data_6GVN # _model_server_result.job_id Jjg5oVwi33sCXHwnw3sHtw _model_server_result.datetime_utc '2024-11-05 06:38:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":503}' # _entry.id 6GVN # _exptl.entry_id 6GVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99 _cell.angle_gamma 90 _cell.entry_id 6GVN _cell.length_a 73.1 _cell.length_b 84.26 _cell.length_c 81.98 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,L 1 1 B,C,G,H,I,J,K,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O2G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc2 D O1B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc3 E MG MG . A MG 502 1_555 L O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc4 E MG MG . A MG 502 1_555 L O HOH . A HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc5 G O2G GTP . B GTP 501 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc6 G O1B GTP . B GTP 501 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 281 n n O1 C6 MES sing 282 n n C2 C3 MES sing 283 n n C2 H21 MES sing 284 n n C2 H22 MES sing 285 n n C3 N4 MES sing 286 n n C3 H31 MES sing 287 n n C3 H32 MES sing 288 n n N4 C5 MES sing 289 n n N4 C7 MES sing 290 n n N4 HN4 MES sing 291 n n C5 C6 MES sing 292 n n C5 H51 MES sing 293 n n C5 H52 MES sing 294 n n C6 H61 MES sing 295 n n C6 H62 MES sing 296 n n C7 C8 MES sing 297 n n C7 H71 MES sing 298 n n C7 H72 MES sing 299 n n C8 S MES sing 300 n n C8 H81 MES sing 301 n n C8 H82 MES sing 302 n n S O1S MES doub 303 n n S O2S MES doub 304 n n S O3S MES sing 305 n n # _atom_sites.entry_id 6GVN _atom_sites.fract_transf_matrix[1][1] 0.01368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002167 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 6 SO4 A 1 503 1 SO4 SO4 . G 4 GTP B 1 501 501 GTP GTP . H 5 MG B 1 502 502 MG MG . I 7 MES B 1 503 1 MES MES . J 8 GOL B 1 504 1 GOL GOL . K 8 GOL F 1 201 2 GOL GOL . L 9 HOH A 1 601 98 HOH HOH . L 9 HOH A 2 602 511 HOH HOH . L 9 HOH A 3 603 512 HOH HOH . L 9 HOH A 4 604 94 HOH HOH . L 9 HOH A 5 605 109 HOH HOH . L 9 HOH A 6 606 105 HOH HOH . L 9 HOH A 7 607 101 HOH HOH . L 9 HOH A 8 608 43 HOH HOH . L 9 HOH A 9 609 4 HOH HOH . L 9 HOH A 10 610 93 HOH HOH . L 9 HOH A 11 611 97 HOH HOH . L 9 HOH A 12 612 2 HOH HOH . L 9 HOH A 13 613 21 HOH HOH . L 9 HOH A 14 614 27 HOH HOH . L 9 HOH A 15 615 48 HOH HOH . L 9 HOH A 16 616 45 HOH HOH . L 9 HOH A 17 617 29 HOH HOH . L 9 HOH A 18 618 7 HOH HOH . L 9 HOH A 19 619 77 HOH HOH . L 9 HOH A 20 620 100 HOH HOH . L 9 HOH A 21 621 89 HOH HOH . L 9 HOH A 22 622 72 HOH HOH . L 9 HOH A 23 623 70 HOH HOH . L 9 HOH A 24 624 14 HOH HOH . L 9 HOH A 25 625 53 HOH HOH . L 9 HOH A 26 626 92 HOH HOH . L 9 HOH A 27 627 513 HOH HOH . L 9 HOH A 28 628 69 HOH HOH . L 9 HOH A 29 629 87 HOH HOH . L 9 HOH A 30 630 108 HOH HOH . L 9 HOH A 31 631 102 HOH HOH . L 9 HOH A 32 632 51 HOH HOH . L 9 HOH A 33 633 110 HOH HOH . L 9 HOH A 34 634 5 HOH HOH . L 9 HOH A 35 635 104 HOH HOH . L 9 HOH A 36 636 62 HOH HOH . L 9 HOH A 37 637 31 HOH HOH . L 9 HOH A 38 638 83 HOH HOH . L 9 HOH A 39 639 34 HOH HOH . L 9 HOH A 40 640 57 HOH HOH . L 9 HOH A 41 641 41 HOH HOH . L 9 HOH A 42 642 1 HOH HOH . L 9 HOH A 43 643 71 HOH HOH . L 9 HOH A 44 644 42 HOH HOH . L 9 HOH A 45 645 54 HOH HOH . L 9 HOH A 46 646 37 HOH HOH . L 9 HOH A 47 647 75 HOH HOH . L 9 HOH A 48 648 80 HOH HOH . L 9 HOH A 49 649 47 HOH HOH . L 9 HOH A 50 650 24 HOH HOH . L 9 HOH A 51 651 81 HOH HOH . M 9 HOH B 1 601 11 HOH HOH . M 9 HOH B 2 602 111 HOH HOH . M 9 HOH B 3 603 73 HOH HOH . M 9 HOH B 4 604 112 HOH HOH . M 9 HOH B 5 605 103 HOH HOH . M 9 HOH B 6 606 10 HOH HOH . M 9 HOH B 7 607 95 HOH HOH . M 9 HOH B 8 608 86 HOH HOH . M 9 HOH B 9 609 22 HOH HOH . M 9 HOH B 10 610 35 HOH HOH . M 9 HOH B 11 611 26 HOH HOH . M 9 HOH B 12 612 38 HOH HOH . M 9 HOH B 13 613 32 HOH HOH . M 9 HOH B 14 614 3 HOH HOH . M 9 HOH B 15 615 74 HOH HOH . M 9 HOH B 16 616 49 HOH HOH . M 9 HOH B 17 617 33 HOH HOH . M 9 HOH B 18 618 88 HOH HOH . M 9 HOH B 19 619 15 HOH HOH . M 9 HOH B 20 620 85 HOH HOH . M 9 HOH B 21 621 13 HOH HOH . M 9 HOH B 22 622 96 HOH HOH . M 9 HOH B 23 623 107 HOH HOH . M 9 HOH B 24 624 6 HOH HOH . M 9 HOH B 25 625 20 HOH HOH . M 9 HOH B 26 626 78 HOH HOH . M 9 HOH B 27 627 55 HOH HOH . M 9 HOH B 28 628 76 HOH HOH . M 9 HOH B 29 629 17 HOH HOH . M 9 HOH B 30 630 12 HOH HOH . M 9 HOH B 31 631 44 HOH HOH . M 9 HOH B 32 632 16 HOH HOH . M 9 HOH B 33 633 59 HOH HOH . M 9 HOH B 34 634 79 HOH HOH . M 9 HOH B 35 635 39 HOH HOH . M 9 HOH B 36 636 90 HOH HOH . M 9 HOH B 37 637 36 HOH HOH . M 9 HOH B 38 638 106 HOH HOH . M 9 HOH B 39 639 52 HOH HOH . M 9 HOH B 40 640 63 HOH HOH . M 9 HOH B 41 641 18 HOH HOH . M 9 HOH B 42 642 66 HOH HOH . M 9 HOH B 43 643 25 HOH HOH . M 9 HOH B 44 644 50 HOH HOH . M 9 HOH B 45 645 58 HOH HOH . M 9 HOH B 46 646 23 HOH HOH . N 9 HOH F 1 301 30 HOH HOH . N 9 HOH F 2 302 99 HOH HOH . N 9 HOH F 3 303 84 HOH HOH . N 9 HOH F 4 304 91 HOH HOH . N 9 HOH F 5 305 65 HOH HOH . N 9 HOH F 6 306 9 HOH HOH . N 9 HOH F 7 307 67 HOH HOH . N 9 HOH F 8 308 82 HOH HOH . N 9 HOH F 9 309 46 HOH HOH . N 9 HOH F 10 310 68 HOH HOH . N 9 HOH F 11 311 60 HOH HOH . N 9 HOH F 12 312 8 HOH HOH . N 9 HOH F 13 313 64 HOH HOH . N 9 HOH F 14 314 28 HOH HOH . N 9 HOH F 15 315 61 HOH HOH . N 9 HOH F 16 316 19 HOH HOH . N 9 HOH F 17 317 56 HOH HOH . N 9 HOH F 18 318 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . I 7 17.792 6.85 -0.11 1 53.32 ? O1 MES 503 B 1 HETATM 2 C C2 MES . . . I 7 17.867 7.864 0.902 1 52.28 ? C2 MES 503 B 1 HETATM 3 C C3 MES . . . I 7 16.893 7.603 2.026 1 52.04 ? C3 MES 503 B 1 HETATM 4 N N4 MES . . . I 7 15.5 7.482 1.491 1 54.73 ? N4 MES 503 B 1 HETATM 5 C C5 MES . . . I 7 15.452 6.465 0.394 1 54.68 ? C5 MES 503 B 1 HETATM 6 C C6 MES . . . I 7 16.816 5.856 0.199 1 53.76 ? C6 MES 503 B 1 HETATM 7 C C7 MES . . . I 7 14.521 7.143 2.58 1 56.4 ? C7 MES 503 B 1 HETATM 8 C C8 MES . . . I 7 13.612 8.294 2.894 1 59.13 ? C8 MES 503 B 1 HETATM 9 S S MES . . . I 7 12.437 7.807 4.136 1 64.16 ? S MES 503 B 1 HETATM 10 O O1S MES . . . I 7 11.665 6.715 3.567 1 62.5 ? O1S MES 503 B 1 HETATM 11 O O2S MES . . . I 7 11.626 8.984 4.4 1 68.52 ? O2S MES 503 B 1 HETATM 12 O O3S MES . . . I 7 13.215 7.393 5.293 1 65.21 ? O3S MES 503 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 12 #