data_6GUZ # _model_server_result.job_id wihIOvkQTW349mlR_Bs7Pg _model_server_result.datetime_utc '2024-11-13 03:48:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6guz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6GUZ # _exptl.entry_id 6GUZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 128.255 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description nonane _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GUZ _cell.length_a 46.254 _cell.length_b 48.302 _cell.length_c 104.835 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GUZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 7 1_555 A N ALA 2 A ALA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.255 ? covale ? covale3 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.253 ? metalc ? metalc1 A OD2 ASP 5 A ASP 11 1_555 K CA CA . A CA 713 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc2 A OD1 ASP 5 A ASP 11 1_555 L NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc3 A OD1 ASP 9 A ASP 15 1_555 L NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc4 A O ARG 11 A ARG 17 1_555 L NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.193 ? metalc ? metalc5 A OG1 THR 14 A THR 20 1_555 L NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc6 A OD1 ASP 40 A ASP 46 1_555 K CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc7 A OD2 ASP 40 A ASP 46 1_555 K CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc8 A OD2 ASP 42 A ASP 48 1_555 K CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc9 A O LEU 234 A LEU 240 1_555 K CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc10 P O HOH . A HOH 586 1_555 K CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc11 P O HOH . A HOH 589 1_555 K CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? # _chem_comp.formula 'C9 H20' _chem_comp.formula_weight 128.255 _chem_comp.id DD9 _chem_comp.mon_nstd_flag . _chem_comp.name nonane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 DD9 sing 114 n n C1 H1 DD9 sing 115 n n C1 H1A DD9 sing 116 n n C1 H1B DD9 sing 117 n n C3 C2 DD9 sing 118 n n C2 H2 DD9 sing 119 n n C2 H2A DD9 sing 120 n n C4 C3 DD9 sing 121 n n C3 H3 DD9 sing 122 n n C3 H3A DD9 sing 123 n n C5 C4 DD9 sing 124 n n C4 H4 DD9 sing 125 n n C4 H4A DD9 sing 126 n n C6 C5 DD9 sing 127 n n C5 H5 DD9 sing 128 n n C5 H5A DD9 sing 129 n n C7 C6 DD9 sing 130 n n C6 H6 DD9 sing 131 n n C6 H6A DD9 sing 132 n n C8 C7 DD9 sing 133 n n C7 H7 DD9 sing 134 n n C7 H7A DD9 sing 135 n n C9 C8 DD9 sing 136 n n C8 H8 DD9 sing 137 n n C8 H8A DD9 sing 138 n n C9 H9 DD9 sing 139 n n C9 H9A DD9 sing 140 n n C9 H9B DD9 sing 141 n n # _atom_sites.entry_id 6GUZ _atom_sites.fract_transf_matrix[1][1] 0.02162 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 R16 A 1 302 302 R16 R16 . D 4 DD9 A 1 303 303 DD9 DD9 . E 3 R16 A 1 304 304 R16 R16 . F 4 DD9 A 1 309 309 DD9 DD9 . G 4 DD9 A 1 310 310 DD9 DD9 . H 4 DD9 A 1 311 311 DD9 DD9 . I 4 DD9 A 1 312 312 DD9 DD9 . J 5 D10 A 1 317 317 D10 D10 . K 6 CA A 1 713 713 CA CA . L 7 NA A 1 714 714 NA NA . M 8 CL A 1 715 715 CL CL . N 8 CL A 1 716 716 CL CL . O 8 CL A 1 717 717 CL CL . P 9 HOH A 1 401 401 HOH HOH . P 9 HOH A 2 402 402 HOH HOH . P 9 HOH A 3 404 404 HOH HOH . P 9 HOH A 4 406 406 HOH HOH . P 9 HOH A 5 407 407 HOH HOH . P 9 HOH A 6 411 411 HOH HOH . P 9 HOH A 7 501 501 HOH HOH . P 9 HOH A 8 512 512 HOH HOH . P 9 HOH A 9 513 513 HOH HOH . P 9 HOH A 10 520 520 HOH HOH . P 9 HOH A 11 522 522 HOH HOH . P 9 HOH A 12 527 527 HOH HOH . P 9 HOH A 13 545 545 HOH HOH . P 9 HOH A 14 547 547 HOH HOH . P 9 HOH A 15 559 559 HOH HOH . P 9 HOH A 16 568 568 HOH HOH . P 9 HOH A 17 575 575 HOH HOH . P 9 HOH A 18 586 586 HOH HOH . P 9 HOH A 19 587 587 HOH HOH . P 9 HOH A 20 588 588 HOH HOH . P 9 HOH A 21 589 589 HOH HOH . P 9 HOH A 22 590 590 HOH HOH . P 9 HOH A 23 591 591 HOH HOH . P 9 HOH A 24 592 592 HOH HOH . P 9 HOH A 25 593 593 HOH HOH . P 9 HOH A 26 594 594 HOH HOH . P 9 HOH A 27 595 595 HOH HOH . P 9 HOH A 28 596 596 HOH HOH . P 9 HOH A 29 598 598 HOH HOH . P 9 HOH A 30 599 599 HOH HOH . P 9 HOH A 31 600 600 HOH HOH . P 9 HOH A 32 601 601 HOH HOH . P 9 HOH A 33 602 602 HOH HOH . P 9 HOH A 34 603 603 HOH HOH . P 9 HOH A 35 604 604 HOH HOH . P 9 HOH A 36 622 622 HOH HOH . P 9 HOH A 37 625 625 HOH HOH . P 9 HOH A 38 626 626 HOH HOH . P 9 HOH A 39 627 627 HOH HOH . P 9 HOH A 40 628 628 HOH HOH . P 9 HOH A 41 629 629 HOH HOH . P 9 HOH A 42 630 630 HOH HOH . P 9 HOH A 43 632 632 HOH HOH . P 9 HOH A 44 633 633 HOH HOH . P 9 HOH A 45 634 634 HOH HOH . P 9 HOH A 46 635 635 HOH HOH . P 9 HOH A 47 636 636 HOH HOH . P 9 HOH A 48 637 637 HOH HOH . P 9 HOH A 49 638 638 HOH HOH . P 9 HOH A 50 639 639 HOH HOH . P 9 HOH A 51 641 641 HOH HOH . P 9 HOH A 52 642 642 HOH HOH . P 9 HOH A 53 643 643 HOH HOH . P 9 HOH A 54 644 644 HOH HOH . P 9 HOH A 55 645 645 HOH HOH . P 9 HOH A 56 646 646 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DD9 . . . D 4 -11.171 -11.612 -40.925 1 59 ? C1 DD9 303 A 1 HETATM 2 C C2 DD9 . . . D 4 -12.516 -10.944 -41.076 1 57.88 ? C2 DD9 303 A 1 HETATM 3 C C3 DD9 . . . D 4 -13.381 -10.953 -39.832 1 57.65 ? C3 DD9 303 A 1 HETATM 4 C C4 DD9 . . . D 4 -14.26 -9.723 -39.657 1 57.03 ? C4 DD9 303 A 1 HETATM 5 C C5 DD9 . . . D 4 -14.352 -9.209 -38.235 1 56.6 ? C5 DD9 303 A 1 HETATM 6 C C6 DD9 . . . D 4 -13.154 -8.407 -37.781 1 56.17 ? C6 DD9 303 A 1 HETATM 7 C C7 DD9 . . . D 4 -13.367 -7.632 -36.497 1 51.2 ? C7 DD9 303 A 1 HETATM 8 C C8 DD9 . . . D 4 -12.586 -8.15 -35.304 1 53.81 ? C8 DD9 303 A 1 HETATM 9 C C9 DD9 . . . D 4 -13.369 -8.207 -34.011 1 53.63 ? C9 DD9 303 A 1 HETATM 10 H H1 DD9 . . . D 4 -10.681 -11.197 -40.194 1 58.64 ? H1 DD9 303 A 1 HETATM 11 H H1A DD9 . . . D 4 -11.297 -12.558 -40.734 1 58.64 ? H1A DD9 303 A 1 HETATM 12 H H1B DD9 . . . D 4 -10.664 -11.514 -41.75 1 58.64 ? H1B DD9 303 A 1 HETATM 13 H H2 DD9 . . . D 4 -13.008 -11.391 -41.8 1 58.08 ? H2 DD9 303 A 1 HETATM 14 H H2A DD9 . . . D 4 -12.371 -10.013 -41.351 1 58.08 ? H2A DD9 303 A 1 HETATM 15 H H3 DD9 . . . D 4 -12.798 -11.036 -39.047 1 57.55 ? H3 DD9 303 A 1 HETATM 16 H H3A DD9 . . . D 4 -13.956 -11.747 -39.858 1 57.55 ? H3A DD9 303 A 1 HETATM 17 H H4 DD9 . . . D 4 -15.164 -9.939 -39.969 1 57.06 ? H4 DD9 303 A 1 HETATM 18 H H4A DD9 . . . D 4 -13.915 -9.004 -40.227 1 57.06 ? H4A DD9 303 A 1 HETATM 19 H H5 DD9 . . . D 4 -15.153 -8.649 -38.157 1 56.58 ? H5 DD9 303 A 1 HETATM 20 H H5A DD9 . . . D 4 -14.464 -9.974 -37.632 1 56.59 ? H5A DD9 303 A 1 HETATM 21 H H6 DD9 . . . D 4 -12.395 -9.017 -37.661 1 55.04 ? H6 DD9 303 A 1 HETATM 22 H H6A DD9 . . . D 4 -12.914 -7.774 -38.49 1 55.05 ? H6A DD9 303 A 1 HETATM 23 H H7 DD9 . . . D 4 -14.322 -7.648 -36.275 1 52.95 ? H7 DD9 303 A 1 HETATM 24 H H7A DD9 . . . D 4 -13.115 -6.697 -36.651 1 52.93 ? H7A DD9 303 A 1 HETATM 25 H H8 DD9 . . . D 4 -12.261 -9.052 -35.512 1 53.1 ? H8 DD9 303 A 1 HETATM 26 H H8A DD9 . . . D 4 -11.801 -7.575 -35.172 1 53.12 ? H8A DD9 303 A 1 HETATM 27 H H9 DD9 . . . D 4 -14.016 -8.933 -34.053 1 53.66 ? H9 DD9 303 A 1 HETATM 28 H H9A DD9 . . . D 4 -13.838 -7.365 -33.876 1 53.66 ? H9A DD9 303 A 1 HETATM 29 H H9B DD9 . . . D 4 -12.761 -8.36 -33.268 1 53.63 ? H9B DD9 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #