data_6GWD
#
_model_server_result.job_id            JpkgLj7njxMEXKc8f06mow 
_model_server_result.datetime_utc      '2024-10-19 03:37:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gwd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":600}' 
#
_entry.id    6GWD 
#
_exptl.entry_id    6GWD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.76 
_cell.angle_gamma         90 
_cell.entry_id            6GWD 
_cell.length_a            450.8 
_cell.length_b            53.84 
_cell.length_c            229.62 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GWD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 M N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 71 A GLU 71 1_555 K MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc2 J O1G GTP . A GTP 600 1_555 K MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc3 J O2G GTP . A GTP 600 1_555 K MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? 
metalc ? metalc4 J O2B GTP . A GTP 600 1_555 K MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc5 M O3G GTP . C GTP 600 1_555 N MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc6 M O2B GTP . C GTP 600 1_555 N MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc7 E OE1 GLU 71 E GLU 71 1_555 Q MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc8 E OE2 GLU 71 E GLU 71 1_555 Q MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc9 P O2B GTP . E GTP 600 1_555 Q MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 174 n n 
PG O2G GTP sing 175 n n 
PG O3G GTP sing 176 n n 
PG O3B GTP sing 177 n n 
O2G HOG2 GTP sing 178 n n 
O3G HOG3 GTP sing 179 n n 
O3B PB GTP sing 180 n n 
PB O1B GTP doub 181 n n 
PB O2B GTP sing 182 n n 
PB O3A GTP sing 183 n n 
O2B HOB2 GTP sing 184 n n 
O3A PA GTP sing 185 n n 
PA O1A GTP doub 186 n n 
PA O2A GTP sing 187 n n 
PA O5' GTP sing 188 n n 
O2A HOA2 GTP sing 189 n n 
O5' C5' GTP sing 190 n n 
C5' C4' GTP sing 191 n n 
C5' H5' GTP sing 192 n n 
C5' "H5''" GTP sing 193 n n 
C4' O4' GTP sing 194 n n 
C4' C3' GTP sing 195 n n 
C4' H4' GTP sing 196 n n 
O4' C1' GTP sing 197 n n 
C3' O3' GTP sing 198 n n 
C3' C2' GTP sing 199 n n 
C3' H3' GTP sing 200 n n 
O3' HO3' GTP sing 201 n n 
C2' O2' GTP sing 202 n n 
C2' C1' GTP sing 203 n n 
C2' H2' GTP sing 204 n n 
O2' HO2' GTP sing 205 n n 
C1' N9 GTP sing 206 n n 
C1' H1' GTP sing 207 n n 
N9 C8 GTP sing 208 n y 
N9 C4 GTP sing 209 n y 
C8 N7 GTP doub 210 n y 
C8 H8 GTP sing 211 n n 
N7 C5 GTP sing 212 n y 
C5 C6 GTP sing 213 n n 
C5 C4 GTP doub 214 n y 
C6 O6 GTP doub 215 n n 
C6 N1 GTP sing 216 n n 
N1 C2 GTP sing 217 n n 
N1 HN1 GTP sing 218 n n 
C2 N2 GTP sing 219 n n 
C2 N3 GTP doub 220 n n 
N2 HN21 GTP sing 221 n n 
N2 HN22 GTP sing 222 n n 
N3 C4 GTP sing 223 n n 
#
_atom_sites.entry_id                     6GWD 
_atom_sites.fract_transf_matrix[1][1]    0.002218 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001217 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018574 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004968 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 GTP A 1 600 600 GTP GTP . 
K 5 MG A 1 601 601 MG MG . 
L 6 GDP B 1 600 600 GDP GDP . 
M 4 GTP C 1 600 600 GTP GTP . 
N 5 MG C 1 601 601 MG MG . 
O 6 GDP D 1 600 600 GDP GDP . 
P 4 GTP E 1 600 600 GTP GTP . 
Q 5 MG E 1 601 601 MG MG . 
R 6 GDP F 1 600 600 GDP GDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . M 4 -119.811 -5.9 174.502 1 83.22 ? PG GTP 600 C 1 
HETATM 2 O O1G GTP . . . M 4 -120.831 -5.527 173.568 1 83.58 ? O1G GTP 600 C 1 
HETATM 3 O O2G GTP . . . M 4 -120.242 -7.061 175.441 1 80.63 ? O2G GTP 600 C 1 
HETATM 4 O O3G GTP . . . M 4 -119.242 -4.698 175.303 1 82.2 ? O3G GTP 600 C 1 
HETATM 5 O O3B GTP . . . M 4 -118.57 -6.448 173.672 1 83.89 ? O3B GTP 600 C 1 
HETATM 6 P PB GTP . . . M 4 -117.12 -6.859 174.179 1 84.7 ? PB GTP 600 C 1 
HETATM 7 O O1B GTP . . . M 4 -116.121 -6.757 173.098 1 84.56 ? O1B GTP 600 C 1 
HETATM 8 O O2B GTP . . . M 4 -116.76 -5.966 175.377 1 88.58 ? O2B GTP 600 C 1 
HETATM 9 O O3A GTP . . . M 4 -117.273 -8.377 174.632 1 83.32 ? O3A GTP 600 C 1 
HETATM 10 P PA GTP . . . M 4 -116.268 -9.518 175.1 1 79.08 ? PA GTP 600 C 1 
HETATM 11 O O1A GTP . . . M 4 -114.888 -9.138 174.727 1 81.74 ? O1A GTP 600 C 1 
HETATM 12 O O2A GTP . . . M 4 -116.436 -9.557 176.632 1 83.17 ? O2A GTP 600 C 1 
HETATM 13 O O5' GTP . . . M 4 -116.679 -10.917 174.416 1 66.12 ? O5' GTP 600 C 1 
HETATM 14 C C5' GTP . . . M 4 -117.158 -12.077 175.13 1 57.07 ? C5' GTP 600 C 1 
HETATM 15 C C4' GTP . . . M 4 -116.357 -13.276 174.681 1 49.5 ? C4' GTP 600 C 1 
HETATM 16 O O4' GTP . . . M 4 -114.958 -13.03 174.946 1 51.98 ? O4' GTP 600 C 1 
HETATM 17 C C3' GTP . . . M 4 -116.655 -14.583 175.401 1 48.29 ? C3' GTP 600 C 1 
HETATM 18 O O3' GTP . . . M 4 -116.232 -15.681 174.594 1 44.78 ? O3' GTP 600 C 1 
HETATM 19 C C2' GTP . . . M 4 -115.796 -14.438 176.651 1 53.66 ? C2' GTP 600 C 1 
HETATM 20 O O2' GTP . . . M 4 -115.537 -15.716 177.216 1 60.38 ? O2' GTP 600 C 1 
HETATM 21 C C1' GTP . . . M 4 -114.531 -13.826 176.04 1 51.69 ? C1' GTP 600 C 1 
HETATM 22 N N9 GTP . . . M 4 -113.733 -12.976 176.951 1 57.17 ? N9 GTP 600 C 1 
HETATM 23 C C8 GTP . . . M 4 -114.14 -11.815 177.541 1 61.84 ? C8 GTP 600 C 1 
HETATM 24 N N7 GTP . . . M 4 -113.192 -11.203 178.209 1 64.79 ? N7 GTP 600 C 1 
HETATM 25 C C5 GTP . . . M 4 -112.095 -12.035 178.076 1 61.92 ? C5 GTP 600 C 1 
HETATM 26 C C6 GTP . . . M 4 -110.766 -11.949 178.63 1 63.1 ? C6 GTP 600 C 1 
HETATM 27 O O6 GTP . . . M 4 -110.282 -11.032 179.29 1 67.37 ? O6 GTP 600 C 1 
HETATM 28 N N1 GTP . . . M 4 -110.001 -13.046 178.303 1 58.37 ? N1 GTP 600 C 1 
HETATM 29 C C2 GTP . . . M 4 -110.415 -14.092 177.535 1 56.54 ? C2 GTP 600 C 1 
HETATM 30 N N2 GTP . . . M 4 -109.546 -15.082 177.349 1 54.63 ? N2 GTP 600 C 1 
HETATM 31 N N3 GTP . . . M 4 -111.63 -14.174 176.998 1 56.96 ? N3 GTP 600 C 1 
HETATM 32 C C4 GTP . . . M 4 -112.413 -13.13 177.309 1 57.61 ? C4 GTP 600 C 1 
HETATM 33 H H5' GTP . . . M 4 -117.142 -11.922 176.208 1 57.57 ? H5' GTP 600 C 1 
HETATM 34 H "H5''" GTP . . . M 4 -118.205 -12.14 174.836 1 53.08 ? "H5''" GTP 600 C 1 
HETATM 35 H H4' GTP . . . M 4 -116.379 -13.395 173.598 1 39.24 ? H4' GTP 600 C 1 
HETATM 36 H H3' GTP . . . M 4 -117.707 -14.715 175.645 1 48.82 ? H3' GTP 600 C 1 
HETATM 37 H HO3' GTP . . . M 4 -116.333 -16.491 175.16 1 42.47 ? HO3' GTP 600 C 1 
HETATM 38 H H2' GTP . . . M 4 -116.271 -13.752 177.35 1 55.57 ? H2' GTP 600 C 1 
HETATM 39 H HO2' GTP . . . M 4 -115.942 -15.685 178.122 1 62.65 ? HO2' GTP 600 C 1 
HETATM 40 H H1' GTP . . . M 4 -113.868 -14.589 175.635 1 42.3 ? H1' GTP 600 C 1 
HETATM 41 H H8 GTP . . . M 4 -115.168 -11.464 177.485 1 60.88 ? H8 GTP 600 C 1 
HETATM 42 H HN1 GTP . . . M 4 -109.042 -13.016 178.625 1 58.52 ? HN1 GTP 600 C 1 
HETATM 43 H HN21 GTP . . . M 4 -109.799 -15.864 176.756 1 48.58 ? HN21 GTP 600 C 1 
HETATM 44 H HN22 GTP . . . M 4 -108.636 -15.108 177.793 1 54.66 ? HN22 GTP 600 C 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#