1044 166 HOH HOH . 
P 6 HOH B 45 1045 165 HOH HOH . 
P 6 HOH B 46 1046 120 HOH HOH . 
P 6 HOH B 47 1047 118 HOH HOH . 
P 6 HOH B 48 1048 42 HOH HOH . 
P 6 HOH B 49 1049 9 HOH HOH . 
P 6 HOH B 50 1050 109 HOH HOH . 
P 6 HOH B 51 1051 56 HOH HOH . 
P 6 HOH B 52 1052 167 HOH HOH . 
P 6 HOH B 53 1053 76 HOH HOH . 
P 6 HOH B 54 1054 23 HOH HOH . 
P 6 HOH B 55 1055 149 HOH HOH . 
P 6 HOH B 56 1056 18 HOH HOH . 
P 6 HOH B 57 1057 145 HOH HOH . 
P 6 HOH B 58 1058 29 HOH HOH . 
P 6 HOH B 59 1059 50 HOH HOH . 
P 6 HOH B 60 1060 16 HOH HOH . 
P 6 HOH B 61 1061 10 HOH HOH . 
P 6 HOH B 62 1062 36 HOH HOH . 
P 6 HOH B 63 1063 111 HOH HOH . 
P 6 HOH B 64 1064 68 HOH HOH . 
P 6 HOH B 65 1065 92 HOH HOH . 
P 6 HOH B 66 1066 107 HOH HOH . 
P 6 HOH B 67 1067 152 HOH HOH . 
P 6 HOH B 68 1068 74 HOH HOH . 
P 6 HOH B 69 1069 150 HOH HOH . 
P 6 HOH B 70 1070 138 HOH HOH . 
P 6 HOH B 71 1071 172 HOH HOH . 
P 6 HOH B 72 1072 115 HOH HOH . 
P 6 HOH B 73 1073 91 HOH HOH . 
P 6 HOH B 74 1074 156 HOH HOH . 
P 6 HOH B 75 1075 155 HOH HOH . 
P 6 HOH B 76 1076 122 HOH HOH . 
P 6 HOH B 77 1077 130 HOH HOH . 
P 6 HOH B 78 1078 44 HOH HOH . 
P 6 HOH B 79 1079 103 HOH HOH . 
P 6 HOH B 80 1080 182 HOH HOH . 
P 6 HOH B 81 1081 39 HOH HOH . 
P 6 HOH B 82 1082 93 HOH HOH . 
P 6 HOH B 83 1083 112 HOH HOH . 
P 6 HOH B 84 1084 131 HOH HOH . 
P 6 HOH B 85 1085 79 HOH HOH . 
P 6 HOH B 86 1086 175 HOH HOH . 
P 6 HOH B 87 1087 126 HOH HOH . 
P 6 HOH B 88 1088 141 HOH HOH . 
P 6 HOH B 89 1089 186 HOH HOH . 
P 6 HOH B 90 1090 180 HOH HOH . 
P 6 HOH B 91 1091 135 HOH HOH . 
P 6 HOH B 92 1092 184 HOH HOH . 
P 6 HOH B 93 1093 148 HOH HOH . 
P 6 HOH B 94 1094 181 HOH HOH . 
P 6 HOH B 95 1095 183 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 4 77.111 81.346 38.636 1 57.65 ? C1 GOL 903 B 1 
HETATM 2 O O1 GOL . . . J 4 75.748 81.434 39.067 1 58.25 ? O1 GOL 903 B 1 
HETATM 3 C C2 GOL . . . J 4 77.24 81.887 37.217 1 56.59 ? C2 GOL 903 B 1 
HETATM 4 O O2 GOL . . . J 4 76.414 81.125 36.327 1 57.81 ? O2 GOL 903 B 1 
HETATM 5 C C3 GOL . . . J 4 78.695 81.805 36.77 1 55.56 ? C3 GOL 903 B 1 
HETATM 6 O O3 GOL . . . J 4 78.842 82.389 35.47 1 54.2 ? O3 GOL 903 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#