data_6GWE # _model_server_result.job_id YWSb-YhU7BU12AeN2CSUzg _model_server_result.datetime_utc '2025-01-10 07:50:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gwe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 6GWE # _exptl.entry_id 6GWE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GWE _cell.length_a 55.943 _cell.length_b 80.914 _cell.length_c 159.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GWE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,O,R 1 1 B,C,K,L,M,N,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 42 1_555 A SG CYS 44 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 119 A CYS 122 1_555 D SG CYS 9 B CYS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 173 A CYS 168 1_555 A SG CYS 187 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf4 A SG CYS 201 A CYS 191 1_555 A SG CYS 231 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 9 L CYS 1 1_555 C SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 C SG CYS 28 H CYS 42 1_555 C SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf7 C SG CYS 173 H CYS 168 1_555 C SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf8 C SG CYS 201 H CYS 191 1_555 C SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A O ARG 233 A ARG 221 1_555 J NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc2 A O LYS 236 A LYS 224 1_555 J NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc3 J NA NA . A NA 306 1_555 O O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 J NA NA . A NA 306 1_555 O O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc5 J NA NA . A NA 306 1_555 O O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc6 J NA NA . A NA 306 1_555 O O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc7 C O ARG 233 H ARG 221 1_555 N NA NA . H NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc8 C O LYS 236 H LYS 224 1_555 N NA NA . H NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc9 N NA NA . H NA 304 1_555 Q O HOH . H HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc10 N NA NA . H NA 304 1_555 Q O HOH . H HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc11 N NA NA . H NA 304 1_555 Q O HOH . H HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc12 N NA NA . H NA 304 1_555 Q O HOH . H HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6GWE _atom_sites.fract_transf_matrix[1][1] 0.017875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012359 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006272 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ODB A 1 301 301 ODB FE9 . F 4 NAG A 1 302 302 NAG NAG . G 5 EDO A 1 303 303 EDO EDO . H 5 EDO A 1 304 304 EDO EDO . I 5 EDO A 1 305 305 EDO EDO . J 6 NA A 1 306 306 NA NA . K 3 ODB H 1 301 301 ODB FE9 . L 4 NAG H 1 302 302 NAG NAG . M 5 EDO H 1 303 303 EDO EDO . N 6 NA H 1 304 304 NA NA . O 7 HOH A 1 401 401 HOH HOH . O 7 HOH A 2 402 402 HOH HOH . O 7 HOH A 3 403 403 HOH HOH . O 7 HOH A 4 404 404 HOH HOH . O 7 HOH A 5 405 405 HOH HOH . O 7 HOH A 6 406 406 HOH HOH . O 7 HOH A 7 407 407 HOH HOH . O 7 HOH A 8 408 408 HOH HOH . O 7 HOH A 9 409 409 HOH HOH . O 7 HOH A 10 410 410 HOH HOH . O 7 HOH A 11 411 411 HOH HOH . O 7 HOH A 12 412 412 HOH HOH . O 7 HOH A 13 413 413 HOH HOH . O 7 HOH A 14 414 414 HOH HOH . O 7 HOH A 15 415 415 HOH HOH . O 7 HOH A 16 416 416 HOH HOH . O 7 HOH A 17 417 417 HOH HOH . O 7 HOH A 18 418 418 HOH HOH . O 7 HOH A 19 419 419 HOH HOH . O 7 HOH A 20 420 420 HOH HOH . O 7 HOH A 21 421 421 HOH HOH . O 7 HOH A 22 422 422 HOH HOH . O 7 HOH A 23 423 423 HOH HOH . O 7 HOH A 24 424 424 HOH HOH . O 7 HOH A 25 425 425 HOH HOH . O 7 HOH A 26 426 426 HOH HOH . O 7 HOH A 27 427 427 HOH HOH . O 7 HOH A 28 428 428 HOH HOH . O 7 HOH A 29 429 429 HOH HOH . O 7 HOH A 30 430 430 HOH HOH . O 7 HOH A 31 431 431 HOH HOH . O 7 HOH A 32 432 432 HOH HOH . O 7 HOH A 33 433 433 HOH HOH . O 7 HOH A 34 434 434 HOH HOH . O 7 HOH A 35 435 435 HOH HOH . O 7 HOH A 36 436 436 HOH HOH . O 7 HOH A 37 437 437 HOH HOH . O 7 HOH A 38 438 438 HOH HOH . O 7 HOH A 39 439 439 HOH HOH . O 7 HOH A 40 440 440 HOH HOH . O 7 HOH A 41 441 441 HOH HOH . O 7 HOH A 42 442 442 HOH HOH . O 7 HOH A 43 443 443 HOH HOH . O 7 HOH A 44 444 444 HOH HOH . O 7 HOH A 45 445 445 HOH HOH . O 7 HOH A 46 446 446 HOH HOH . O 7 HOH A 47 447 447 HOH HOH . O 7 HOH A 48 448 448 HOH HOH . O 7 HOH A 49 449 449 HOH HOH . O 7 HOH A 50 450 450 HOH HOH . O 7 HOH A 51 451 451 HOH HOH . P 7 HOH L 1 101 101 HOH HOH . P 7 HOH L 2 102 102 HOH HOH . P 7 HOH L 3 103 103 HOH HOH . P 7 HOH L 4 104 104 HOH HOH . P 7 HOH L 5 105 105 HOH HOH . P 7 HOH L 6 106 106 HOH HOH . P 7 HOH L 7 107 107 HOH HOH . Q 7 HOH H 1 401 401 HOH HOH . Q 7 HOH H 2 402 402 HOH HOH . Q 7 HOH H 3 403 403 HOH HOH . Q 7 HOH H 4 404 404 HOH HOH . Q 7 HOH H 5 405 405 HOH HOH . Q 7 HOH H 6 406 406 HOH HOH . Q 7 HOH H 7 407 407 HOH HOH . Q 7 HOH H 8 408 408 HOH HOH . Q 7 HOH H 9 409 409 HOH HOH . Q 7 HOH H 10 410 410 HOH HOH . Q 7 HOH H 11 411 411 HOH HOH . Q 7 HOH H 12 412 435 HOH HOH . Q 7 HOH H 13 413 412 HOH HOH . Q 7 HOH H 14 414 413 HOH HOH . Q 7 HOH H 15 415 414 HOH HOH . Q 7 HOH H 16 416 415 HOH HOH . Q 7 HOH H 17 417 416 HOH HOH . Q 7 HOH H 18 418 417 HOH HOH . Q 7 HOH H 19 419 418 HOH HOH . Q 7 HOH H 20 420 419 HOH HOH . Q 7 HOH H 21 421 420 HOH HOH . Q 7 HOH H 22 422 421 HOH HOH . Q 7 HOH H 23 423 422 HOH HOH . Q 7 HOH H 24 424 423 HOH HOH . Q 7 HOH H 25 425 424 HOH HOH . Q 7 HOH H 26 426 425 HOH HOH . Q 7 HOH H 27 427 426 HOH HOH . Q 7 HOH H 28 428 427 HOH HOH . Q 7 HOH H 29 429 428 HOH HOH . Q 7 HOH H 30 430 429 HOH HOH . Q 7 HOH H 31 431 430 HOH HOH . Q 7 HOH H 32 432 431 HOH HOH . Q 7 HOH H 33 433 432 HOH HOH . Q 7 HOH H 34 434 433 HOH HOH . Q 7 HOH H 35 435 434 HOH HOH . Q 7 HOH H 36 436 436 HOH HOH . Q 7 HOH H 37 437 437 HOH HOH . Q 7 HOH H 38 438 438 HOH HOH . Q 7 HOH H 39 439 439 HOH HOH . Q 7 HOH H 40 440 440 HOH HOH . Q 7 HOH H 41 441 441 HOH HOH . Q 7 HOH H 42 442 442 HOH HOH . Q 7 HOH H 43 443 443 HOH HOH . Q 7 HOH H 44 444 444 HOH HOH . Q 7 HOH H 45 445 445 HOH HOH . Q 7 HOH H 46 446 446 HOH HOH . Q 7 HOH H 47 447 447 HOH HOH . Q 7 HOH H 48 448 448 HOH HOH . Q 7 HOH H 49 449 449 HOH HOH . Q 7 HOH H 50 450 450 HOH HOH . Q 7 HOH H 51 451 451 HOH HOH . Q 7 HOH H 52 452 452 HOH HOH . Q 7 HOH H 53 453 453 HOH HOH . Q 7 HOH H 54 454 454 HOH HOH . Q 7 HOH H 55 455 455 HOH HOH . Q 7 HOH H 56 456 456 HOH HOH . Q 7 HOH H 57 457 457 HOH HOH . Q 7 HOH H 58 458 458 HOH HOH . Q 7 HOH H 59 459 459 HOH HOH . Q 7 HOH H 60 460 460 HOH HOH . Q 7 HOH H 61 461 461 HOH HOH . Q 7 HOH H 62 462 462 HOH HOH . Q 7 HOH H 63 463 463 HOH HOH . Q 7 HOH H 64 464 464 HOH HOH . Q 7 HOH H 65 465 465 HOH HOH . Q 7 HOH H 66 466 466 HOH HOH . Q 7 HOH H 67 467 467 HOH HOH . Q 7 HOH H 68 468 468 HOH HOH . Q 7 HOH H 69 469 469 HOH HOH . Q 7 HOH H 70 470 470 HOH HOH . Q 7 HOH H 71 471 471 HOH HOH . Q 7 HOH H 72 472 472 HOH HOH . Q 7 HOH H 73 473 473 HOH HOH . Q 7 HOH H 74 474 474 HOH HOH . Q 7 HOH H 75 475 475 HOH HOH . Q 7 HOH H 76 476 476 HOH HOH . Q 7 HOH H 77 477 477 HOH HOH . Q 7 HOH H 78 478 478 HOH HOH . Q 7 HOH H 79 479 479 HOH HOH . Q 7 HOH H 80 480 480 HOH HOH . Q 7 HOH H 81 481 481 HOH HOH . Q 7 HOH H 82 482 482 HOH HOH . Q 7 HOH H 83 483 483 HOH HOH . Q 7 HOH H 84 484 484 HOH HOH . Q 7 HOH H 85 485 485 HOH HOH . Q 7 HOH H 86 486 486 HOH HOH . Q 7 HOH H 87 487 487 HOH HOH . R 7 HOH B 1 101 101 HOH HOH . R 7 HOH B 2 102 102 HOH HOH . R 7 HOH B 3 103 103 HOH HOH . R 7 HOH B 4 104 104 HOH HOH . R 7 HOH B 5 105 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 14.375 64.72 12.435 1 109.71 ? C1 NAG 302 A 1 HETATM 2 C C2 NAG . . . F 4 15.749 64.741 11.734 1 101.76 ? C2 NAG 302 A 1 HETATM 3 C C3 NAG . . . F 4 15.611 65.216 10.298 1 103.07 ? C3 NAG 302 A 1 HETATM 4 C C4 NAG . . . F 4 14.538 64.404 9.591 1 111.8 ? C4 NAG 302 A 1 HETATM 5 C C5 NAG . . . F 4 13.179 64.725 10.203 1 118.7 ? C5 NAG 302 A 1 HETATM 6 C C6 NAG . . . F 4 12.264 63.52 10.297 1 116.06 ? C6 NAG 302 A 1 HETATM 7 C C7 NAG . . . F 4 17.521 65.12 13.413 1 87.96 ? C7 NAG 302 A 1 HETATM 8 C C8 NAG . . . F 4 17.386 63.673 13.776 1 88.74 ? C8 NAG 302 A 1 HETATM 9 N N2 NAG . . . F 4 16.709 65.57 12.448 1 101.09 ? N2 NAG 302 A 1 HETATM 10 O O1 NAG . . . F 4 14.079 63.428 12.857 1 106.33 ? O1 NAG 302 A 1 HETATM 11 O O3 NAG . . . F 4 16.861 65.074 9.634 1 79.88 ? O3 NAG 302 A 1 HETATM 12 O O4 NAG . . . F 4 14.513 64.737 8.208 1 106.65 ? O4 NAG 302 A 1 HETATM 13 O O5 NAG . . . F 4 13.324 65.275 11.528 1 119.83 ? O5 NAG 302 A 1 HETATM 14 O O6 NAG . . . F 4 11.474 63.522 11.478 1 106.43 ? O6 NAG 302 A 1 HETATM 15 O O7 NAG . . . F 4 18.329 65.853 13.969 1 88.61 ? O7 NAG 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #