data_6GVX # _model_server_result.job_id OwukG-3OU_ckZFickUQw1Q _model_server_result.datetime_utc '2024-12-01 00:08:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 6GVX # _exptl.entry_id 6GVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.488 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.58 _cell.angle_gamma 90 _cell.entry_id 6GVX _cell.length_a 65.475 _cell.length_b 80.074 _cell.length_c 77.975 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C24 H25 N5 O' _chem_comp.formula_weight 399.488 _chem_comp.id TAK _chem_comp.mon_nstd_flag . _chem_comp.name 6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Dorsomorphin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TAK sing 299 n n C1 N1 TAK sing 300 n n C2 C3 TAK sing 301 n n C3 C4 TAK sing 302 n n C4 C5 TAK sing 303 n n C5 N1 TAK sing 304 n n N1 C6 TAK sing 305 n n C6 C7 TAK sing 306 n n C7 O1 TAK sing 307 n n O1 C8 TAK sing 308 n n C8 C9 TAK doub 309 n y C8 C11 TAK sing 310 n y C9 C10 TAK sing 311 n y C10 C13 TAK doub 312 n y C11 C12 TAK doub 313 n y C12 C13 TAK sing 314 n y C13 C14 TAK sing 315 n y C14 C15 TAK doub 316 n y C14 C16 TAK sing 317 n y C15 N3 TAK sing 318 n y C16 N2 TAK doub 319 n y N2 C17 TAK sing 320 n y C17 N3 TAK sing 321 n y C17 C19 TAK doub 322 n y N3 N4 TAK sing 323 n y N4 C18 TAK doub 324 n y C18 C19 TAK sing 325 n y C19 C20 TAK sing 326 n y C20 C21 TAK doub 327 n y C20 C24 TAK sing 328 n y C21 C22 TAK sing 329 n y C22 N5 TAK doub 330 n y N5 C23 TAK sing 331 n y C23 C24 TAK doub 332 n y C1 H1 TAK sing 333 n n C1 H1A TAK sing 334 n n C2 H2 TAK sing 335 n n C2 H2A TAK sing 336 n n C3 H3 TAK sing 337 n n C3 H3A TAK sing 338 n n C4 H4 TAK sing 339 n n C4 H4A TAK sing 340 n n C5 H5 TAK sing 341 n n C5 H5A TAK sing 342 n n C6 H6 TAK sing 343 n n C6 H6A TAK sing 344 n n C7 H7 TAK sing 345 n n C7 H7A TAK sing 346 n n C9 H9 TAK sing 347 n n C10 H10 TAK sing 348 n n C11 H11 TAK sing 349 n n C12 H12 TAK sing 350 n n C15 H15 TAK sing 351 n n C16 H16 TAK sing 352 n n C18 H18 TAK sing 353 n n C21 H21 TAK sing 354 n n C22 H22 TAK sing 355 n n C23 H23 TAK sing 356 n n C24 H24 TAK sing 357 n n # _atom_sites.entry_id 6GVX _atom_sites.fract_transf_matrix[1][1] 0.015273 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005736 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 401 1 EDO EDO . D 3 TAK A 1 402 1 TAK TAK . E 2 EDO B 1 401 2 EDO EDO . F 3 TAK B 1 402 2 TAK TAK . G 4 HOH A 1 501 13 HOH HOH . G 4 HOH A 2 502 130 HOH HOH . G 4 HOH A 3 503 62 HOH HOH . G 4 HOH A 4 504 133 HOH HOH . G 4 HOH A 5 505 33 HOH HOH . G 4 HOH A 6 506 126 HOH HOH . G 4 HOH A 7 507 114 HOH HOH . G 4 HOH A 8 508 90 HOH HOH . G 4 HOH A 9 509 44 HOH HOH . G 4 HOH A 10 510 41 HOH HOH . G 4 HOH A 11 511 2 HOH HOH . G 4 HOH A 12 512 156 HOH HOH . G 4 HOH A 13 513 65 HOH HOH . G 4 HOH A 14 514 66 HOH HOH . G 4 HOH A 15 515 8 HOH HOH . G 4 HOH A 16 516 49 HOH HOH . G 4 HOH A 17 517 113 HOH HOH . G 4 HOH A 18 518 12 HOH HOH . G 4 HOH A 19 519 72 HOH HOH . G 4 HOH A 20 520 64 HOH HOH . G 4 HOH A 21 521 95 HOH HOH . G 4 HOH A 22 522 78 HOH HOH . G 4 HOH A 23 523 27 HOH HOH . G 4 HOH A 24 524 46 HOH HOH . G 4 HOH A 25 525 89 HOH HOH . G 4 HOH A 26 526 100 HOH HOH . G 4 HOH A 27 527 48 HOH HOH . G 4 HOH A 28 528 4 HOH HOH . G 4 HOH A 29 529 125 HOH HOH . G 4 HOH A 30 530 87 HOH HOH . G 4 HOH A 31 531 43 HOH HOH . G 4 HOH A 32 532 60 HOH HOH . G 4 HOH A 33 533 73 HOH HOH . G 4 HOH A 34 534 106 HOH HOH . G 4 HOH A 35 535 74 HOH HOH . G 4 HOH A 36 536 134 HOH HOH . G 4 HOH A 37 537 16 HOH HOH . G 4 HOH A 38 538 147 HOH HOH . G 4 HOH A 39 539 91 HOH HOH . G 4 HOH A 40 540 17 HOH HOH . G 4 HOH A 41 541 144 HOH HOH . G 4 HOH A 42 542 30 HOH HOH . G 4 HOH A 43 543 3 HOH HOH . G 4 HOH A 44 544 94 HOH HOH . G 4 HOH A 45 545 29 HOH HOH . G 4 HOH A 46 546 132 HOH HOH . G 4 HOH A 47 547 101 HOH HOH . G 4 HOH A 48 548 75 HOH HOH . G 4 HOH A 49 549 14 HOH HOH . G 4 HOH A 50 550 111 HOH HOH . G 4 HOH A 51 551 63 HOH HOH . G 4 HOH A 52 552 96 HOH HOH . G 4 HOH A 53 553 150 HOH HOH . G 4 HOH A 54 554 76 HOH HOH . G 4 HOH A 55 555 167 HOH HOH . G 4 HOH A 56 556 110 HOH HOH . G 4 HOH A 57 557 102 HOH HOH . G 4 HOH A 58 558 107 HOH HOH . G 4 HOH A 59 559 154 HOH HOH . G 4 HOH A 60 560 149 HOH HOH . G 4 HOH A 61 561 137 HOH HOH . G 4 HOH A 62 562 155 HOH HOH . G 4 HOH A 63 563 31 HOH HOH . G 4 HOH A 64 564 108 HOH HOH . G 4 HOH A 65 565 9 HOH HOH . G 4 HOH A 66 566 93 HOH HOH . G 4 HOH A 67 567 143 HOH HOH . G 4 HOH A 68 568 92 HOH HOH . G 4 HOH A 69 569 159 HOH HOH . G 4 HOH A 70 570 79 HOH HOH . G 4 HOH A 71 571 145 HOH HOH . H 4 HOH B 1 501 28 HOH HOH . H 4 HOH B 2 502 22 HOH HOH . H 4 HOH B 3 503 54 HOH HOH . H 4 HOH B 4 504 69 HOH HOH . H 4 HOH B 5 505 82 HOH HOH . H 4 HOH B 6 506 55 HOH HOH . H 4 HOH B 7 507 83 HOH HOH . H 4 HOH B 8 508 19 HOH HOH . H 4 HOH B 9 509 84 HOH HOH . H 4 HOH B 10 510 26 HOH HOH . H 4 HOH B 11 511 7 HOH HOH . H 4 HOH B 12 512 118 HOH HOH . H 4 HOH B 13 513 68 HOH HOH . H 4 HOH B 14 514 11 HOH HOH . H 4 HOH B 15 515 140 HOH HOH . H 4 HOH B 16 516 38 HOH HOH . H 4 HOH B 17 517 51 HOH HOH . H 4 HOH B 18 518 116 HOH HOH . H 4 HOH B 19 519 52 HOH HOH . H 4 HOH B 20 520 117 HOH HOH . H 4 HOH B 21 521 23 HOH HOH . H 4 HOH B 22 522 85 HOH HOH . H 4 HOH B 23 523 39 HOH HOH . H 4 HOH B 24 524 81 HOH HOH . H 4 HOH B 25 525 129 HOH HOH . H 4 HOH B 26 526 35 HOH HOH . H 4 HOH B 27 527 70 HOH HOH . H 4 HOH B 28 528 86 HOH HOH . H 4 HOH B 29 529 6 HOH HOH . H 4 HOH B 30 530 152 HOH HOH . H 4 HOH B 31 531 5 HOH HOH . H 4 HOH B 32 532 71 HOH HOH . H 4 HOH B 33 533 58 HOH HOH . H 4 HOH B 34 534 122 HOH HOH . H 4 HOH B 35 535 56 HOH HOH . H 4 HOH B 36 536 157 HOH HOH . H 4 HOH B 37 537 42 HOH HOH . H 4 HOH B 38 538 139 HOH HOH . H 4 HOH B 39 539 105 HOH HOH . H 4 HOH B 40 540 128 HOH HOH . H 4 HOH B 41 541 10 HOH HOH . H 4 HOH B 42 542 161 HOH HOH . H 4 HOH B 43 543 24 HOH HOH . H 4 HOH B 44 544 40 HOH HOH . H 4 HOH B 45 545 21 HOH HOH . H 4 HOH B 46 546 153 HOH HOH . H 4 HOH B 47 547 104 HOH HOH . H 4 HOH B 48 548 146 HOH HOH . H 4 HOH B 49 549 18 HOH HOH . H 4 HOH B 50 550 57 HOH HOH . H 4 HOH B 51 551 165 HOH HOH . H 4 HOH B 52 552 120 HOH HOH . H 4 HOH B 53 553 136 HOH HOH . H 4 HOH B 54 554 163 HOH HOH . H 4 HOH B 55 555 164 HOH HOH . H 4 HOH B 56 556 103 HOH HOH . H 4 HOH B 57 557 115 HOH HOH . H 4 HOH B 58 558 88 HOH HOH . H 4 HOH B 59 559 166 HOH HOH . H 4 HOH B 60 560 148 HOH HOH . H 4 HOH B 61 561 162 HOH HOH . H 4 HOH B 62 562 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TAK . A . F 3 1.443 -2.564 -10.192 0.5 68.82 ? C1 TAK 402 B 1 HETATM 2 C C1 TAK . B . F 3 3.15 -2.202 -5.541 0.5 69.82 ? C1 TAK 402 B 1 HETATM 3 C C2 TAK . A . F 3 0.354 -2.06 -11.134 0.5 67.64 ? C2 TAK 402 B 1 HETATM 4 C C2 TAK . B . F 3 2.762 -2.322 -4.072 0.5 69.12 ? C2 TAK 402 B 1 HETATM 5 C C3 TAK . A . F 3 -0.978 -1.951 -10.405 0.5 68.37 ? C3 TAK 402 B 1 HETATM 6 C C3 TAK . B . F 3 1.283 -2.011 -3.877 0.5 68.84 ? C3 TAK 402 B 1 HETATM 7 C C4 TAK . A . F 3 -0.878 -0.961 -9.251 0.5 68.72 ? C4 TAK 402 B 1 HETATM 8 C C4 TAK . B . F 3 0.867 -0.828 -4.741 0.5 69.29 ? C4 TAK 402 B 1 HETATM 9 C C5 TAK . A . F 3 0.487 -1.043 -8.576 0.5 69.6 ? C5 TAK 402 B 1 HETATM 10 C C5 TAK . B . F 3 1.104 -1.128 -6.217 0.5 70.33 ? C5 TAK 402 B 1 HETATM 11 N N1 TAK . A . F 3 1.052 -2.385 -8.783 0.5 70.46 ? N1 TAK 402 B 1 HETATM 12 N N1 TAK . B . F 3 1.943 -2.328 -6.372 0.5 70.78 ? N1 TAK 402 B 1 HETATM 13 C C6 TAK . A . F 3 2.238 -2.551 -7.931 0.5 71.72 ? C6 TAK 402 B 1 HETATM 14 C C6 TAK . B . F 3 2.304 -2.475 -7.791 0.5 71.63 ? C6 TAK 402 B 1 HETATM 15 C C7 TAK . A . F 3 2.814 -3.948 -8.132 0.5 72.54 ? C7 TAK 402 B 1 HETATM 16 C C7 TAK . B . F 3 2.828 -3.878 -8.082 0.5 72.4 ? C7 TAK 402 B 1 HETATM 17 O O1 TAK . A . F 3 4.225 -3.917 -7.935 0.5 72.49 ? O1 TAK 402 B 1 HETATM 18 O O1 TAK . B . F 3 4.245 -3.902 -7.93 0.5 72.47 ? O1 TAK 402 B 1 HETATM 19 C C8 TAK . . . F 3 5.016 -4.794 -8.628 1 70.85 ? C8 TAK 402 B 1 HETATM 20 C C9 TAK . . . F 3 4.478 -5.979 -9.124 1 64.61 ? C9 TAK 402 B 1 HETATM 21 C C10 TAK . . . F 3 5.285 -6.867 -9.832 1 60.11 ? C10 TAK 402 B 1 HETATM 22 C C11 TAK . . . F 3 6.356 -4.499 -8.837 1 69.53 ? C11 TAK 402 B 1 HETATM 23 C C12 TAK . . . F 3 7.158 -5.383 -9.542 1 64.87 ? C12 TAK 402 B 1 HETATM 24 C C13 TAK . . . F 3 6.629 -6.567 -10.036 1 56.37 ? C13 TAK 402 B 1 HETATM 25 C C14 TAK . . . F 3 7.525 -7.482 -10.789 1 44.19 ? C14 TAK 402 B 1 HETATM 26 C C15 TAK . . . F 3 8.58 -6.927 -11.506 1 36.74 ? C15 TAK 402 B 1 HETATM 27 C C16 TAK . . . F 3 7.338 -8.865 -10.783 1 42.75 ? C16 TAK 402 B 1 HETATM 28 N N2 TAK . . . F 3 8.177 -9.65 -11.478 1 41.95 ? N2 TAK 402 B 1 HETATM 29 C C17 TAK . . . F 3 9.183 -9.051 -12.159 1 38.25 ? C17 TAK 402 B 1 HETATM 30 N N3 TAK . . . F 3 9.38 -7.75 -12.181 1 36.92 ? N3 TAK 402 B 1 HETATM 31 N N4 TAK . . . F 3 10.471 -7.357 -12.949 1 39.54 ? N4 TAK 402 B 1 HETATM 32 C C18 TAK . . . F 3 10.96 -8.533 -13.423 1 42.41 ? C18 TAK 402 B 1 HETATM 33 C C19 TAK . . . F 3 10.185 -9.603 -12.953 1 41.13 ? C19 TAK 402 B 1 HETATM 34 C C20 TAK . . . F 3 10.421 -11.04 -13.275 1 43.38 ? C20 TAK 402 B 1 HETATM 35 C C21 TAK . . . F 3 9.872 -12.06 -12.51 1 45.69 ? C21 TAK 402 B 1 HETATM 36 C C22 TAK . . . F 3 10.125 -13.381 -12.86 1 46.11 ? C22 TAK 402 B 1 HETATM 37 N N5 TAK . . . F 3 10.888 -13.672 -13.923 1 43.22 ? N5 TAK 402 B 1 HETATM 38 C C23 TAK . . . F 3 11.427 -12.707 -14.679 1 41.03 ? C23 TAK 402 B 1 HETATM 39 C C24 TAK . . . F 3 11.207 -11.37 -14.372 1 41.65 ? C24 TAK 402 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 39 #