data_6GVX
#
_model_server_result.job_id            bHPKEtxr3qZrjesRAGL5GA 
_model_server_result.datetime_utc      '2024-11-28 06:35:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gvx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    6GVX 
#
_exptl.entry_id    6GVX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.58 
_cell.angle_gamma         90 
_cell.entry_id            6GVX 
_cell.length_a            65.475 
_cell.length_b            80.074 
_cell.length_c            77.975 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GVX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6GVX 
_atom_sites.fract_transf_matrix[1][1]    0.015273 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005736 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012488 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013699 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 401 1 EDO EDO . 
D 3 TAK A 1 402 1 TAK TAK . 
E 2 EDO B 1 401 2 EDO EDO . 
F 3 TAK B 1 402 2 TAK TAK . 
G 4 HOH A 1 501 13 HOH HOH . 
G 4 HOH A 2 502 130 HOH HOH . 
G 4 HOH A 3 503 62 HOH HOH . 
G 4 HOH A 4 504 133 HOH HOH . 
G 4 HOH A 5 505 33 HOH HOH . 
G 4 HOH A 6 506 126 HOH HOH . 
G 4 HOH A 7 507 114 HOH HOH . 
G 4 HOH A 8 508 90 HOH HOH . 
G 4 HOH A 9 509 44 HOH HOH . 
G 4 HOH A 10 510 41 HOH HOH . 
G 4 HOH A 11 511 2 HOH HOH . 
G 4 HOH A 12 512 156 HOH HOH . 
G 4 HOH A 13 513 65 HOH HOH . 
G 4 HOH A 14 514 66 HOH HOH . 
G 4 HOH A 15 515 8 HOH HOH . 
G 4 HOH A 16 516 49 HOH HOH . 
G 4 HOH A 17 517 113 HOH HOH . 
G 4 HOH A 18 518 12 HOH HOH . 
G 4 HOH A 19 519 72 HOH HOH . 
G 4 HOH A 20 520 64 HOH HOH . 
G 4 HOH A 21 521 95 HOH HOH . 
G 4 HOH A 22 522 78 HOH HOH . 
G 4 HOH A 23 523 27 HOH HOH . 
G 4 HOH A 24 524 46 HOH HOH . 
G 4 HOH A 25 525 89 HOH HOH . 
G 4 HOH A 26 526 100 HOH HOH . 
G 4 HOH A 27 527 48 HOH HOH . 
G 4 HOH A 28 528 4 HOH HOH . 
G 4 HOH A 29 529 125 HOH HOH . 
G 4 HOH A 30 530 87 HOH HOH . 
G 4 HOH A 31 531 43 HOH HOH . 
G 4 HOH A 32 532 60 HOH HOH . 
G 4 HOH A 33 533 73 HOH HOH . 
G 4 HOH A 34 534 106 HOH HOH . 
G 4 HOH A 35 535 74 HOH HOH . 
G 4 HOH A 36 536 134 HOH HOH . 
G 4 HOH A 37 537 16 HOH HOH . 
G 4 HOH A 38 538 147 HOH HOH . 
G 4 HOH A 39 539 91 HOH HOH . 
G 4 HOH A 40 540 17 HOH HOH . 
G 4 HOH A 41 541 144 HOH HOH . 
G 4 HOH A 42 542 30 HOH HOH . 
G 4 HOH A 43 543 3 HOH HOH . 
G 4 HOH A 44 544 94 HOH HOH . 
G 4 HOH A 45 545 29 HOH HOH . 
G 4 HOH A 46 546 132 HOH HOH . 
G 4 HOH A 47 547 101 HOH HOH . 
G 4 HOH A 48 548 75 HOH HOH . 
G 4 HOH A 49 549 14 HOH HOH . 
G 4 HOH A 50 550 111 HOH HOH . 
G 4 HOH A 51 551 63 HOH HOH . 
G 4 HOH A 52 552 96 HOH HOH . 
G 4 HOH A 53 553 150 HOH HOH . 
G 4 HOH A 54 554 76 HOH HOH . 
G 4 HOH A 55 555 167 HOH HOH . 
G 4 HOH A 56 556 110 HOH HOH . 
G 4 HOH A 57 557 102 HOH HOH . 
G 4 HOH A 58 558 107 HOH HOH . 
G 4 HOH A 59 559 154 HOH HOH . 
G 4 HOH A 60 560 149 HOH HOH . 
G 4 HOH A 61 561 137 HOH HOH . 
G 4 HOH A 62 562 155 HOH HOH . 
G 4 HOH A 63 563 31 HOH HOH . 
G 4 HOH A 64 564 108 HOH HOH . 
G 4 HOH A 65 565 9 HOH HOH . 
G 4 HOH A 66 566 93 HOH HOH . 
G 4 HOH A 67 567 143 HOH HOH . 
G 4 HOH A 68 568 92 HOH HOH . 
G 4 HOH A 69 569 159 HOH HOH . 
G 4 HOH A 70 570 79 HOH HOH . 
G 4 HOH A 71 571 145 HOH HOH . 
H 4 HOH B 1 501 28 HOH HOH . 
H 4 HOH B 2 502 22 HOH HOH . 
H 4 HOH B 3 503 54 HOH HOH . 
H 4 HOH B 4 504 69 HOH HOH . 
H 4 HOH B 5 505 82 HOH HOH . 
H 4 HOH B 6 506 55 HOH HOH . 
H 4 HOH B 7 507 83 HOH HOH . 
H 4 HOH B 8 508 19 HOH HOH . 
H 4 HOH B 9 509 84 HOH HOH . 
H 4 HOH B 10 510 26 HOH HOH . 
H 4 HOH B 11 511 7 HOH HOH . 
H 4 HOH B 12 512 118 HOH HOH . 
H 4 HOH B 13 513 68 HOH HOH . 
H 4 HOH B 14 514 11 HOH HOH . 
H 4 HOH B 15 515 140 HOH HOH . 
H 4 HOH B 16 516 38 HOH HOH . 
H 4 HOH B 17 517 51 HOH HOH . 
H 4 HOH B 18 518 116 HOH HOH . 
H 4 HOH B 19 519 52 HOH HOH . 
H 4 HOH B 20 520 117 HOH HOH . 
H 4 HOH B 21 521 23 HOH HOH . 
H 4 HOH B 22 522 85 HOH HOH . 
H 4 HOH B 23 523 39 HOH HOH . 
H 4 HOH B 24 524 81 HOH HOH . 
H 4 HOH B 25 525 129 HOH HOH . 
H 4 HOH B 26 526 35 HOH HOH . 
H 4 HOH B 27 527 70 HOH HOH . 
H 4 HOH B 28 528 86 HOH HOH . 
H 4 HOH B 29 529 6 HOH HOH . 
H 4 HOH B 30 530 152 HOH HOH . 
H 4 HOH B 31 531 5 HOH HOH . 
H 4 HOH B 32 532 71 HOH HOH . 
H 4 HOH B 33 533 58 HOH HOH . 
H 4 HOH B 34 534 122 HOH HOH . 
H 4 HOH B 35 535 56 HOH HOH . 
H 4 HOH B 36 536 157 HOH HOH . 
H 4 HOH B 37 537 42 HOH HOH . 
H 4 HOH B 38 538 139 HOH HOH . 
H 4 HOH B 39 539 105 HOH HOH . 
H 4 HOH B 40 540 128 HOH HOH . 
H 4 HOH B 41 541 10 HOH HOH . 
H 4 HOH B 42 542 161 HOH HOH . 
H 4 HOH B 43 543 24 HOH HOH . 
H 4 HOH B 44 544 40 HOH HOH . 
H 4 HOH B 45 545 21 HOH HOH . 
H 4 HOH B 46 546 153 HOH HOH . 
H 4 HOH B 47 547 104 HOH HOH . 
H 4 HOH B 48 548 146 HOH HOH . 
H 4 HOH B 49 549 18 HOH HOH . 
H 4 HOH B 50 550 57 HOH HOH . 
H 4 HOH B 51 551 165 HOH HOH . 
H 4 HOH B 52 552 120 HOH HOH . 
H 4 HOH B 53 553 136 HOH HOH . 
H 4 HOH B 54 554 163 HOH HOH . 
H 4 HOH B 55 555 164 HOH HOH . 
H 4 HOH B 56 556 103 HOH HOH . 
H 4 HOH B 57 557 115 HOH HOH . 
H 4 HOH B 58 558 88 HOH HOH . 
H 4 HOH B 59 559 166 HOH HOH . 
H 4 HOH B 60 560 148 HOH HOH . 
H 4 HOH B 61 561 162 HOH HOH . 
H 4 HOH B 62 562 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 1.232 -21.065 28.277 1 50.7 ? C1 EDO 401 A 1 
HETATM 2 O O1 EDO . . . C 2 2.483 -20.73 28.889 1 53.91 ? O1 EDO 401 A 1 
HETATM 3 C C2 EDO . . . C 2 1.182 -20.472 26.874 1 51.66 ? C2 EDO 401 A 1 
HETATM 4 O O2 EDO . . . C 2 2.265 -20.993 26.096 1 50.32 ? O2 EDO 401 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#