data_6GWC # _model_server_result.job_id Rh-VIIjae4R8lmOdVQ51FA _model_server_result.datetime_utc '2024-12-23 05:00:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gwc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 6GWC # _exptl.entry_id 6GWC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GWC _cell.length_a 102.346 _cell.length_b 102.346 _cell.length_c 216.207 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GWC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O3G GTP . A GTP 600 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 D O2B GTP . A GTP 600 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc3 E MG MG . A MG 601 1_555 K O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc4 E MG MG . A MG 601 1_555 K O HOH . A HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc5 E MG MG . A MG 601 1_555 K O HOH . A HOH 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc6 E MG MG . A MG 601 1_555 K O HOH . A HOH 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc7 G O3G GTP . B GTP 600 1_555 H MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc8 H MG MG . B MG 601 1_555 L O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc9 H MG MG . B MG 601 1_555 L O HOH . B HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 312 n n C1 C2 PGE sing 313 n n C1 H1 PGE sing 314 n n C1 H12 PGE sing 315 n n O1 HO1 PGE sing 316 n n C2 O2 PGE sing 317 n n C2 H2 PGE sing 318 n n C2 H22 PGE sing 319 n n O2 C3 PGE sing 320 n n C3 C4 PGE sing 321 n n C3 H3 PGE sing 322 n n C3 H32 PGE sing 323 n n C4 O3 PGE sing 324 n n C4 H4 PGE sing 325 n n C4 H42 PGE sing 326 n n O4 C6 PGE sing 327 n n O4 HO4 PGE sing 328 n n C6 C5 PGE sing 329 n n C6 H6 PGE sing 330 n n C6 H62 PGE sing 331 n n C5 O3 PGE sing 332 n n C5 H5 PGE sing 333 n n C5 H52 PGE sing 334 n n # _atom_sites.entry_id 6GWC _atom_sites.fract_transf_matrix[1][1] 0.009771 _atom_sites.fract_transf_matrix[1][2] 0.005641 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 600 600 GTP GTP . E 5 MG A 1 601 601 MG MG . F 6 PGE A 1 602 602 PGE PGE . G 4 GTP B 1 600 600 GTP GTP . H 5 MG B 1 601 601 MG MG . I 7 MES B 1 602 602 MES MES . J 7 MES B 1 603 603 MES MES . K 8 HOH A 1 701 147 HOH HOH . K 8 HOH A 2 702 151 HOH HOH . K 8 HOH A 3 703 158 HOH HOH . K 8 HOH A 4 704 105 HOH HOH . K 8 HOH A 5 705 156 HOH HOH . K 8 HOH A 6 706 116 HOH HOH . K 8 HOH A 7 707 71 HOH HOH . K 8 HOH A 8 708 121 HOH HOH . K 8 HOH A 9 709 26 HOH HOH . K 8 HOH A 10 710 35 HOH HOH . K 8 HOH A 11 711 57 HOH HOH . K 8 HOH A 12 712 4 HOH HOH . K 8 HOH A 13 713 154 HOH HOH . K 8 HOH A 14 714 66 HOH HOH . K 8 HOH A 15 715 148 HOH HOH . K 8 HOH A 16 716 74 HOH HOH . K 8 HOH A 17 717 72 HOH HOH . K 8 HOH A 18 718 5 HOH HOH . K 8 HOH A 19 719 3 HOH HOH . K 8 HOH A 20 720 19 HOH HOH . K 8 HOH A 21 721 92 HOH HOH . K 8 HOH A 22 722 150 HOH HOH . K 8 HOH A 23 723 6 HOH HOH . K 8 HOH A 24 724 51 HOH HOH . K 8 HOH A 25 725 157 HOH HOH . K 8 HOH A 26 726 16 HOH HOH . K 8 HOH A 27 727 127 HOH HOH . K 8 HOH A 28 728 38 HOH HOH . K 8 HOH A 29 729 173 HOH HOH . K 8 HOH A 30 730 22 HOH HOH . K 8 HOH A 31 731 45 HOH HOH . K 8 HOH A 32 732 28 HOH HOH . K 8 HOH A 33 733 111 HOH HOH . K 8 HOH A 34 734 8 HOH HOH . K 8 HOH A 35 735 65 HOH HOH . K 8 HOH A 36 736 78 HOH HOH . K 8 HOH A 37 737 102 HOH HOH . K 8 HOH A 38 738 162 HOH HOH . K 8 HOH A 39 739 161 HOH HOH . K 8 HOH A 40 740 2 HOH HOH . K 8 HOH A 41 741 113 HOH HOH . K 8 HOH A 42 742 129 HOH HOH . K 8 HOH A 43 743 82 HOH HOH . K 8 HOH A 44 744 133 HOH HOH . K 8 HOH A 45 745 164 HOH HOH . K 8 HOH A 46 746 119 HOH HOH . K 8 HOH A 47 747 21 HOH HOH . K 8 HOH A 48 748 67 HOH HOH . K 8 HOH A 49 749 152 HOH HOH . K 8 HOH A 50 750 149 HOH HOH . K 8 HOH A 51 751 63 HOH HOH . K 8 HOH A 52 752 10 HOH HOH . K 8 HOH A 53 753 50 HOH HOH . K 8 HOH A 54 754 61 HOH HOH . K 8 HOH A 55 755 56 HOH HOH . K 8 HOH A 56 756 103 HOH HOH . K 8 HOH A 57 757 73 HOH HOH . K 8 HOH A 58 758 123 HOH HOH . K 8 HOH A 59 759 76 HOH HOH . K 8 HOH A 60 760 25 HOH HOH . K 8 HOH A 61 761 90 HOH HOH . K 8 HOH A 62 762 53 HOH HOH . K 8 HOH A 63 763 83 HOH HOH . K 8 HOH A 64 764 136 HOH HOH . K 8 HOH A 65 765 39 HOH HOH . K 8 HOH A 66 766 93 HOH HOH . K 8 HOH A 67 767 18 HOH HOH . K 8 HOH A 68 768 176 HOH HOH . K 8 HOH A 69 769 112 HOH HOH . K 8 HOH A 70 770 101 HOH HOH . K 8 HOH A 71 771 174 HOH HOH . K 8 HOH A 72 772 68 HOH HOH . K 8 HOH A 73 773 60 HOH HOH . K 8 HOH A 74 774 27 HOH HOH . K 8 HOH A 75 775 30 HOH HOH . K 8 HOH A 76 776 36 HOH HOH . K 8 HOH A 77 777 110 HOH HOH . K 8 HOH A 78 778 17 HOH HOH . K 8 HOH A 79 779 118 HOH HOH . K 8 HOH A 80 780 23 HOH HOH . K 8 HOH A 81 781 15 HOH HOH . K 8 HOH A 82 782 163 HOH HOH . K 8 HOH A 83 783 106 HOH HOH . K 8 HOH A 84 784 14 HOH HOH . K 8 HOH A 85 785 104 HOH HOH . K 8 HOH A 86 786 172 HOH HOH . K 8 HOH A 87 787 75 HOH HOH . K 8 HOH A 88 788 155 HOH HOH . K 8 HOH A 89 789 41 HOH HOH . K 8 HOH A 90 790 97 HOH HOH . K 8 HOH A 91 791 169 HOH HOH . K 8 HOH A 92 792 89 HOH HOH . K 8 HOH A 93 793 167 HOH HOH . K 8 HOH A 94 794 143 HOH HOH . K 8 HOH A 95 795 43 HOH HOH . K 8 HOH A 96 796 98 HOH HOH . K 8 HOH A 97 797 140 HOH HOH . K 8 HOH A 98 798 100 HOH HOH . K 8 HOH A 99 799 125 HOH HOH . K 8 HOH A 100 800 88 HOH HOH . K 8 HOH A 101 801 159 HOH HOH . K 8 HOH A 102 802 55 HOH HOH . K 8 HOH A 103 803 114 HOH HOH . K 8 HOH A 104 804 86 HOH HOH . K 8 HOH A 105 805 108 HOH HOH . K 8 HOH A 106 806 94 HOH HOH . K 8 HOH A 107 807 96 HOH HOH . K 8 HOH A 108 808 40 HOH HOH . K 8 HOH A 109 809 31 HOH HOH . K 8 HOH A 110 810 80 HOH HOH . K 8 HOH A 111 811 87 HOH HOH . K 8 HOH A 112 812 79 HOH HOH . K 8 HOH A 113 813 32 HOH HOH . K 8 HOH A 114 814 144 HOH HOH . K 8 HOH A 115 815 131 HOH HOH . K 8 HOH A 116 816 138 HOH HOH . L 8 HOH B 1 701 117 HOH HOH . L 8 HOH B 2 702 20 HOH HOH . L 8 HOH B 3 703 153 HOH HOH . L 8 HOH B 4 704 168 HOH HOH . L 8 HOH B 5 705 7 HOH HOH . L 8 HOH B 6 706 1 HOH HOH . L 8 HOH B 7 707 120 HOH HOH . L 8 HOH B 8 708 81 HOH HOH . L 8 HOH B 9 709 44 HOH HOH . L 8 HOH B 10 710 37 HOH HOH . L 8 HOH B 11 711 170 HOH HOH . L 8 HOH B 12 712 142 HOH HOH . L 8 HOH B 13 713 24 HOH HOH . L 8 HOH B 14 714 171 HOH HOH . L 8 HOH B 15 715 49 HOH HOH . L 8 HOH B 16 716 132 HOH HOH . L 8 HOH B 17 717 11 HOH HOH . L 8 HOH B 18 718 146 HOH HOH . L 8 HOH B 19 719 175 HOH HOH . L 8 HOH B 20 720 141 HOH HOH . L 8 HOH B 21 721 91 HOH HOH . L 8 HOH B 22 722 48 HOH HOH . L 8 HOH B 23 723 42 HOH HOH . L 8 HOH B 24 724 34 HOH HOH . L 8 HOH B 25 725 124 HOH HOH . L 8 HOH B 26 726 64 HOH HOH . L 8 HOH B 27 727 109 HOH HOH . L 8 HOH B 28 728 107 HOH HOH . L 8 HOH B 29 729 122 HOH HOH . L 8 HOH B 30 730 69 HOH HOH . L 8 HOH B 31 731 29 HOH HOH . M 8 HOH C 1 301 84 HOH HOH . M 8 HOH C 2 302 58 HOH HOH . M 8 HOH C 3 303 62 HOH HOH . M 8 HOH C 4 304 47 HOH HOH . M 8 HOH C 5 305 137 HOH HOH . M 8 HOH C 6 306 33 HOH HOH . M 8 HOH C 7 307 9 HOH HOH . M 8 HOH C 8 308 139 HOH HOH . M 8 HOH C 9 309 128 HOH HOH . M 8 HOH C 10 310 46 HOH HOH . M 8 HOH C 11 311 85 HOH HOH . M 8 HOH C 12 312 115 HOH HOH . M 8 HOH C 13 313 70 HOH HOH . M 8 HOH C 14 314 160 HOH HOH . M 8 HOH C 15 315 166 HOH HOH . M 8 HOH C 16 316 54 HOH HOH . M 8 HOH C 17 317 12 HOH HOH . M 8 HOH C 18 318 52 HOH HOH . M 8 HOH C 19 319 145 HOH HOH . M 8 HOH C 20 320 13 HOH HOH . M 8 HOH C 21 321 59 HOH HOH . M 8 HOH C 22 322 165 HOH HOH . M 8 HOH C 23 323 135 HOH HOH . M 8 HOH C 24 324 95 HOH HOH . M 8 HOH C 25 325 126 HOH HOH . M 8 HOH C 26 326 77 HOH HOH . M 8 HOH C 27 327 99 HOH HOH . M 8 HOH C 28 328 134 HOH HOH . M 8 HOH C 29 329 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . F 6 63.505 -22.12 -14.499 1 119.5 ? C1 PGE 602 A 1 HETATM 2 O O1 PGE . . . F 6 64.819 -22.048 -15.017 1 118.03 ? O1 PGE 602 A 1 HETATM 3 C C2 PGE . . . F 6 62.608 -22.958 -15.358 1 119.09 ? C2 PGE 602 A 1 HETATM 4 O O2 PGE . . . F 6 61.78 -22.128 -16.161 1 114.38 ? O2 PGE 602 A 1 HETATM 5 C C3 PGE . . . F 6 61.13 -22.8 -17.232 1 112.3 ? C3 PGE 602 A 1 HETATM 6 C C4 PGE . . . F 6 62.004 -22.761 -18.432 1 110.54 ? C4 PGE 602 A 1 HETATM 7 O O4 PGE . . . F 6 60.384 -22.579 -22.616 1 105.72 ? O4 PGE 602 A 1 HETATM 8 C C6 PGE . . . F 6 61.399 -23.315 -21.971 1 108.09 ? C6 PGE 602 A 1 HETATM 9 C C5 PGE . . . F 6 61.971 -22.586 -20.797 1 108.19 ? C5 PGE 602 A 1 HETATM 10 O O3 PGE . . . F 6 61.235 -22.887 -19.619 1 109.67 ? O3 PGE 602 A 1 HETATM 11 H H1 PGE . . . F 6 63.511 -22.466 -13.466 1 122.34 ? H1 PGE 602 A 1 HETATM 12 H H12 PGE . . . F 6 63.173 -21.083 -14.479 1 119.4 ? H12 PGE 602 A 1 HETATM 13 H HO1 PGE . . . F 6 65.431 -22.428 -14.334 1 119.97 ? HO1 PGE 602 A 1 HETATM 14 H H2 PGE . . . F 6 63.208 -23.621 -15.98 1 120.68 ? H2 PGE 602 A 1 HETATM 15 H H22 PGE . . . F 6 61.997 -23.607 -14.734 1 121.96 ? H22 PGE 602 A 1 HETATM 16 H H3 PGE . . . F 6 60.889 -23.827 -16.965 1 114.5 ? H3 PGE 602 A 1 HETATM 17 H H32 PGE . . . F 6 60.181 -22.316 -17.461 1 112.17 ? H32 PGE 602 A 1 HETATM 18 H H4 PGE . . . F 6 62.563 -21.828 -18.432 1 110.43 ? H4 PGE 602 A 1 HETATM 19 H H42 PGE . . . F 6 62.752 -23.55 -18.377 1 112.28 ? H42 PGE 602 A 1 HETATM 20 H HO4 PGE . . . F 6 59.92 -23.192 -23.245 1 107.48 ? HO4 PGE 602 A 1 HETATM 21 H H6 PGE . . . F 6 62.152 -23.462 -22.744 1 108.73 ? H6 PGE 602 A 1 HETATM 22 H H62 PGE . . . F 6 61.039 -24.302 -21.687 1 110.79 ? H62 PGE 602 A 1 HETATM 23 H H5 PGE . . . F 6 61.976 -21.513 -20.984 1 107.53 ? H5 PGE 602 A 1 HETATM 24 H H52 PGE . . . F 6 63.013 -22.874 -20.669 1 109.38 ? H52 PGE 602 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 24 #