data_6GUY # _model_server_result.job_id R35fac35IY6q_oFqEWYH4Q _model_server_result.datetime_utc '2024-11-13 05:32:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6guy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 6GUY # _exptl.entry_id 6GUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GUY _cell.length_a 46.294 _cell.length_b 48.271 _cell.length_c 104.902 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 7 1_555 A N ALA 2 A ALA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale2 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.4 ? covale ? covale3 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.411 ? metalc ? metalc1 A OD2 ASP 5 A ASP 11 1_555 M CA CA . A CA 713 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc2 A OD1 ASP 5 A ASP 11 1_555 N NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 A OD1 ASP 9 A ASP 15 1_555 N NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc4 A O ARG 11 A ARG 17 1_555 N NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc5 A OG1 THR 14 A THR 20 1_555 N NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc6 A OD1 ASP 40 A ASP 46 1_555 M CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc7 A OD2 ASP 40 A ASP 46 1_555 M CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc8 A OD2 ASP 42 A ASP 48 1_555 M CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc9 A O LEU 234 A LEU 240 1_555 M CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc10 R O HOH . A HOH 586 1_555 M CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc11 R O HOH . A HOH 589 1_555 M CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 370 n n C1 C6 RET sing 371 n n C1 C16 RET sing 372 n n C1 C17 RET sing 373 n n C2 C3 RET sing 374 n n C2 H21 RET sing 375 n n C2 H22 RET sing 376 n n C3 C4 RET sing 377 n n C3 H31 RET sing 378 n n C3 H32 RET sing 379 n n C4 C5 RET sing 380 n n C4 H41 RET sing 381 n n C4 H42 RET sing 382 n n C5 C6 RET doub 383 n n C5 C18 RET sing 384 n n C6 C7 RET sing 385 n n C7 C8 RET doub 386 e n C7 H7 RET sing 387 n n C8 C9 RET sing 388 n n C8 H8 RET sing 389 n n C9 C10 RET doub 390 e n C9 C19 RET sing 391 n n C10 C11 RET sing 392 n n C10 H10 RET sing 393 n n C11 C12 RET doub 394 e n C11 H11 RET sing 395 n n C12 C13 RET sing 396 n n C12 H12 RET sing 397 n n C13 C14 RET doub 398 e n C13 C20 RET sing 399 n n C14 C15 RET sing 400 n n C14 H14 RET sing 401 n n C15 O1 RET doub 402 n n C15 H15 RET sing 403 n n C16 H161 RET sing 404 n n C16 H162 RET sing 405 n n C16 H163 RET sing 406 n n C17 H171 RET sing 407 n n C17 H172 RET sing 408 n n C17 H173 RET sing 409 n n C18 H181 RET sing 410 n n C18 H182 RET sing 411 n n C18 H183 RET sing 412 n n C19 H191 RET sing 413 n n C19 H192 RET sing 414 n n C19 H193 RET sing 415 n n C20 H201 RET sing 416 n n C20 H202 RET sing 417 n n C20 H203 RET sing 418 n n # _atom_sites.entry_id 6GUY _atom_sites.fract_transf_matrix[1][1] 0.021601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 R16 A 1 302 302 R16 R16 . D 3 R16 A 1 303 303 R16 R16 . E 3 R16 A 1 304 304 R16 R16 . F 3 R16 A 1 305 305 R16 R16 . G 4 DD9 A 1 308 308 DD9 DD9 . H 4 DD9 A 1 309 309 DD9 DD9 . I 4 DD9 A 1 310 310 DD9 DD9 . J 4 DD9 A 1 311 311 DD9 DD9 . K 4 DD9 A 1 312 312 DD9 DD9 . L 3 R16 A 1 314 314 R16 R16 . M 5 CA A 1 713 713 CA CA . N 6 NA A 1 714 714 NA NA . O 7 CL A 1 715 715 CL CL . P 7 CL A 1 716 716 CL CL . Q 7 CL A 1 717 717 CL CL . R 8 HOH A 1 401 401 HOH HOH . R 8 HOH A 2 402 402 HOH HOH . R 8 HOH A 3 404 404 HOH HOH . R 8 HOH A 4 406 406 HOH HOH . R 8 HOH A 5 407 407 HOH HOH . R 8 HOH A 6 411 411 HOH HOH . R 8 HOH A 7 501 501 HOH HOH . R 8 HOH A 8 513 513 HOH HOH . R 8 HOH A 9 520 520 HOH HOH . R 8 HOH A 10 531 531 HOH HOH . R 8 HOH A 11 538 538 HOH HOH . R 8 HOH A 12 545 545 HOH HOH . R 8 HOH A 13 546 546 HOH HOH . R 8 HOH A 14 547 547 HOH HOH . R 8 HOH A 15 549 549 HOH HOH . R 8 HOH A 16 552 552 HOH HOH . R 8 HOH A 17 555 555 HOH HOH . R 8 HOH A 18 558 558 HOH HOH . R 8 HOH A 19 561 561 HOH HOH . R 8 HOH A 20 568 568 HOH HOH . R 8 HOH A 21 575 575 HOH HOH . R 8 HOH A 22 586 586 HOH HOH . R 8 HOH A 23 587 587 HOH HOH . R 8 HOH A 24 588 588 HOH HOH . R 8 HOH A 25 589 589 HOH HOH . R 8 HOH A 26 590 590 HOH HOH . R 8 HOH A 27 591 591 HOH HOH . R 8 HOH A 28 592 592 HOH HOH . R 8 HOH A 29 593 593 HOH HOH . R 8 HOH A 30 594 594 HOH HOH . R 8 HOH A 31 595 595 HOH HOH . R 8 HOH A 32 596 596 HOH HOH . R 8 HOH A 33 598 598 HOH HOH . R 8 HOH A 34 601 601 HOH HOH . R 8 HOH A 35 602 602 HOH HOH . R 8 HOH A 36 622 622 HOH HOH . R 8 HOH A 37 625 625 HOH HOH . R 8 HOH A 38 628 628 HOH HOH . R 8 HOH A 39 629 629 HOH HOH . R 8 HOH A 40 633 633 HOH HOH . R 8 HOH A 41 635 635 HOH HOH . R 8 HOH A 42 636 636 HOH HOH . R 8 HOH A 43 639 639 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . A . B 2 -6.596 -0.264 -23.479 0.2 31.33 ? C1 RET 300 A 1 HETATM 2 C C1 RET . B . B 2 -6.908 -0.272 -23.42 0.8 31.38 ? C1 RET 300 A 1 HETATM 3 C C2 RET . A . B 2 -7.741 -0.221 -22.284 0.2 30.91 ? C2 RET 300 A 1 HETATM 4 C C2 RET . B . B 2 -7.999 -0.245 -22.177 0.8 30.57 ? C2 RET 300 A 1 HETATM 5 C C3 RET . A . B 2 -8.993 0.039 -22.727 0.2 31.48 ? C3 RET 300 A 1 HETATM 6 C C3 RET . B . B 2 -9.266 0.024 -22.568 0.8 31.5 ? C3 RET 300 A 1 HETATM 7 C C4 RET . A . B 2 -9.471 -1.107 -23.812 0.2 32.32 ? C4 RET 300 A 1 HETATM 8 C C4 RET . B . B 2 -9.804 -1.113 -23.634 0.8 32.97 ? C4 RET 300 A 1 HETATM 9 C C5 RET . A . B 2 -8.598 -1.132 -24.958 0.2 30.86 ? C5 RET 300 A 1 HETATM 10 C C5 RET . B . B 2 -8.964 -1.178 -24.802 0.8 30.59 ? C5 RET 300 A 1 HETATM 11 C C6 RET . A . B 2 -7.06 -0.759 -24.778 0.2 30.99 ? C6 RET 300 A 1 HETATM 12 C C6 RET . B . B 2 -7.429 -0.788 -24.688 0.8 30.95 ? C6 RET 300 A 1 HETATM 13 C C7 RET . A . B 2 -6.131 -0.958 -26.044 0.2 30.45 ? C7 RET 300 A 1 HETATM 14 C C7 RET . B . B 2 -6.573 -1.005 -25.999 0.8 30.32 ? C7 RET 300 A 1 HETATM 15 C C8 RET . A . B 2 -4.778 -0.691 -26.09 0.2 30.04 ? C8 RET 300 A 1 HETATM 16 C C8 RET . B . B 2 -5.232 -0.723 -26.092 0.8 29.98 ? C8 RET 300 A 1 HETATM 17 C C9 RET . A . B 2 -3.951 -0.923 -27.38 0.2 29.83 ? C9 RET 300 A 1 HETATM 18 C C9 RET . B . B 2 -4.42 -0.95 -27.385 0.8 29.46 ? C9 RET 300 A 1 HETATM 19 C C10 RET . A . B 2 -2.626 -0.645 -27.373 0.2 29.8 ? C10 RET 300 A 1 HETATM 20 C C10 RET . B . B 2 -3.111 -0.631 -27.337 0.8 30.3 ? C10 RET 300 A 1 HETATM 21 C C11 RET . A . B 2 -1.765 -0.857 -28.62 0.2 29.41 ? C11 RET 300 A 1 HETATM 22 C C11 RET . B . B 2 -2.163 -0.79 -28.519 0.8 29.59 ? C11 RET 300 A 1 HETATM 23 C C12 RET . A . B 2 -0.452 -0.571 -28.577 0.2 28.9 ? C12 RET 300 A 1 HETATM 24 C C12 RET . B . B 2 -0.896 -0.421 -28.285 0.8 28.89 ? C12 RET 300 A 1 HETATM 25 C C13 RET . A . B 2 0.428 -0.781 -29.838 0.2 28.77 ? C13 RET 300 A 1 HETATM 26 C C13 RET . B . B 2 0.201 -0.514 -29.369 0.8 29.12 ? C13 RET 300 A 1 HETATM 27 C C14 RET . A . B 2 1.737 -0.502 -29.813 0.2 28.76 ? C14 RET 300 A 1 HETATM 28 C C14 RET . B . B 2 1.438 -0.125 -29.052 0.8 28.51 ? C14 RET 300 A 1 HETATM 29 C C15 RET . A . B 2 2.395 0.033 -28.533 0.2 28.36 ? C15 RET 300 A 1 HETATM 30 C C15 RET . B . B 2 2.543 -0.203 -30.105 0.8 30.32 ? C15 RET 300 A 1 HETATM 31 C C16 RET . A . B 2 -6.059 1.211 -23.635 0.2 31.26 ? C16 RET 300 A 1 HETATM 32 C C16 RET . B . B 2 -6.407 1.212 -23.615 0.8 31.44 ? C16 RET 300 A 1 HETATM 33 C C17 RET . A . B 2 -5.46 -1.181 -22.92 0.2 31.69 ? C17 RET 300 A 1 HETATM 34 C C17 RET . B . B 2 -5.729 -1.159 -22.901 0.8 31.88 ? C17 RET 300 A 1 HETATM 35 C C18 RET . A . B 2 -9.168 -1.426 -26.359 0.2 31.19 ? C18 RET 300 A 1 HETATM 36 C C18 RET . B . B 2 -9.553 -1.526 -26.181 0.8 30.99 ? C18 RET 300 A 1 HETATM 37 C C19 RET . A . B 2 -4.64 -1.469 -28.672 0.2 29.84 ? C19 RET 300 A 1 HETATM 38 C C19 RET . B . B 2 -5.08 -1.519 -28.682 0.8 29.47 ? C19 RET 300 A 1 HETATM 39 C C20 RET . A . B 2 -0.228 -1.331 -31.162 0.2 28.11 ? C20 RET 300 A 1 HETATM 40 C C20 RET . B . B 2 -0.13 -1.054 -30.816 0.8 27.29 ? C20 RET 300 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 40 #