data_6GUY # _model_server_result.job_id EFH1Us_uYJuT3n2vYnVbHQ _model_server_result.datetime_utc '2024-11-22 14:21:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6guy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":311}' # _entry.id 6GUY # _exptl.entry_id 6GUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 128.255 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description nonane _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GUY _cell.length_a 46.294 _cell.length_b 48.271 _cell.length_c 104.902 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 7 1_555 A N ALA 2 A ALA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale2 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.4 ? covale ? covale3 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.411 ? metalc ? metalc1 A OD2 ASP 5 A ASP 11 1_555 M CA CA . A CA 713 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc2 A OD1 ASP 5 A ASP 11 1_555 N NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 A OD1 ASP 9 A ASP 15 1_555 N NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc4 A O ARG 11 A ARG 17 1_555 N NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc5 A OG1 THR 14 A THR 20 1_555 N NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc6 A OD1 ASP 40 A ASP 46 1_555 M CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc7 A OD2 ASP 40 A ASP 46 1_555 M CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc8 A OD2 ASP 42 A ASP 48 1_555 M CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc9 A O LEU 234 A LEU 240 1_555 M CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc10 R O HOH . A HOH 586 1_555 M CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc11 R O HOH . A HOH 589 1_555 M CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? # _chem_comp.formula 'C9 H20' _chem_comp.formula_weight 128.255 _chem_comp.id DD9 _chem_comp.mon_nstd_flag . _chem_comp.name nonane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 DD9 sing 83 n n C1 H1 DD9 sing 84 n n C1 H1A DD9 sing 85 n n C1 H1B DD9 sing 86 n n C3 C2 DD9 sing 87 n n C2 H2 DD9 sing 88 n n C2 H2A DD9 sing 89 n n C4 C3 DD9 sing 90 n n C3 H3 DD9 sing 91 n n C3 H3A DD9 sing 92 n n C5 C4 DD9 sing 93 n n C4 H4 DD9 sing 94 n n C4 H4A DD9 sing 95 n n C6 C5 DD9 sing 96 n n C5 H5 DD9 sing 97 n n C5 H5A DD9 sing 98 n n C7 C6 DD9 sing 99 n n C6 H6 DD9 sing 100 n n C6 H6A DD9 sing 101 n n C8 C7 DD9 sing 102 n n C7 H7 DD9 sing 103 n n C7 H7A DD9 sing 104 n n C9 C8 DD9 sing 105 n n C8 H8 DD9 sing 106 n n C8 H8A DD9 sing 107 n n C9 H9 DD9 sing 108 n n C9 H9A DD9 sing 109 n n C9 H9B DD9 sing 110 n n # _atom_sites.entry_id 6GUY _atom_sites.fract_transf_matrix[1][1] 0.021601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 R16 A 1 302 302 R16 R16 . D 3 R16 A 1 303 303 R16 R16 . E 3 R16 A 1 304 304 R16 R16 . F 3 R16 A 1 305 305 R16 R16 . G 4 DD9 A 1 308 308 DD9 DD9 . H 4 DD9 A 1 309 309 DD9 DD9 . I 4 DD9 A 1 310 310 DD9 DD9 . J 4 DD9 A 1 311 311 DD9 DD9 . K 4 DD9 A 1 312 312 DD9 DD9 . L 3 R16 A 1 314 314 R16 R16 . M 5 CA A 1 713 713 CA CA . N 6 NA A 1 714 714 NA NA . O 7 CL A 1 715 715 CL CL . P 7 CL A 1 716 716 CL CL . Q 7 CL A 1 717 717 CL CL . R 8 HOH A 1 401 401 HOH HOH . R 8 HOH A 2 402 402 HOH HOH . R 8 HOH A 3 404 404 HOH HOH . R 8 HOH A 4 406 406 HOH HOH . R 8 HOH A 5 407 407 HOH HOH . R 8 HOH A 6 411 411 HOH HOH . R 8 HOH A 7 501 501 HOH HOH . R 8 HOH A 8 513 513 HOH HOH . R 8 HOH A 9 520 520 HOH HOH . R 8 HOH A 10 531 531 HOH HOH . R 8 HOH A 11 538 538 HOH HOH . R 8 HOH A 12 545 545 HOH HOH . R 8 HOH A 13 546 546 HOH HOH . R 8 HOH A 14 547 547 HOH HOH . R 8 HOH A 15 549 549 HOH HOH . R 8 HOH A 16 552 552 HOH HOH . R 8 HOH A 17 555 555 HOH HOH . R 8 HOH A 18 558 558 HOH HOH . R 8 HOH A 19 561 561 HOH HOH . R 8 HOH A 20 568 568 HOH HOH . R 8 HOH A 21 575 575 HOH HOH . R 8 HOH A 22 586 586 HOH HOH . R 8 HOH A 23 587 587 HOH HOH . R 8 HOH A 24 588 588 HOH HOH . R 8 HOH A 25 589 589 HOH HOH . R 8 HOH A 26 590 590 HOH HOH . R 8 HOH A 27 591 591 HOH HOH . R 8 HOH A 28 592 592 HOH HOH . R 8 HOH A 29 593 593 HOH HOH . R 8 HOH A 30 594 594 HOH HOH . R 8 HOH A 31 595 595 HOH HOH . R 8 HOH A 32 596 596 HOH HOH . R 8 HOH A 33 598 598 HOH HOH . R 8 HOH A 34 601 601 HOH HOH . R 8 HOH A 35 602 602 HOH HOH . R 8 HOH A 36 622 622 HOH HOH . R 8 HOH A 37 625 625 HOH HOH . R 8 HOH A 38 628 628 HOH HOH . R 8 HOH A 39 629 629 HOH HOH . R 8 HOH A 40 633 633 HOH HOH . R 8 HOH A 41 635 635 HOH HOH . R 8 HOH A 42 636 636 HOH HOH . R 8 HOH A 43 639 639 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DD9 . . . J 4 17.46 -11.443 -20.24 1 52.69 ? C1 DD9 311 A 1 HETATM 2 C C2 DD9 . . . J 4 18.598 -10.976 -19.334 1 60.58 ? C2 DD9 311 A 1 HETATM 3 C C3 DD9 . . . J 4 18.021 -10.454 -18.021 1 55.59 ? C3 DD9 311 A 1 HETATM 4 C C4 DD9 . . . J 4 19.151 -9.943 -17.131 1 58.15 ? C4 DD9 311 A 1 HETATM 5 C C5 DD9 . . . J 4 18.58 -9.517 -15.781 1 53.95 ? C5 DD9 311 A 1 HETATM 6 C C6 DD9 . . . J 4 19.717 -9.327 -14.78 1 53.68 ? C6 DD9 311 A 1 HETATM 7 C C7 DD9 . . . J 4 19.138 -9.191 -13.373 1 54.47 ? C7 DD9 311 A 1 HETATM 8 C C8 DD9 . . . J 4 20.274 -9.046 -12.364 1 55.08 ? C8 DD9 311 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #