data_6GVA
#
_model_server_result.job_id            0Sc5FWLR0U9az1gOtky-gA 
_model_server_result.datetime_utc      '2024-11-12 21:26:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gva 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":503}' 
#
_entry.id    6GVA 
#
_exptl.entry_id    6GVA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              108.159 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            MONOTHIOGLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6GVA 
_cell.length_a            71.015 
_cell.length_b            112.642 
_cell.length_c            159.69 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GVA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 153 B CYS 327 1_555 B SG CYS 153 B CYS 327 4_555 ? B ? ? B ? ? ? ? ? ? ? 2.196 ? 
covale ? covale1 A C TYR 160 A TYR 159 1_555 A N TPO 161 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C TPO 161 A TPO 160 1_555 A N HIS 162 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 B SG CYS 19 B CYS 193 1_555 J S1 SGM . B SGM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
#
_chem_comp.formula           'C3 H8 O2 S' 
_chem_comp.formula_weight    108.159 
_chem_comp.id                SGM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              MONOTHIOGLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SGM sing 410 n n 
C1 S1 SGM sing 411 n n 
C1 H11 SGM sing 412 n n 
C1 H12 SGM sing 413 n n 
C2 O2 SGM sing 414 n n 
C2 C3 SGM sing 415 n n 
C2 H2 SGM sing 416 n n 
O2 HO2 SGM sing 417 n n 
C3 O3 SGM sing 418 n n 
C3 H31 SGM sing 419 n n 
C3 H32 SGM sing 420 n n 
O3 HO3 SGM sing 421 n n 
S1 HS1 SGM sing 422 n n 
#
_atom_sites.entry_id                     6GVA 
_atom_sites.fract_transf_matrix[1][1]    0.014082 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008878 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006262 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 FCQ A 1 301 1 FCQ DRG . 
D 4 EDO A 1 302 2 EDO EDO . 
E 4 EDO A 1 303 3 EDO EDO . 
F 5 CL A 1 304 1 CL CL . 
G 6 BR A 1 305 1 BR BR . 
H 7 PG4 B 1 501 1 PG4 PG4 . 
I 4 EDO B 1 502 1 EDO EDO . 
J 8 SGM B 1 503 1 SGM SGM . 
K 9 PGE B 1 504 1 PGE PGE . 
L 10 HOH A 1 401 137 HOH HOH . 
L 10 HOH A 2 402 133 HOH HOH . 
L 10 HOH A 3 403 51 HOH HOH . 
L 10 HOH A 4 404 37 HOH HOH . 
L 10 HOH A 5 405 106 HOH HOH . 
L 10 HOH A 6 406 154 HOH HOH . 
L 10 HOH A 7 407 98 HOH HOH . 
L 10 HOH A 8 408 29 HOH HOH . 
L 10 HOH A 9 409 172 HOH HOH . 
L 10 HOH A 10 410 91 HOH HOH . 
L 10 HOH A 11 411 96 HOH HOH . 
L 10 HOH A 12 412 62 HOH HOH . 
L 10 HOH A 13 413 111 HOH HOH . 
L 10 HOH A 14 414 31 HOH HOH . 
L 10 HOH A 15 415 26 HOH HOH . 
L 10 HOH A 16 416 43 HOH HOH . 
L 10 HOH A 17 417 20 HOH HOH . 
L 10 HOH A 18 418 17 HOH HOH . 
L 10 HOH A 19 419 124 HOH HOH . 
L 10 HOH A 20 420 84 HOH HOH . 
L 10 HOH A 21 421 138 HOH HOH . 
L 10 HOH A 22 422 5 HOH HOH . 
L 10 HOH A 23 423 58 HOH HOH . 
L 10 HOH A 24 424 53 HOH HOH . 
L 10 HOH A 25 425 21 HOH HOH . 
L 10 HOH A 26 426 165 HOH HOH . 
L 10 HOH A 27 427 107 HOH HOH . 
L 10 HOH A 28 428 23 HOH HOH . 
L 10 HOH A 29 429 104 HOH HOH . 
L 10 HOH A 30 430 66 HOH HOH . 
L 10 HOH A 31 431 125 HOH HOH . 
L 10 HOH A 32 432 101 HOH HOH . 
L 10 HOH A 33 433 60 HOH HOH . 
L 10 HOH A 34 434 25 HOH HOH . 
L 10 HOH A 35 435 44 HOH HOH . 
L 10 HOH A 36 436 30 HOH HOH . 
L 10 HOH A 37 437 19 HOH HOH . 
L 10 HOH A 38 438 174 HOH HOH . 
L 10 HOH A 39 439 167 HOH HOH . 
L 10 HOH A 40 440 88 HOH HOH . 
L 10 HOH A 41 441 122 HOH HOH . 
L 10 HOH A 42 442 94 HOH HOH . 
L 10 HOH A 43 443 71 HOH HOH . 
L 10 HOH A 44 444 115 HOH HOH . 
L 10 HOH A 45 445 47 HOH HOH . 
L 10 HOH A 46 446 8 HOH HOH . 
L 10 HOH A 47 447 155 HOH HOH . 
L 10 HOH A 48 448 70 HOH HOH . 
L 10 HOH A 49 449 18 HOH HOH . 
L 10 HOH A 50 450 50 HOH HOH . 
L 10 HOH A 51 451 142 HOH HOH . 
L 10 HOH A 52 452 173 HOH HOH . 
L 10 HOH A 53 453 120 HOH HOH . 
L 10 HOH A 54 454 86 HOH HOH . 
L 10 HOH A 55 455 82 HOH HOH . 
L 10 HOH A 56 456 42 HOH HOH . 
L 10 HOH A 57 457 92 HOH HOH . 
L 10 HOH A 58 458 52 HOH HOH . 
L 10 HOH A 59 459 170 HOH HOH . 
L 10 HOH A 60 460 87 HOH HOH . 
L 10 HOH A 61 461 69 HOH HOH . 
L 10 HOH A 62 462 143 HOH HOH . 
L 10 HOH A 63 463 48 HOH HOH . 
L 10 HOH A 64 464 85 HOH HOH . 
L 10 HOH A 65 465 72 HOH HOH . 
L 10 HOH A 66 466 135 HOH HOH . 
L 10 HOH A 67 467 168 HOH HOH . 
L 10 HOH A 68 468 156 HOH HOH . 
L 10 HOH A 69 469 12 HOH HOH . 
L 10 HOH A 70 470 24 HOH HOH . 
L 10 HOH A 71 471 163 HOH HOH . 
L 10 HOH A 72 472 136 HOH HOH . 
L 10 HOH A 73 473 59 HOH HOH . 
L 10 HOH A 74 474 146 HOH HOH . 
L 10 HOH A 75 475 161 HOH HOH . 
L 10 HOH A 76 476 145 HOH HOH . 
M 10 HOH B 1 601 148 HOH HOH . 
M 10 HOH B 2 602 22 HOH HOH . 
M 10 HOH B 3 603 76 HOH HOH . 
M 10 HOH B 4 604 149 HOH HOH . 
M 10 HOH B 5 605 33 HOH HOH . 
M 10 HOH B 6 606 77 HOH HOH . 
M 10 HOH B 7 607 2 HOH HOH . 
M 10 HOH B 8 608 109 HOH HOH . 
M 10 HOH B 9 609 35 HOH HOH . 
M 10 HOH B 10 610 117 HOH HOH . 
M 10 HOH B 11 611 112 HOH HOH . 
M 10 HOH B 12 612 28 HOH HOH . 
M 10 HOH B 13 613 27 HOH HOH . 
M 10 HOH B 14 614 114 HOH HOH . 
M 10 HOH B 15 615 11 HOH HOH . 
M 10 HOH B 16 616 6 HOH HOH . 
M 10 HOH B 17 617 126 HOH HOH . 
M 10 HOH B 18 618 99 HOH HOH . 
M 10 HOH B 19 619 162 HOH HOH . 
M 10 HOH B 20 620 13 HOH HOH . 
M 10 HOH B 21 621 7 HOH HOH . 
M 10 HOH B 22 622 40 HOH HOH . 
M 10 HOH B 23 623 81 HOH HOH . 
M 10 HOH B 24 624 103 HOH HOH . 
M 10 HOH B 25 625 118 HOH HOH . 
M 10 HOH B 26 626 90 HOH HOH . 
M 10 HOH B 27 627 4 HOH HOH . 
M 10 HOH B 28 628 152 HOH HOH . 
M 10 HOH B 29 629 95 HOH HOH . 
M 10 HOH B 30 630 38 HOH HOH . 
M 10 HOH B 31 631 102 HOH HOH . 
M 10 HOH B 32 632 100 HOH HOH . 
M 10 HOH B 33 633 75 HOH HOH . 
M 10 HOH B 34 634 169 HOH HOH . 
M 10 HOH B 35 635 131 HOH HOH . 
M 10 HOH B 36 636 57 HOH HOH . 
M 10 HOH B 37 637 164 HOH HOH . 
M 10 HOH B 38 638 123 HOH HOH . 
M 10 HOH B 39 639 153 HOH HOH . 
M 10 HOH B 40 640 110 HOH HOH . 
M 10 HOH B 41 641 121 HOH HOH . 
M 10 HOH B 42 642 68 HOH HOH . 
M 10 HOH B 43 643 119 HOH HOH . 
M 10 HOH B 44 644 78 HOH HOH . 
M 10 HOH B 45 645 139 HOH HOH . 
M 10 HOH B 46 646 97 HOH HOH . 
M 10 HOH B 47 647 15 HOH HOH . 
M 10 HOH B 48 648 105 HOH HOH . 
M 10 HOH B 49 649 3 HOH HOH . 
M 10 HOH B 50 650 171 HOH HOH . 
M 10 HOH B 51 651 157 HOH HOH . 
M 10 HOH B 52 652 134 HOH HOH . 
M 10 HOH B 53 653 83 HOH HOH . 
M 10 HOH B 54 654 116 HOH HOH . 
M 10 HOH B 55 655 64 HOH HOH . 
M 10 HOH B 56 656 74 HOH HOH . 
M 10 HOH B 57 657 150 HOH HOH . 
M 10 HOH B 58 658 79 HOH HOH . 
M 10 HOH B 59 659 151 HOH HOH . 
M 10 HOH B 60 660 128 HOH HOH . 
M 10 HOH B 61 661 89 HOH HOH . 
M 10 HOH B 62 662 67 HOH HOH . 
M 10 HOH B 63 663 108 HOH HOH . 
M 10 HOH B 64 664 93 HOH HOH . 
M 10 HOH B 65 665 41 HOH HOH . 
M 10 HOH B 66 666 10 HOH HOH . 
M 10 HOH B 67 667 73 HOH HOH . 
M 10 HOH B 68 668 63 HOH HOH . 
M 10 HOH B 69 669 113 HOH HOH . 
M 10 HOH B 70 670 132 HOH HOH . 
M 10 HOH B 71 671 14 HOH HOH . 
M 10 HOH B 72 672 55 HOH HOH . 
M 10 HOH B 73 673 34 HOH HOH . 
M 10 HOH B 74 674 65 HOH HOH . 
M 10 HOH B 75 675 1 HOH HOH . 
M 10 HOH B 76 676 9 HOH HOH . 
M 10 HOH B 77 677 49 HOH HOH . 
M 10 HOH B 78 678 54 HOH HOH . 
M 10 HOH B 79 679 140 HOH HOH . 
M 10 HOH B 80 680 130 HOH HOH . 
M 10 HOH B 81 681 144 HOH HOH . 
M 10 HOH B 82 682 129 HOH HOH . 
M 10 HOH B 83 683 39 HOH HOH . 
M 10 HOH B 84 684 141 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SGM . . . J 8 38.564 10.762 -30.489 1 73.67 ? C1 SGM 503 B 1 
HETATM 2 C C2 SGM . . . J 8 37.041 10.946 -30.535 1 73.28 ? C2 SGM 503 B 1 
HETATM 3 O O2 SGM . . . J 8 36.443 10.729 -29.249 1 78.1 ? O2 SGM 503 B 1 
HETATM 4 C C3 SGM . . . J 8 36.393 10.004 -31.539 1 71.68 ? C3 SGM 503 B 1 
HETATM 5 O O3 SGM . . . J 8 37.128 10.038 -32.768 1 72.15 ? O3 SGM 503 B 1 
HETATM 6 S S1 SGM . . . J 8 39.327 11.153 -28.883 1 75.55 ? S1 SGM 503 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           6 
#