data_6GUZ # _model_server_result.job_id YK-Ou_JTPOp65vhmq2CWZA _model_server_result.datetime_utc '2024-11-22 07:18:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6guz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":714}' # _entry.id 6GUZ # _exptl.entry_id 6GUZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GUZ _cell.length_a 46.254 _cell.length_b 48.302 _cell.length_c 104.835 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GUZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 7 1_555 A N ALA 2 A ALA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.255 ? covale ? covale3 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.253 ? metalc ? metalc1 A OD2 ASP 5 A ASP 11 1_555 K CA CA . A CA 713 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc2 A OD1 ASP 5 A ASP 11 1_555 L NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc3 A OD1 ASP 9 A ASP 15 1_555 L NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc4 A O ARG 11 A ARG 17 1_555 L NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.193 ? metalc ? metalc5 A OG1 THR 14 A THR 20 1_555 L NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc6 A OD1 ASP 40 A ASP 46 1_555 K CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc7 A OD2 ASP 40 A ASP 46 1_555 K CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc8 A OD2 ASP 42 A ASP 48 1_555 K CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc9 A O LEU 234 A LEU 240 1_555 K CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc10 P O HOH . A HOH 586 1_555 K CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc11 P O HOH . A HOH 589 1_555 K CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6GUZ _atom_sites.fract_transf_matrix[1][1] 0.02162 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 R16 A 1 302 302 R16 R16 . D 4 DD9 A 1 303 303 DD9 DD9 . E 3 R16 A 1 304 304 R16 R16 . F 4 DD9 A 1 309 309 DD9 DD9 . G 4 DD9 A 1 310 310 DD9 DD9 . H 4 DD9 A 1 311 311 DD9 DD9 . I 4 DD9 A 1 312 312 DD9 DD9 . J 5 D10 A 1 317 317 D10 D10 . K 6 CA A 1 713 713 CA CA . L 7 NA A 1 714 714 NA NA . M 8 CL A 1 715 715 CL CL . N 8 CL A 1 716 716 CL CL . O 8 CL A 1 717 717 CL CL . P 9 HOH A 1 401 401 HOH HOH . P 9 HOH A 2 402 402 HOH HOH . P 9 HOH A 3 404 404 HOH HOH . P 9 HOH A 4 406 406 HOH HOH . P 9 HOH A 5 407 407 HOH HOH . P 9 HOH A 6 411 411 HOH HOH . P 9 HOH A 7 501 501 HOH HOH . P 9 HOH A 8 512 512 HOH HOH . P 9 HOH A 9 513 513 HOH HOH . P 9 HOH A 10 520 520 HOH HOH . P 9 HOH A 11 522 522 HOH HOH . P 9 HOH A 12 527 527 HOH HOH . P 9 HOH A 13 545 545 HOH HOH . P 9 HOH A 14 547 547 HOH HOH . P 9 HOH A 15 559 559 HOH HOH . P 9 HOH A 16 568 568 HOH HOH . P 9 HOH A 17 575 575 HOH HOH . P 9 HOH A 18 586 586 HOH HOH . P 9 HOH A 19 587 587 HOH HOH . P 9 HOH A 20 588 588 HOH HOH . P 9 HOH A 21 589 589 HOH HOH . P 9 HOH A 22 590 590 HOH HOH . P 9 HOH A 23 591 591 HOH HOH . P 9 HOH A 24 592 592 HOH HOH . P 9 HOH A 25 593 593 HOH HOH . P 9 HOH A 26 594 594 HOH HOH . P 9 HOH A 27 595 595 HOH HOH . P 9 HOH A 28 596 596 HOH HOH . P 9 HOH A 29 598 598 HOH HOH . P 9 HOH A 30 599 599 HOH HOH . P 9 HOH A 31 600 600 HOH HOH . P 9 HOH A 32 601 601 HOH HOH . P 9 HOH A 33 602 602 HOH HOH . P 9 HOH A 34 603 603 HOH HOH . P 9 HOH A 35 604 604 HOH HOH . P 9 HOH A 36 622 622 HOH HOH . P 9 HOH A 37 625 625 HOH HOH . P 9 HOH A 38 626 626 HOH HOH . P 9 HOH A 39 627 627 HOH HOH . P 9 HOH A 40 628 628 HOH HOH . P 9 HOH A 41 629 629 HOH HOH . P 9 HOH A 42 630 630 HOH HOH . P 9 HOH A 43 632 632 HOH HOH . P 9 HOH A 44 633 633 HOH HOH . P 9 HOH A 45 634 634 HOH HOH . P 9 HOH A 46 635 635 HOH HOH . P 9 HOH A 47 636 636 HOH HOH . P 9 HOH A 48 637 637 HOH HOH . P 9 HOH A 49 638 638 HOH HOH . P 9 HOH A 50 639 639 HOH HOH . P 9 HOH A 51 641 641 HOH HOH . P 9 HOH A 52 642 642 HOH HOH . P 9 HOH A 53 643 643 HOH HOH . P 9 HOH A 54 644 644 HOH HOH . P 9 HOH A 55 645 645 HOH HOH . P 9 HOH A 56 646 646 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 7 _atom_site.Cartn_x 13.436 _atom_site.Cartn_y -0.831 _atom_site.Cartn_z -9.298 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 714 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 102 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 1167 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #