data_6GVK # _model_server_result.job_id e_MZqxON2X3fhJpPihoTXQ _model_server_result.datetime_utc '2024-10-10 02:27:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gvk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1701}' # _entry.id 6GVK # _exptl.entry_id 6GVK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.5 _cell.angle_gamma 90 _cell.entry_id 6GVK _cell.length_a 105.58 _cell.length_b 59.52 _cell.length_c 42.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 107 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 1559 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 11 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 36 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.041 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6GVK _atom_sites.fract_transf_matrix[1][1] 0.009471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004117 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 1701 1 GOL GOL . D 3 GOL A 1 1702 2 GOL GOL . E 4 HOH A 1 1801 37 HOH HOH . E 4 HOH A 2 1802 63 HOH HOH . E 4 HOH A 3 1803 79 HOH HOH . E 4 HOH A 4 1804 22 HOH HOH . E 4 HOH A 5 1805 39 HOH HOH . E 4 HOH A 6 1806 73 HOH HOH . E 4 HOH A 7 1807 8 HOH HOH . E 4 HOH A 8 1808 32 HOH HOH . E 4 HOH A 9 1809 51 HOH HOH . E 4 HOH A 10 1810 42 HOH HOH . E 4 HOH A 11 1811 70 HOH HOH . E 4 HOH A 12 1812 54 HOH HOH . E 4 HOH A 13 1813 13 HOH HOH . E 4 HOH A 14 1814 25 HOH HOH . E 4 HOH A 15 1815 81 HOH HOH . E 4 HOH A 16 1816 5 HOH HOH . E 4 HOH A 17 1817 68 HOH HOH . E 4 HOH A 18 1818 9 HOH HOH . E 4 HOH A 19 1819 88 HOH HOH . E 4 HOH A 20 1820 2 HOH HOH . E 4 HOH A 21 1821 101 HOH HOH . E 4 HOH A 22 1822 18 HOH HOH . E 4 HOH A 23 1823 36 HOH HOH . E 4 HOH A 24 1824 67 HOH HOH . E 4 HOH A 25 1825 44 HOH HOH . E 4 HOH A 26 1826 62 HOH HOH . E 4 HOH A 27 1827 98 HOH HOH . E 4 HOH A 28 1828 49 HOH HOH . E 4 HOH A 29 1829 53 HOH HOH . E 4 HOH A 30 1830 6 HOH HOH . E 4 HOH A 31 1831 47 HOH HOH . E 4 HOH A 32 1832 33 HOH HOH . E 4 HOH A 33 1833 78 HOH HOH . E 4 HOH A 34 1834 43 HOH HOH . E 4 HOH A 35 1835 34 HOH HOH . E 4 HOH A 36 1836 72 HOH HOH . E 4 HOH A 37 1837 19 HOH HOH . E 4 HOH A 38 1838 11 HOH HOH . E 4 HOH A 39 1839 80 HOH HOH . E 4 HOH A 40 1840 20 HOH HOH . E 4 HOH A 41 1841 92 HOH HOH . E 4 HOH A 42 1842 29 HOH HOH . E 4 HOH A 43 1843 3 HOH HOH . E 4 HOH A 44 1844 30 HOH HOH . E 4 HOH A 45 1845 77 HOH HOH . E 4 HOH A 46 1846 21 HOH HOH . E 4 HOH A 47 1847 26 HOH HOH . E 4 HOH A 48 1848 7 HOH HOH . E 4 HOH A 49 1849 40 HOH HOH . E 4 HOH A 50 1850 4 HOH HOH . E 4 HOH A 51 1851 16 HOH HOH . E 4 HOH A 52 1852 57 HOH HOH . E 4 HOH A 53 1853 10 HOH HOH . E 4 HOH A 54 1854 74 HOH HOH . E 4 HOH A 55 1855 82 HOH HOH . E 4 HOH A 56 1856 24 HOH HOH . E 4 HOH A 57 1857 86 HOH HOH . E 4 HOH A 58 1858 50 HOH HOH . E 4 HOH A 59 1859 61 HOH HOH . E 4 HOH A 60 1860 104 HOH HOH . E 4 HOH A 61 1861 91 HOH HOH . E 4 HOH A 62 1862 59 HOH HOH . E 4 HOH A 63 1863 71 HOH HOH . E 4 HOH A 64 1864 15 HOH HOH . E 4 HOH A 65 1865 28 HOH HOH . E 4 HOH A 66 1866 27 HOH HOH . E 4 HOH A 67 1867 41 HOH HOH . E 4 HOH A 68 1868 55 HOH HOH . E 4 HOH A 69 1869 35 HOH HOH . E 4 HOH A 70 1870 60 HOH HOH . E 4 HOH A 71 1871 31 HOH HOH . E 4 HOH A 72 1872 45 HOH HOH . E 4 HOH A 73 1873 69 HOH HOH . E 4 HOH A 74 1874 94 HOH HOH . E 4 HOH A 75 1875 14 HOH HOH . E 4 HOH A 76 1876 105 HOH HOH . E 4 HOH A 77 1877 64 HOH HOH . E 4 HOH A 78 1878 12 HOH HOH . E 4 HOH A 79 1879 1 HOH HOH . E 4 HOH A 80 1880 84 HOH HOH . E 4 HOH A 81 1881 38 HOH HOH . E 4 HOH A 82 1882 103 HOH HOH . E 4 HOH A 83 1883 66 HOH HOH . E 4 HOH A 84 1884 58 HOH HOH . E 4 HOH A 85 1885 102 HOH HOH . E 4 HOH A 86 1886 99 HOH HOH . E 4 HOH A 87 1887 56 HOH HOH . E 4 HOH A 88 1888 97 HOH HOH . E 4 HOH A 89 1889 87 HOH HOH . E 4 HOH A 90 1890 65 HOH HOH . E 4 HOH A 91 1891 95 HOH HOH . E 4 HOH A 92 1892 48 HOH HOH . E 4 HOH A 93 1893 52 HOH HOH . E 4 HOH A 94 1894 83 HOH HOH . E 4 HOH A 95 1895 75 HOH HOH . E 4 HOH A 96 1896 100 HOH HOH . E 4 HOH A 97 1897 89 HOH HOH . E 4 HOH A 98 1898 76 HOH HOH . E 4 HOH A 99 1899 90 HOH HOH . F 4 HOH B 1 101 96 HOH HOH . F 4 HOH B 2 102 17 HOH HOH . F 4 HOH B 3 103 85 HOH HOH . F 4 HOH B 4 104 23 HOH HOH . F 4 HOH B 5 105 46 HOH HOH . F 4 HOH B 6 106 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . C 3 -2.799 30.642 20.143 0.65 42.28 ? C1 GOL 1701 A 1 HETATM 2 C C1 GOL . B . C 3 -5.07 31.937 20.53 0.35 42.15 ? C1 GOL 1701 A 1 HETATM 3 O O1 GOL . A . C 3 -2.655 31.236 18.845 0.65 42.61 ? O1 GOL 1701 A 1 HETATM 4 O O1 GOL . B . C 3 -5.563 33.2 20.993 0.35 41.13 ? O1 GOL 1701 A 1 HETATM 5 C C2 GOL . A . C 3 -3.766 31.464 20.991 0.65 41.83 ? C2 GOL 1701 A 1 HETATM 6 C C2 GOL . B . C 3 -3.672 31.696 21.085 0.35 42.04 ? C2 GOL 1701 A 1 HETATM 7 O O2 GOL . A . C 3 -5.057 31.485 20.373 0.65 41.77 ? O2 GOL 1701 A 1 HETATM 8 O O2 GOL . B . C 3 -3.75 31.154 22.41 0.35 42.75 ? O2 GOL 1701 A 1 HETATM 9 C C3 GOL . A . C 3 -3.863 30.876 22.397 0.65 42.53 ? C3 GOL 1701 A 1 HETATM 10 C C3 GOL . B . C 3 -2.904 30.724 20.195 0.35 42.48 ? C3 GOL 1701 A 1 HETATM 11 O O3 GOL . A . C 3 -3.837 29.445 22.347 0.65 41.31 ? O3 GOL 1701 A 1 HETATM 12 O O3 GOL . B . C 3 -2.665 31.319 18.913 0.35 43.09 ? O3 GOL 1701 A 1 HETATM 13 H H11 GOL . A . C 3 -1.826 30.594 20.636 0.65 50.73 ? H11 GOL 1701 A 1 HETATM 14 H H11 GOL . B . C 3 -5.042 31.928 19.439 0.35 50.58 ? H11 GOL 1701 A 1 HETATM 15 H H12 GOL . A . C 3 -3.174 29.622 20.041 0.65 50.73 ? H12 GOL 1701 A 1 HETATM 16 H H12 GOL . B . C 3 -5.74 31.137 20.854 0.35 50.58 ? H12 GOL 1701 A 1 HETATM 17 H HO1 GOL . A . C 3 -1.972 30.764 18.35 0.65 51.14 ? HO1 GOL 1701 A 1 HETATM 18 H HO1 GOL . B . C 3 -6.43 33.372 20.6 0.35 49.35 ? HO1 GOL 1701 A 1 HETATM 19 H H2 GOL . A . C 3 -3.377 32.489 21.074 0.65 50.2 ? H2 GOL 1701 A 1 HETATM 20 H H2 GOL . B . C 3 -3.146 32.661 21.097 0.35 50.45 ? H2 GOL 1701 A 1 HETATM 21 H HO2 GOL . A . C 3 -5.392 30.581 20.296 0.65 50.13 ? HO2 GOL 1701 A 1 HETATM 22 H HO2 GOL . B . C 3 -3.948 30.209 22.361 0.35 51.3 ? HO2 GOL 1701 A 1 HETATM 23 H H31 GOL . A . C 3 -4.789 31.209 22.87 0.65 51.04 ? H31 GOL 1701 A 1 HETATM 24 H H31 GOL . B . C 3 -3.479 29.804 20.072 0.35 50.98 ? H31 GOL 1701 A 1 HETATM 25 H H32 GOL . A . C 3 -3.029 31.236 23.003 0.65 51.04 ? H32 GOL 1701 A 1 HETATM 26 H H32 GOL . B . C 3 -1.953 30.466 20.665 0.35 50.98 ? H32 GOL 1701 A 1 HETATM 27 H HO3 GOL . A . C 3 -3.775 29.092 23.245 0.65 49.58 ? HO3 GOL 1701 A 1 HETATM 28 H HO3 GOL . B . C 3 -2.082 30.747 18.396 0.35 51.71 ? HO3 GOL 1701 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #