data_6GVA # _model_server_result.job_id QXtsjQk-B7cSSylCgOhNeA _model_server_result.datetime_utc '2024-11-12 21:26:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6GVA # _exptl.entry_id 6GVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 419.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(2-azanylethylsulfanyl)-3-propan-2-yl-~{N}-[(4-pyridin-2-ylphenyl)methyl]-2~{H}-pyrazolo[4,3-d]pyrimidin-7-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GVA _cell.length_a 71.015 _cell.length_b 112.642 _cell.length_c 159.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 153 B CYS 327 1_555 B SG CYS 153 B CYS 327 4_555 ? B ? ? B ? ? ? ? ? ? ? 2.196 ? covale ? covale1 A C TYR 160 A TYR 159 1_555 A N TPO 161 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C TPO 161 A TPO 160 1_555 A N HIS 162 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 B SG CYS 19 B CYS 193 1_555 J S1 SGM . B SGM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C22 H25 N7 S' _chem_comp.formula_weight 419.546 _chem_comp.id FCQ _chem_comp.mon_nstd_flag . _chem_comp.name 5-(2-azanylethylsulfanyl)-3-propan-2-yl-~{N}-[(4-pyridin-2-ylphenyl)methyl]-2~{H}-pyrazolo[4,3-d]pyrimidin-7-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 N2 FCQ sing 92 n y N1 C4 FCQ sing 93 n y N2 C5 FCQ doub 94 n y C2 C4 FCQ sing 95 n n C2 C3 FCQ sing 96 n n C2 C1 FCQ sing 97 n n C4 C6 FCQ doub 98 n y C21 C22 FCQ doub 99 n y C21 C20 FCQ sing 100 n y C22 C18 FCQ sing 101 n y C16 C17 FCQ doub 102 n y C16 C15 FCQ sing 103 n y C5 C6 FCQ sing 104 n y C5 C10 FCQ sing 105 n y C17 C12 FCQ sing 106 n y C6 N3 FCQ sing 107 n y C20 C19 FCQ doub 108 n y N6 C10 FCQ sing 109 n n N6 C11 FCQ sing 110 n n C18 C15 FCQ sing 111 n n C18 N7 FCQ doub 112 n y C10 N5 FCQ doub 113 n y C15 C14 FCQ doub 114 n y N3 C7 FCQ doub 115 n y C12 C11 FCQ sing 116 n n C12 C13 FCQ doub 117 n y C19 N7 FCQ sing 118 n y N5 C7 FCQ sing 119 n y C7 S1 FCQ sing 120 n n C14 C13 FCQ sing 121 n y S1 C8 FCQ sing 122 n n C8 C9 FCQ sing 123 n n C9 N4 FCQ sing 124 n n C14 H1 FCQ sing 125 n n C11 H2 FCQ sing 126 n n C11 H3 FCQ sing 127 n n C8 H4 FCQ sing 128 n n C8 H5 FCQ sing 129 n n C9 H6 FCQ sing 130 n n C9 H7 FCQ sing 131 n n C13 H8 FCQ sing 132 n n N1 H9 FCQ sing 133 n n C3 H10 FCQ sing 134 n n C3 H11 FCQ sing 135 n n C3 H12 FCQ sing 136 n n C1 H13 FCQ sing 137 n n C1 H14 FCQ sing 138 n n C1 H15 FCQ sing 139 n n C2 H16 FCQ sing 140 n n N4 H17 FCQ sing 141 n n N4 H18 FCQ sing 142 n n N6 H20 FCQ sing 143 n n C16 H21 FCQ sing 144 n n C17 H22 FCQ sing 145 n n C19 H23 FCQ sing 146 n n C20 H24 FCQ sing 147 n n C21 H25 FCQ sing 148 n n C22 H26 FCQ sing 149 n n # _atom_sites.entry_id 6GVA _atom_sites.fract_transf_matrix[1][1] 0.014082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FCQ A 1 301 1 FCQ DRG . D 4 EDO A 1 302 2 EDO EDO . E 4 EDO A 1 303 3 EDO EDO . F 5 CL A 1 304 1 CL CL . G 6 BR A 1 305 1 BR BR . H 7 PG4 B 1 501 1 PG4 PG4 . I 4 EDO B 1 502 1 EDO EDO . J 8 SGM B 1 503 1 SGM SGM . K 9 PGE B 1 504 1 PGE PGE . L 10 HOH A 1 401 137 HOH HOH . L 10 HOH A 2 402 133 HOH HOH . L 10 HOH A 3 403 51 HOH HOH . L 10 HOH A 4 404 37 HOH HOH . L 10 HOH A 5 405 106 HOH HOH . L 10 HOH A 6 406 154 HOH HOH . L 10 HOH A 7 407 98 HOH HOH . L 10 HOH A 8 408 29 HOH HOH . L 10 HOH A 9 409 172 HOH HOH . L 10 HOH A 10 410 91 HOH HOH . L 10 HOH A 11 411 96 HOH HOH . L 10 HOH A 12 412 62 HOH HOH . L 10 HOH A 13 413 111 HOH HOH . L 10 HOH A 14 414 31 HOH HOH . L 10 HOH A 15 415 26 HOH HOH . L 10 HOH A 16 416 43 HOH HOH . L 10 HOH A 17 417 20 HOH HOH . L 10 HOH A 18 418 17 HOH HOH . L 10 HOH A 19 419 124 HOH HOH . L 10 HOH A 20 420 84 HOH HOH . L 10 HOH A 21 421 138 HOH HOH . L 10 HOH A 22 422 5 HOH HOH . L 10 HOH A 23 423 58 HOH HOH . L 10 HOH A 24 424 53 HOH HOH . L 10 HOH A 25 425 21 HOH HOH . L 10 HOH A 26 426 165 HOH HOH . L 10 HOH A 27 427 107 HOH HOH . L 10 HOH A 28 428 23 HOH HOH . L 10 HOH A 29 429 104 HOH HOH . L 10 HOH A 30 430 66 HOH HOH . L 10 HOH A 31 431 125 HOH HOH . L 10 HOH A 32 432 101 HOH HOH . L 10 HOH A 33 433 60 HOH HOH . L 10 HOH A 34 434 25 HOH HOH . L 10 HOH A 35 435 44 HOH HOH . L 10 HOH A 36 436 30 HOH HOH . L 10 HOH A 37 437 19 HOH HOH . L 10 HOH A 38 438 174 HOH HOH . L 10 HOH A 39 439 167 HOH HOH . L 10 HOH A 40 440 88 HOH HOH . L 10 HOH A 41 441 122 HOH HOH . L 10 HOH A 42 442 94 HOH HOH . L 10 HOH A 43 443 71 HOH HOH . L 10 HOH A 44 444 115 HOH HOH . L 10 HOH A 45 445 47 HOH HOH . L 10 HOH A 46 446 8 HOH HOH . L 10 HOH A 47 447 155 HOH HOH . L 10 HOH A 48 448 70 HOH HOH . L 10 HOH A 49 449 18 HOH HOH . L 10 HOH A 50 450 50 HOH HOH . L 10 HOH A 51 451 142 HOH HOH . L 10 HOH A 52 452 173 HOH HOH . L 10 HOH A 53 453 120 HOH HOH . L 10 HOH A 54 454 86 HOH HOH . L 10 HOH A 55 455 82 HOH HOH . L 10 HOH A 56 456 42 HOH HOH . L 10 HOH A 57 457 92 HOH HOH . L 10 HOH A 58 458 52 HOH HOH . L 10 HOH A 59 459 170 HOH HOH . L 10 HOH A 60 460 87 HOH HOH . L 10 HOH A 61 461 69 HOH HOH . L 10 HOH A 62 462 143 HOH HOH . L 10 HOH A 63 463 48 HOH HOH . L 10 HOH A 64 464 85 HOH HOH . L 10 HOH A 65 465 72 HOH HOH . L 10 HOH A 66 466 135 HOH HOH . L 10 HOH A 67 467 168 HOH HOH . L 10 HOH A 68 468 156 HOH HOH . L 10 HOH A 69 469 12 HOH HOH . L 10 HOH A 70 470 24 HOH HOH . L 10 HOH A 71 471 163 HOH HOH . L 10 HOH A 72 472 136 HOH HOH . L 10 HOH A 73 473 59 HOH HOH . L 10 HOH A 74 474 146 HOH HOH . L 10 HOH A 75 475 161 HOH HOH . L 10 HOH A 76 476 145 HOH HOH . M 10 HOH B 1 601 148 HOH HOH . M 10 HOH B 2 602 22 HOH HOH . M 10 HOH B 3 603 76 HOH HOH . M 10 HOH B 4 604 149 HOH HOH . M 10 HOH B 5 605 33 HOH HOH . M 10 HOH B 6 606 77 HOH HOH . M 10 HOH B 7 607 2 HOH HOH . M 10 HOH B 8 608 109 HOH HOH . M 10 HOH B 9 609 35 HOH HOH . M 10 HOH B 10 610 117 HOH HOH . M 10 HOH B 11 611 112 HOH HOH . M 10 HOH B 12 612 28 HOH HOH . M 10 HOH B 13 613 27 HOH HOH . M 10 HOH B 14 614 114 HOH HOH . M 10 HOH B 15 615 11 HOH HOH . M 10 HOH B 16 616 6 HOH HOH . M 10 HOH B 17 617 126 HOH HOH . M 10 HOH B 18 618 99 HOH HOH . M 10 HOH B 19 619 162 HOH HOH . M 10 HOH B 20 620 13 HOH HOH . M 10 HOH B 21 621 7 HOH HOH . M 10 HOH B 22 622 40 HOH HOH . M 10 HOH B 23 623 81 HOH HOH . M 10 HOH B 24 624 103 HOH HOH . M 10 HOH B 25 625 118 HOH HOH . M 10 HOH B 26 626 90 HOH HOH . M 10 HOH B 27 627 4 HOH HOH . M 10 HOH B 28 628 152 HOH HOH . M 10 HOH B 29 629 95 HOH HOH . M 10 HOH B 30 630 38 HOH HOH . M 10 HOH B 31 631 102 HOH HOH . M 10 HOH B 32 632 100 HOH HOH . M 10 HOH B 33 633 75 HOH HOH . M 10 HOH B 34 634 169 HOH HOH . M 10 HOH B 35 635 131 HOH HOH . M 10 HOH B 36 636 57 HOH HOH . M 10 HOH B 37 637 164 HOH HOH . M 10 HOH B 38 638 123 HOH HOH . M 10 HOH B 39 639 153 HOH HOH . M 10 HOH B 40 640 110 HOH HOH . M 10 HOH B 41 641 121 HOH HOH . M 10 HOH B 42 642 68 HOH HOH . M 10 HOH B 43 643 119 HOH HOH . M 10 HOH B 44 644 78 HOH HOH . M 10 HOH B 45 645 139 HOH HOH . M 10 HOH B 46 646 97 HOH HOH . M 10 HOH B 47 647 15 HOH HOH . M 10 HOH B 48 648 105 HOH HOH . M 10 HOH B 49 649 3 HOH HOH . M 10 HOH B 50 650 171 HOH HOH . M 10 HOH B 51 651 157 HOH HOH . M 10 HOH B 52 652 134 HOH HOH . M 10 HOH B 53 653 83 HOH HOH . M 10 HOH B 54 654 116 HOH HOH . M 10 HOH B 55 655 64 HOH HOH . M 10 HOH B 56 656 74 HOH HOH . M 10 HOH B 57 657 150 HOH HOH . M 10 HOH B 58 658 79 HOH HOH . M 10 HOH B 59 659 151 HOH HOH . M 10 HOH B 60 660 128 HOH HOH . M 10 HOH B 61 661 89 HOH HOH . M 10 HOH B 62 662 67 HOH HOH . M 10 HOH B 63 663 108 HOH HOH . M 10 HOH B 64 664 93 HOH HOH . M 10 HOH B 65 665 41 HOH HOH . M 10 HOH B 66 666 10 HOH HOH . M 10 HOH B 67 667 73 HOH HOH . M 10 HOH B 68 668 63 HOH HOH . M 10 HOH B 69 669 113 HOH HOH . M 10 HOH B 70 670 132 HOH HOH . M 10 HOH B 71 671 14 HOH HOH . M 10 HOH B 72 672 55 HOH HOH . M 10 HOH B 73 673 34 HOH HOH . M 10 HOH B 74 674 65 HOH HOH . M 10 HOH B 75 675 1 HOH HOH . M 10 HOH B 76 676 9 HOH HOH . M 10 HOH B 77 677 49 HOH HOH . M 10 HOH B 78 678 54 HOH HOH . M 10 HOH B 79 679 140 HOH HOH . M 10 HOH B 80 680 130 HOH HOH . M 10 HOH B 81 681 144 HOH HOH . M 10 HOH B 82 682 129 HOH HOH . M 10 HOH B 83 683 39 HOH HOH . M 10 HOH B 84 684 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 FCQ . . . C 3 19.236 24.859 -24.94 1 29.02 ? C4 FCQ 301 A 1 HETATM 2 C C14 FCQ . . . C 3 13.04 30.109 -22.119 1 39.44 ? C14 FCQ 301 A 1 HETATM 3 C C5 FCQ . . . C 3 17.192 25.521 -24.378 1 28.96 ? C5 FCQ 301 A 1 HETATM 4 C C6 FCQ . . . C 3 18.54 25.611 -24.042 1 29.45 ? C6 FCQ 301 A 1 HETATM 5 C C11 FCQ . . . C 3 13.918 26.47 -22.78 1 36.82 ? C11 FCQ 301 A 1 HETATM 6 C C7 FCQ . . . C 3 18.028 26.968 -22.29 1 31.22 ? C7 FCQ 301 A 1 HETATM 7 C C8 FCQ . . . C 3 16.957 28.323 -20.096 1 34.71 ? C8 FCQ 301 A 1 HETATM 8 C C9 FCQ . . . C 3 16.54 27.174 -19.206 1 37.79 ? C9 FCQ 301 A 1 HETATM 9 C C10 FCQ . . . C 3 16.259 26.201 -23.584 1 31.7 ? C10 FCQ 301 A 1 HETATM 10 C C12 FCQ . . . C 3 13.458 27.896 -22.961 1 36.22 ? C12 FCQ 301 A 1 HETATM 11 C C13 FCQ . . . C 3 13.498 28.817 -21.928 1 36.9 ? C13 FCQ 301 A 1 HETATM 12 N N1 FCQ . . . C 3 18.388 24.298 -25.797 1 27.99 ? N1 FCQ 301 A 1 HETATM 13 N N2 FCQ . . . C 3 17.148 24.705 -25.448 1 27.99 ? N2 FCQ 301 A 1 HETATM 14 C C3 FCQ . . . C 3 21.539 25.867 -24.797 1 29.78 ? C3 FCQ 301 A 1 HETATM 15 N N3 FCQ . . . C 3 18.98 26.348 -22.993 1 30.62 ? N3 FCQ 301 A 1 HETATM 16 C C1 FCQ . . . C 3 21.114 23.497 -24.012 1 31.04 ? C1 FCQ 301 A 1 HETATM 17 C C2 FCQ . . . C 3 20.716 24.597 -25.001 1 29.38 ? C2 FCQ 301 A 1 HETATM 18 S S1 FCQ . . . C 3 18.527 27.97 -20.942 1 31.9 ? S1 FCQ 301 A 1 HETATM 19 N N4 FCQ . . . C 3 17.235 27.159 -17.906 1 39.47 ? N4 FCQ 301 A 1 HETATM 20 N N5 FCQ . . . C 3 16.697 26.919 -22.531 1 29.91 ? N5 FCQ 301 A 1 HETATM 21 N N6 FCQ . . . C 3 14.909 26.125 -23.8 1 34.16 ? N6 FCQ 301 A 1 HETATM 22 C C15 FCQ . . . C 3 12.531 30.513 -23.352 1 41.85 ? C15 FCQ 301 A 1 HETATM 23 C C16 FCQ . . . C 3 12.515 29.584 -24.39 1 40.93 ? C16 FCQ 301 A 1 HETATM 24 C C17 FCQ . . . C 3 12.961 28.296 -24.187 1 39.74 ? C17 FCQ 301 A 1 HETATM 25 C C18 FCQ . . . C 3 12.116 31.918 -23.584 1 42.97 ? C18 FCQ 301 A 1 HETATM 26 N N7 FCQ . . . C 3 12.646 32.841 -22.745 1 48.5 ? N7 FCQ 301 A 1 HETATM 27 C C19 FCQ . . . C 3 12.328 34.131 -22.937 1 45.87 ? C19 FCQ 301 A 1 HETATM 28 C C20 FCQ . . . C 3 11.523 34.562 -23.961 1 42.91 ? C20 FCQ 301 A 1 HETATM 29 C C21 FCQ . . . C 3 11.019 33.623 -24.832 1 46.71 ? C21 FCQ 301 A 1 HETATM 30 C C22 FCQ . . . C 3 11.326 32.29 -24.654 1 42.92 ? C22 FCQ 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #